Pentatricopeptide repeat-containing protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 617 |
| AccI | GTMKAC | 1 cut(s) | 810 |
| AccII | CGCG | 1 cut(s) | 513 |
| AccIII | TCCGGA | 1 cut(s) | 353 |
| AciI | CCGC | 3 cut(s) | 10, 257, 560 |
| AclWI | GGATC | 2 cut(s) | 878, 1311 |
| AcoI | YGGCCR | 2 cut(s) | 318, 1120 |
| AcsI | RAATTY | 3 cut(s) | 446, 540, 1286 |
| AcuI | CTGAAG | 2 cut(s) | 246, 519 |
| AfaI | GTAC | 1 cut(s) | 1515 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 327 |
| AhlI | ACTAGT | 1 cut(s) | 658 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1423, 1455 |
| AluBI | AGCT | 5 cut(s) | 20, 599, 1115, 1280, 1403 |
| AluI | AGCT | 5 cut(s) | 20, 599, 1115, 1280, 1403 |
| Alw21I | GWGCWC | 1 cut(s) | 377 |
| Alw26I | GTCTC | 1 cut(s) | 1490 |
| Alw44I | GTGCAC | 1 cut(s) | 373 |
| AlwI | GGATC | 2 cut(s) | 878, 1311 |
| Aor13HI | TCCGGA | 1 cut(s) | 353 |
| AoxI | GGCC | 5 cut(s) | 318, 1053, 1120, 1162, 1387 |
| ApaLI | GTGCAC | 1 cut(s) | 373 |
| ApeKI | GCWGC | 2 cut(s) | 20, 175 |
| ApoI | RAATTY | 3 cut(s) | 446, 540, 1286 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 274, 306 |
| AseI | ATTAAT | 2 cut(s) | 393, 1368 |
| AspLEI | GCGC | 1 cut(s) | 1193 |
| AspS9I | GGNCC | 2 cut(s) | 362, 1387 |
| AsuHPI | GGTGA | 2 cut(s) | 16, 775 |
| AsuII | TTCGAA | 1 cut(s) | 963 |
| AvaII | GGWCC | 1 cut(s) | 362 |
| BaeGI | GKGCMC | 1 cut(s) | 377 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 645, 678 |
| BalI | TGGCCA | 1 cut(s) | 1122 |
| BanII | GRGCYC | 1 cut(s) | 986 |
| BbsI | GAAGAC | 1 cut(s) | 65 |
| Bbv12I | GWGCWC | 1 cut(s) | 377 |
| BbvI | GCAGC | 2 cut(s) | 7, 187 |
| BccI | CCATC | 7 cut(s) | 48, 580, 826, 911, 1154, 1207, 1504 |
| BceAI | ACGGC | 2 cut(s) | 305, 517 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 98, 132, 616, 650 |
| BciVI | GTATCC | 1 cut(s) | 646 |
| BcoDI | GTCTC | 1 cut(s) | 1490 |
| BcuI | ACTAGT | 1 cut(s) | 658 |
| BfaI | CTAG | 5 cut(s) | 170, 366, 614, 659, 1188 |
| BfmI | CTRYAG | 2 cut(s) | 622, 1548 |
| BfuI | GTATCC | 1 cut(s) | 646 |
| BisI | GCNGC | 2 cut(s) | 21, 176 |
| BlpI | GCTNAGC | 1 cut(s) | 974 |
| BlsI | GCNGC | 2 cut(s) | 22, 177 |
| Bme18I | GGWCC | 1 cut(s) | 362 |
| BmgT120I | GGNCC | 2 cut(s) | 362, 1387 |
| BmiI | GGNNCC | 2 cut(s) | 1079, 1388 |
| BmsI | GCATC | 8 cut(s) | 205, 658, 960, 1050, 1098, 1123, 1543, 1565 |
| BpiI | GAAGAC | 1 cut(s) | 65 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 974 |
| Bpu14I | TTCGAA | 1 cut(s) | 963 |
| BsaBI | GATNNNNATC | 2 cut(s) | 882, 1594 |
| BsaJI | CCNNGG | 1 cut(s) | 1585 |
| BsaWI | WCCGGW | 1 cut(s) | 353 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 68, 98 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 327 |
| Bse1I | ACTGG | 3 cut(s) | 179, 1079, 1161 |
| Bse3DI | GCAATG | 1 cut(s) | 1200 |
| Bse8I | GATNNNNATC | 2 cut(s) | 882, 1594 |
| BseAI | TCCGGA | 1 cut(s) | 353 |
| BseDI | CCNNGG | 1 cut(s) | 1585 |
| BseGI | GGATG | 5 cut(s) | 220, 837, 922, 1165, 1595 |
| BseJI | GATNNNNATC | 2 cut(s) | 882, 1594 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 327 |
| BseMI | GCAATG | 1 cut(s) | 1200 |
| BseMII | CTCAG | 1 cut(s) | 699 |
| BseNI | ACTGG | 3 cut(s) | 179, 1079, 1161 |
| BseRI | GAGGAG | 1 cut(s) | 948 |
| BseSI | GKGCMC | 1 cut(s) | 377 |
| BseX3I | CGGCCG | 1 cut(s) | 318 |
| BseXI | GCAGC | 2 cut(s) | 7, 187 |
| Bsh1236I | CGCG | 1 cut(s) | 513 |
| Bsh1285I | CGRYCG | 1 cut(s) | 321 |
| BshFI | GGCC | 5 cut(s) | 320, 1055, 1122, 1164, 1389 |
| BsiEI | CGRYCG | 1 cut(s) | 321 |
| BsiHKAI | GWGCWC | 1 cut(s) | 377 |
| BsiSI | CCGG | 1 cut(s) | 354 |
| BslFI | GGGAC | 1 cut(s) | 1085 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 327 |
| BsmAI | GTCTC | 1 cut(s) | 1490 |
| BsmFI | GGGAC | 1 cut(s) | 1085 |
| BsmI | GAATGC | 1 cut(s) | 243 |
| BsnI | GGCC | 5 cut(s) | 320, 1055, 1122, 1164, 1389 |
| Bsp119I | TTCGAA | 1 cut(s) | 963 |
| Bsp1286I | GDGCHC | 2 cut(s) | 377, 986 |
| Bsp13I | TCCGGA | 1 cut(s) | 353 |
| Bsp143I | GATC | 2 cut(s) | 883, 1303 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 974 |
| Bsp68I | TCGCGA | 1 cut(s) | 513 |
| BspACI | CCGC | 3 cut(s) | 10, 257, 560 |
| BspANI | GGCC | 5 cut(s) | 320, 1055, 1122, 1164, 1389 |
| BspCNI | CTCAG | 1 cut(s) | 698 |
| BspEI | TCCGGA | 1 cut(s) | 353 |
| BspFNI | CGCG | 1 cut(s) | 513 |
| BspLI | GGNNCC | 2 cut(s) | 1079, 1388 |
| BspMAI | CTGCAG | 1 cut(s) | 1552 |
| BspPI | GGATC | 2 cut(s) | 878, 1311 |
| BspT104I | TTCGAA | 1 cut(s) | 963 |
| BsrDI | GCAATG | 1 cut(s) | 1200 |
| BsrI | ACTGG | 3 cut(s) | 179, 1079, 1161 |
| BssECI | CCNNGG | 1 cut(s) | 1585 |
| BssMI | GATC | 2 cut(s) | 883, 1303 |
| BssT1I | CCWWGG | 1 cut(s) | 1585 |
| Bst4CI | ACNGT | 6 cut(s) | 91, 208, 641, 895, 926, 1253 |
| Bst6I | CTCTTC | 1 cut(s) | 686 |
| BstBI | TTCGAA | 1 cut(s) | 963 |
| BstC8I | GCNNGC | 3 cut(s) | 601, 605, 1113 |
| BstDEI | CTNAG | 3 cut(s) | 685, 974, 1104 |
| BstF5I | GGATG | 5 cut(s) | 220, 837, 922, 1165, 1595 |
| BstFNI | CGCG | 1 cut(s) | 513 |
| BstHHI | GCGC | 1 cut(s) | 1193 |
| BstKTI | GATC | 2 cut(s) | 886, 1306 |
| BstMAI | GTCTC | 1 cut(s) | 1490 |
| BstMBI | GATC | 2 cut(s) | 883, 1303 |
| BstMCI | CGRYCG | 1 cut(s) | 321 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 247, 256, 510 |
| BstSFI | CTRYAG | 2 cut(s) | 622, 1548 |
| BstSLI | GKGCMC | 1 cut(s) | 377 |
| BstUI | CGCG | 1 cut(s) | 513 |
| BstV1I | GCAGC | 2 cut(s) | 7, 187 |
| BstV2I | GAAGAC | 1 cut(s) | 65 |
| BstX2I | RGATCY | 1 cut(s) | 1303 |
| BstYI | RGATCY | 1 cut(s) | 1303 |
| BstZI | CGGCCG | 1 cut(s) | 318 |
| BsuI | GTATCC | 1 cut(s) | 646 |
| BsuRI | GGCC | 5 cut(s) | 320, 1055, 1122, 1164, 1389 |
| BtgZI | GCGATG | 1 cut(s) | 1523 |
| BtsCI | GGATG | 5 cut(s) | 220, 837, 922, 1165, 1595 |
| BtsIMutI | CAGTG | 2 cut(s) | 87, 186 |
| BtuMI | TCGCGA | 1 cut(s) | 513 |
| Cac8I | GCNNGC | 3 cut(s) | 601, 605, 1113 |
| CfoI | GCGC | 1 cut(s) | 1193 |
| Cfr13I | GGNCC | 2 cut(s) | 362, 1387 |
| CseI | GACGC | 3 cut(s) | 239, 339, 1094 |
| Csp6I | GTAC | 1 cut(s) | 1514 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 76, 111 |
| CviAII | CATG | 3 cut(s) | 575, 913, 1057 |
| CviQI | GTAC | 1 cut(s) | 1514 |
| DdeI | CTNAG | 3 cut(s) | 685, 974, 1104 |
| DpnI | GATC | 2 cut(s) | 885, 1305 |
| DpnII | GATC | 2 cut(s) | 883, 1303 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 617 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 617 |
| EaeI | YGGCCR | 2 cut(s) | 318, 1120 |
| EagI | CGGCCG | 1 cut(s) | 318 |
| Eam1104I | CTCTTC | 1 cut(s) | 686 |
| EarI | CTCTTC | 1 cut(s) | 686 |
| EciI | GGCGGA | 1 cut(s) | 246 |
| EclXI | CGGCCG | 1 cut(s) | 318 |
| Eco130I | CCWWGG | 1 cut(s) | 1585 |
| Eco24I | GRGCYC | 1 cut(s) | 986 |
| Eco47I | GGWCC | 1 cut(s) | 362 |
| Eco52I | CGGCCG | 1 cut(s) | 318 |
| Eco57I | CTGAAG | 2 cut(s) | 246, 519 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1387 |
| EcoT14I | CCWWGG | 1 cut(s) | 1585 |
| EcoT22I | ATGCAT | 2 cut(s) | 673, 1558 |
| EcoT38I | GRGCYC | 1 cut(s) | 986 |
| ErhI | CCWWGG | 1 cut(s) | 1585 |
| FaeI | CATG | 3 cut(s) | 578, 916, 1060 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 447, 479 |
| FaqI | GGGAC | 1 cut(s) | 1085 |
| FatI | CATG | 3 cut(s) | 574, 912, 1056 |
| FauI | CCCGC | 1 cut(s) | 553 |
| FblI | GTMKAC | 1 cut(s) | 810 |
| Fnu4HI | GCNGC | 2 cut(s) | 21, 176 |
| FokI | GGATG | 5 cut(s) | 227, 844, 929, 1172, 1602 |
| FriOI | GRGCYC | 1 cut(s) | 986 |
| Fsp4HI | GCNGC | 2 cut(s) | 21, 176 |
| FspBI | CTAG | 5 cut(s) | 170, 366, 614, 659, 1188 |
| GlaI | GCGC | 1 cut(s) | 1192 |
| GluI | GCNGC | 2 cut(s) | 21, 176 |
| HaeIII | GGCC | 5 cut(s) | 320, 1055, 1122, 1164, 1389 |
| HapII | CCGG | 1 cut(s) | 354 |
| HgaI | GACGC | 3 cut(s) | 239, 339, 1094 |
| HhaI | GCGC | 1 cut(s) | 1193 |
| Hin1II | CATG | 3 cut(s) | 578, 916, 1060 |
| Hin6I | GCGC | 1 cut(s) | 1191 |
| HinP1I | GCGC | 1 cut(s) | 1191 |
| HindIII | AAGCTT | 1 cut(s) | 1113 |
| HinfI | GANTC | 2 cut(s) | 1292, 1374 |
| HpaII | CCGG | 1 cut(s) | 354 |
| HphI | GGTGA | 2 cut(s) | 16, 775 |
| Hpy166II | GTNNAC | 3 cut(s) | 375, 792, 811 |
| Hpy188I | TCNGA | 2 cut(s) | 688, 1475 |
| Hpy188III | TCNNGA | 6 cut(s) | 354, 464, 512, 537, 887, 1130 |
| Hpy8I | GTNNAC | 3 cut(s) | 375, 792, 811 |
| HpyAV | CCTTC | 9 cut(s) | 134, 147, 270, 493, 587, 842, 1259, 1421, 1531 |
| HpyCH4III | ACNGT | 6 cut(s) | 91, 208, 641, 895, 926, 1253 |
| HpyCH4IV | ACGT | 2 cut(s) | 794, 801 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 247, 256, 510 |
| HpyF3I | CTNAG | 3 cut(s) | 685, 974, 1104 |
| HpySE526I | ACGT | 2 cut(s) | 794, 801 |
| Hsp92II | CATG | 3 cut(s) | 578, 916, 1060 |
| HspAI | GCGC | 1 cut(s) | 1191 |
| Kpn2I | TCCGGA | 1 cut(s) | 353 |
| Kzo9I | GATC | 2 cut(s) | 883, 1303 |
| LmnI | GCTCC | 1 cut(s) | 596 |
| Lsp1109I | GCAGC | 2 cut(s) | 7, 187 |
| LweI | GCATC | 8 cut(s) | 205, 658, 960, 1050, 1098, 1123, 1543, 1565 |
| MaeI | CTAG | 5 cut(s) | 170, 366, 614, 659, 1188 |
| MaeII | ACGT | 2 cut(s) | 794, 801 |
| MaeIII | GTNAC | 4 cut(s) | 895, 920, 1004, 1487 |
| MalI | GATC | 2 cut(s) | 885, 1305 |
| MboI | GATC | 2 cut(s) | 883, 1303 |
| MboII | GAAGA | 9 cut(s) | 18, 21, 24, 65, 442, 500, 595, 673, 1234 |
| MfeI | CAATTG | 1 cut(s) | 1199 |
| MflI | RGATCY | 1 cut(s) | 1303 |
| MhlI | GDGCHC | 2 cut(s) | 377, 986 |
| MlsI | TGGCCA | 1 cut(s) | 1122 |
| MluCI | AATT | 8 cut(s) | 302, 357, 394, 446, 540, 1199, 1286, 1467 |
| MluNI | TGGCCA | 1 cut(s) | 1122 |
| MlyI | GAGTC | 1 cut(s) | 1368 |
| MmeI | TCCRAC | 1 cut(s) | 1209 |
| Mox20I | TGGCCA | 1 cut(s) | 1122 |
| Mph1103I | ATGCAT | 2 cut(s) | 673, 1558 |
| MroI | TCCGGA | 1 cut(s) | 353 |
| MscI | TGGCCA | 1 cut(s) | 1122 |
| MseI | TTAA | 5 cut(s) | 393, 674, 870, 993, 1368 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1361 |
| Msp20I | TGGCCA | 1 cut(s) | 1122 |
| MspI | CCGG | 1 cut(s) | 354 |
| MunI | CAATTG | 1 cut(s) | 1199 |
| Mva1269I | GAATGC | 1 cut(s) | 243 |
| MvnI | CGCG | 1 cut(s) | 513 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 247, 256, 510 |
| NdeII | GATC | 2 cut(s) | 883, 1303 |
| NlaIII | CATG | 3 cut(s) | 578, 916, 1060 |
| NlaIV | GGNNCC | 2 cut(s) | 1079, 1388 |
| NruI | TCGCGA | 1 cut(s) | 513 |
| NsiI | ATGCAT | 2 cut(s) | 673, 1558 |
| NspV | TTCGAA | 1 cut(s) | 963 |
| PctI | GAATGC | 1 cut(s) | 243 |
| PfeI | GAWTC | 1 cut(s) | 1292 |
| PkrI | GCNGC | 2 cut(s) | 22, 177 |
| PleI | GAGTC | 1 cut(s) | 1368 |
| PpsI | GAGTC | 1 cut(s) | 1368 |
| PshBI | ATTAAT | 2 cut(s) | 393, 1368 |
| PspN4I | GGNNCC | 2 cut(s) | 1079, 1388 |
| PspPI | GGNCC | 2 cut(s) | 362, 1387 |
| PstI | CTGCAG | 1 cut(s) | 1552 |
| PsuI | RGATCY | 1 cut(s) | 1303 |
| RruI | TCGCGA | 1 cut(s) | 513 |
| RsaI | GTAC | 1 cut(s) | 1515 |
| RsaNI | GTAC | 1 cut(s) | 1514 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1361 |
| SaqAI | TTAA | 5 cut(s) | 393, 674, 870, 993, 1368 |
| SatI | GCNGC | 2 cut(s) | 21, 176 |
| Sau3AI | GATC | 2 cut(s) | 883, 1303 |
| Sau96I | GGNCC | 2 cut(s) | 362, 1387 |
| SchI | GAGTC | 1 cut(s) | 1368 |
| SduI | GDGCHC | 2 cut(s) | 377, 986 |
| SfaNI | GCATC | 8 cut(s) | 205, 658, 960, 1050, 1098, 1123, 1543, 1565 |
| SfcI | CTRYAG | 2 cut(s) | 622, 1548 |
| SfuI | TTCGAA | 1 cut(s) | 963 |
| SinI | GGWCC | 1 cut(s) | 362 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1361 |
| SpeI | ACTAGT | 1 cut(s) | 658 |
| Sse9I | AATT | 8 cut(s) | 302, 357, 394, 446, 540, 1199, 1286, 1467 |
| SsiI | CCGC | 3 cut(s) | 10, 257, 560 |
| SspI | AATATT | 2 cut(s) | 285, 775 |
| SspMI | CTAG | 5 cut(s) | 170, 366, 614, 659, 1188 |
| StyI | CCWWGG | 1 cut(s) | 1585 |
| TaaI | ACNGT | 6 cut(s) | 91, 208, 641, 895, 926, 1253 |
| TaiI | ACGT | 2 cut(s) | 797, 804 |
| TaqI | TCGA | 3 cut(s) | 194, 636, 963 |
| TasI | AATT | 8 cut(s) | 302, 357, 394, 446, 540, 1199, 1286, 1467 |
| TfiI | GAWTC | 1 cut(s) | 1292 |
| Tru1I | TTAA | 5 cut(s) | 393, 674, 870, 993, 1368 |
| Tru9I | TTAA | 5 cut(s) | 393, 674, 870, 993, 1368 |
| TscAI | CASTG | 2 cut(s) | 94, 186 |
| TseI | GCWGC | 2 cut(s) | 20, 175 |
| TspDTI | ATGAA | 3 cut(s) | 591, 755, 771 |
| TspGWI | ACGGA | 1 cut(s) | 1580 |
| TspRI | CASTG | 2 cut(s) | 94, 186 |
| VneI | GTGCAC | 1 cut(s) | 373 |
| VpaK11BI | GGWCC | 1 cut(s) | 362 |
| VspI | ATTAAT | 2 cut(s) | 393, 1368 |
| XapI | RAATTY | 3 cut(s) | 446, 540, 1286 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 422 |
| XmiI | GTMKAC | 1 cut(s) | 810 |
| XspI | CTAG | 5 cut(s) | 170, 366, 614, 659, 1188 |
| Zsp2I | ATGCAT | 2 cut(s) | 673, 1558 |