Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0000021

Physical Location & Seq

Genomic Coordinates Reverse (-)

33820098 .. 33822202

Gene Structure 2105 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g39940.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1968 bp

ATGGCATATCTTGATATGAAGCTGTATGCTAGCAATAGGGGAGTGAAGGATCCTGGTGGTAGGACACTCACATTGGGCCTATGGAGGCCCAGTAGGGCTCTTTCTGAGTTTTGGCGAAGCTCTCAAAGCCGATTCTCAGTTGTGAAATTGAGAAGATACACAGACTTGAAGGCGAAGACTTGTGGAAAGCTGAAAATGATGCGCATAACGTCTTCTTGTTGCAGCAGCAGCACAAGAGGTAACTCAGTTCTTCACCCTACCACCACCGTTGTTGTTTTCATCAGCAATTACATGGGCAGAACAAGTAGAGGGTTTCATTCTCAACCTTCAGACCCAGCAAGATCTAGAGAAACCCATCGATGGGATCTTGTGAGAAACCCCCACCCACCTTCTGCGCCCAGAGTCAGAGATCTTGAACATGCCTTGAATGTGTTCGATGAAATGCTTCAAAGAAGACCTATGCCTTCTATCTTCCGCTTCATTCAGATATTGGGTCAACTTGTGAAAATGAAACATTATTCGGCTGTCATCGCTATGAATAAACAAATGGTTGAGTGCGGAATTCGTCCTGATCAGTGTACTCTATCTATTATCATGAATTGCTTTTGCCATTTAAATCAAATGGGATTTAGTTTATCTGTGTTGGGACACTTCTTCAAATTGGGTCGTCAATCGAATGTCATCAGCTACAATACTCTAATCAACGGCTTTGTTCTCAAGAATAGGATTCAAGAGGCAGCAGGGATTTTCAGCAAAATGTTGCAGGGAGGTCATTGCGTTCCCAATGTGGTTACTTTCAGCACAATTATAAAGGGACTCTGCCGGAGGGGTGACAACAATGCAGCTATTCAGTTGCTCAGGAAGATGGACGAAAGAGGTTTTAAGGCCAACATAGTCATTTATAGCACGATCATTGACAGTCTTTGCAAGGACACACTAGTTGTTGATGCAATGAACCTCTTCTCCGAAATGATTAGTAGGGGAATTGCTCCAAACGTTGTTACTTACACCTCTTTGATTCAAGGAGCTTGCAACACAGGTCAGTTTGAAGAAGCTACAAAGCTGTTATATGAAATGGCGAGTAGAAATATCTACCCAAATGTAGTCACCTACAGTGTCTTGGTTGATGGACTTTGTAAGGAGGGGAAAGTCGTGGAAGCCAATAGTGTGGTTGAAATCATGATCCGAAAAGATATTGAGCCTAATGCGATTACCTACAATTCACTAATGGATGGTTACTGTTTGCGAGGTGAAATGGGTGAAGCAAGAAAAGTCTTTGATCTAATGCTTGGCAAGGGTGGCATGGTTAATGTATTTAGTTGTAACATATTGATAAATGGATACAGCAAACATAAAAAGATTGATCAGGCCAATGAGGTTTTTGAGGAAATGTTTCGTTTGGAAATTCTTCCCAATACGATTGTTTACAACACTCTTATTGACGGTTTTTGTAAAGCAGGGAGAATGCAAGAAGCAGAAAAGTTGTTCTCTCGGATGCTAAGTTGTGGCCTACTTCCAAATGTTCAAACTTATGCCATTTTGCTTGACGGCCTATGTAGCAGCCAACAACTTTCAAGGGCAATGGAACTGCTTAGAGAGATGGAAGACAACAAGATGGAACTGAATATTGTAATTTACAACATTATCATTAAAGGTATGTGCAAAGCTGGAAGACTTAAATCTGCAACAGACTTCTTCTCTAGTTTGTCATCAAAAGGAGTTGTGCCTGATGTGTGGACATATAACGTGATGATTAATGGACTCTGTAATGGAGGCCTGTTGGTTGAAGCGGAAAAGCTACTTAGAGAAATGGAAGCGAAAGGCTGTTCTCCAGATGGTTGTACATATAACATCATCATCCGAGGGTTTATTAATAACAACGAGATATCAAGGGCTGTGCAACTTATTGAAGAGATGAAGGGAGATGGGGTTCTCTGCAGACGCATCAACTATGGAATTGGTAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0000963 GO:0000966 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004016 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009791 GO:0009845 GO:0009975 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0016829 GO:0016849 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048856 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0090351 GO:0090615 GO:0097159 GO:0140053 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

656

Amino Acids

73.53

Weight (kDa)

9.16

Isoelectric Point (pI)

43.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_24	PF23276	206 - 323	8.2e-06	Fungal tetratrico peptide repeats
PPR_3	PF13812	222 - 271	2.1e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	226 - 275	2.1e-13	PPR repeat family
PPR_1	PF12854	259 - 289	3.3e-12	PPR repeat
PPR_2	PF13041	261 - 310	9.5e-14	PPR repeat family
PPR_long	PF17177	273 - 429	3.7e-14	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	292 - 324	4.8e-09	PPR repeat
PPR_2	PF13041	297 - 345	5.9e-16	PPR repeat family
PPR_3	PF13812	320 - 375	2.7e-11	Pentatricopeptide repeat domain
PPR_1	PF12854	327 - 359	1.9e-09	PPR repeat
PPR_2	PF13041	331 - 380	1.1e-18	PPR repeat family
PPR	PF01535	334 - 364	1.3e-06	PPR repeat
PPR_1	PF12854	363 - 394	1e-09	PPR repeat
PPR_2	PF13041	374 - 414	1.3e-10	PPR repeat family
PPR_1	PF12854	397 - 429	2.1e-10	PPR repeat
PPR_2	PF13041	401 - 439	1.9e-07	PPR repeat family
PPR	PF01535	404 - 433	1.3e-07	PPR repeat
PPR_3	PF13812	426 - 481	8e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	437 - 473	6e-09	PPR repeat family
PPR	PF01535	439 - 466	3.4e-06	PPR repeat
TPR_24	PF23276	446 - 568	3.4e-11	Fungal tetratrico peptide repeats
PPR_long	PF17177	450 - 557	3.7e-07	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	461 - 515	9.9e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	469 - 499	1.5e-13	PPR repeat
PPR_2	PF13041	471 - 519	4.4e-19	PPR repeat family
PPR	PF01535	475 - 504	2.4e-10	PPR repeat
PPR_1	PF12854	503 - 535	8.1e-09	PPR repeat
PPR_long	PF17177	521 - 645	2.9e-06	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	530 - 586	3.9e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	539 - 567	2.2e-08	PPR repeat
PPR_2	PF13041	542 - 590	1.6e-17	PPR repeat family
PPR_1	PF12854	572 - 605	3.5e-13	PPR repeat
PPR	PF01535	580 - 609	9.4e-09	PPR repeat
PPR_2	PF13041	588 - 624	1.3e-08	PPR repeat family
PPR_3	PF13812	599 - 644	9.6e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	607 - 640	5.3e-08	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000021)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12700 AT1G12700 AT1G12700 AT1G62680 AT1G62680 AT1G62720 AT1G63230 AT1G63630 AT1G63630 AT1G64583 AT1G64583 AT3G16710 AT3G16710 AT5G16640 AT5G41170 AT5G41170
fragaria_vesca	FvH4_2g40320 FvH4_3g13950 FvH4_3g31580 FvH4_3g31590 FvH4_3g33650 FvH4_3g33650 FvH4_3g33650 FvH4_3g35200 FvH4_3g36280 FvH4_3g37111 FvH4_3g37480 FvH4_3g37481 FvH4_3g38020 FvH4_3g38070 FvH4_3g38471 FvH4_3g38472 FvH4_3g38590 FvH4_3g38590 FvH4_3g38590 FvH4_3g38931 FvH4_3g38940 FvH4_3g38940 FvH4_3g39650 FvH4_3g39890 FvH4_3g39940 FvH4_3g40100 FvH4_3g40130 FvH4_3g40940 FvH4_3g40940 FvH4_3g40940 FvH4_3g41340 FvH4_3g41820 FvH4_3g42120 FvH4_3g42121 FvH4_3g42430 FvH4_3g42600 FvH4_3g42700 FvH4_3g43150 FvH4_3g43170 FvH4_3g43330 FvH4_3g44300 FvH4_4g22270 FvH4_4g22280 FvH4_5g09470 FvH4_6g52550
malus_domestica	MD03G1099700.v1.1 MD03G1101000.v1.1 MD03G1103400.v1.1 MD03G1103500.v1.1 MD03G1103700.v1.1 MD03G1105300.v1.1 MD03G1106000.v1.1 MD03G1106100.v1.1 MD03G1107100.v1.1 MD03G1108100.v1.1 MD03G1113100.v1.1 MD03G1113300.v1.1 MD03G1113400.v1.1 MD03G1113500.v1.1 MD03G1113600.v1.1 MD03G1113700.v1.1 MD03G1113800.v1.1 MD04G1015600.v1.1 MD11G1115600.v1.1 MD11G1117400.v1.1 MD11G1117500.v1.1 MD11G1122400.v1.1 MD11G1126400.v1.1 MD11G1126500.v1.1 MD11G1128300.v1.1 MD11G1128400.v1.1 MD11G1128600.v1.1 MD11G1128700.v1.1 MD11G1131800.v1.1 MD11G1131900.v1.1 MD11G1132200.v1.1 MD11G1132300.v1.1 MD11G1135500.v1.1
prunus_persica	Prupe.3G114600_v2.0.a1 Prupe.3G114700_v2.0.a1 Prupe.3G138000_v2.0.a1 Prupe.6G080500_v2.0.a1 Prupe.6G081600_v2.0.a1 Prupe.6G086000_v2.0.a1 Prupe.6G087400_v2.0.a1 Prupe.6G087400_v2.0.a1 Prupe.6G087400_v2.0.a1 Prupe.6G087400_v2.0.a1 Prupe.6G087600_v2.0.a1 Prupe.6G088600_v2.0.a1 Prupe.6G088600_v2.0.a1 Prupe.6G088600_v2.0.a1 Prupe.6G088600_v2.0.a1 Prupe.6G090500_v2.0.a1 Prupe.6G090600_v2.0.a1 Prupe.6G091000_v2.0.a1 Prupe.6G091400_v2.0.a1 Prupe.6G091500_v2.0.a1 Prupe.6G093300_v2.0.a1 Prupe.6G094000_v2.0.a1 Prupe.6G094000_v2.0.a1 Prupe.6G094000_v2.0.a1 Prupe.6G094000_v2.0.a1 Prupe.6G106300_v2.0.a1 Prupe.6G117200_v2.0.a1 Prupe.6G117400_v2.0.a1 Prupe.6G195600_v2.0.a1 Prupe.6G195700_v2.0.a1 Prupe.8G027800_v2.0.a1 Prupe.8G078200_v2.0.a1 Prupe.8G078200_v2.0.a1
pyrus_communis	pycom03g08210 pycom03g08430 pycom03g08450 pycom03g08500 pycom03g08510 pycom03g08640 pycom03g08650 pycom03g08660 pycom04g01160 pycom11g09860 pycom11g10660 pycom11g10700 pycom11g10730 pycom11g10740 pycom11g10890 pycom11g10900 pycom11g10910 pycom11g11040 pycom11g11070 pycom11g11080 pycom11g11090 pycom11g11110 pycom11g11130 pycom11g11140 pycom11g11240
rosa_chinensis	RchiOBHm_Chr2g0133531 RchiOBHm_Chr4g0407671 RchiOBHm_Chr5g0027691 RchiOBHm_Chr5g0027731 RchiOBHm_Chr5g0031841 RchiOBHm_Chr5g0041821 RchiOBHm_Chr5g0061091 RchiOBHm_Chr5g0061131 RchiOBHm_Chr5g0061141 RchiOBHm_Chr5g0062111 RchiOBHm_Chr5g0062121 RchiOBHm_Chr5g0062141 RchiOBHm_Chr5g0062151 RchiOBHm_Chr5g0062161 RchiOBHm_Chr5g0062301 RchiOBHm_Chr5g0062311 RchiOBHm_Chr5g0065171 RchiOBHm_Chr5g0066121 RchiOBHm_Chr5g0066211 RchiOBHm_Chr5g0069221 RchiOBHm_Chr5g0069231 RchiOBHm_Chr5g0069241 RchiOBHm_Chr5g0069251 RchiOBHm_Chr5g0069261 RchiOBHm_Chr5g0069321 RchiOBHm_Chr5g0069341 RchiOBHm_Chr5g0069351 RchiOBHm_Chr5g0069571 RchiOBHm_Chr5g0069581 RchiOBHm_Chr5g0069591 RchiOBHm_Chr5g0069601 RchiOBHm_Chr5g0069651 RchiOBHm_Chr5g0070751 RchiOBHm_Chr5g0071481 RchiOBHm_Chr5g0071931 RchiOBHm_Chr5g0071941 RchiOBHm_Chr5g0072771 RchiOBHm_Chr5g0072831 RchiOBHm_Chr5g0072861 RchiOBHm_Chr5g0072871 RchiOBHm_Chr5g0072901 RchiOBHm_Chr5g0072921 RchiOBHm_Chr5g0073691 RchiOBHm_Chr5g0073711 RchiOBHm_Chr5g0073761 RchiOBHm_Chr5g0074141 RchiOBHm_Chr5g0074181 RchiOBHm_Chr5g0074191 RchiOBHm_Chr5g0074201 RchiOBHm_Chr5g0074231 RchiOBHm_Chr5g0074941 RchiOBHm_Chr5g0074951 RchiOBHm_Chr5g0074961 RchiOBHm_Chr5g0074981 RchiOBHm_Chr5g0075791 RchiOBHm_Chr5g0076111 RchiOBHm_Chr5g0076121 RchiOBHm_Chr5g0076231 RchiOBHm_Chr5g0076241 RchiOBHm_Chr5g0076251 RchiOBHm_Chr5g0076261 RchiOBHm_Chr5g0077441 RchiOBHm_Chr5g0077451 RchiOBHm_Chr5g0077481 RchiOBHm_Chr5g0077511 RchiOBHm_Chr5g0077521 RchiOBHm_Chr5g0077541 RchiOBHm_Chr5g0078461 RchiOBHm_Chr5g0078471 RchiOBHm_Chr5g0078541 RchiOBHm_Chr5g0078551 RchiOBHm_Chr5g0078591 RchiOBHm_Chr5g0078611 RchiOBHm_Chr5g0078801 RchiOBHm_Chr5g0078811 RchiOBHm_Chr7g0226411 RchiOBHm_Chr7g0226421
rosa_laevigata	RLG00000001731 RLG00000001921 RLG00000007507 RLG00000008174 RLG00000008512 RLG00000029432 RLG00000033036 RLG00000033038 RLG00000034096 RLG00000035428 RLG00000035433 RLG00000035434 RLG00000035435 RLG00000035535 RLG00000035536 RLG00000035548 RLG00000035751 RLG00000035754 RLG00000035764 RLG00000035882 RLG00000036044 RLG00000036048 RLG00000036060 RLG00000036061 RLG00000036062 RLG00000036063 RLG00000036070 RLG00000036078 RLG00000036079 RLG00000036080 RLG00000036156 RLG00000036218 RLG00000036219 RLG00000036263 RLG00000036264 RLG00000036331 RLG00000036332 RLG00000036333 RLG00000036338 RLG00000036339 RLG00000036344 RLG00000036345 RLG00000036347 RLG00000036348 RLG00000036349 RLG00000036405 RLG00000036416 RLG00000036457 RLG00000036459 RLG00000036515 RLG00000036516 RLG00000036517 RLG00000036646 RLG00000036697 RLG00000036698 RLG00000036699 RLG00000036702 RLG00000036774 RLG00000036775 RLG00000036786 RLG00000036787
rosa_multiflora	Rmu_co8164206.1_g000001 Rmu_co8198940.1_g000001 Rmu_co8222088.1_g000001 Rmu_co8267751.1_g000001 Rmu_co8339831.1_g000001 Rmu_sc0000573.1_g000056 Rmu_sc0000573.1_g000057 Rmu_sc0000848.1_g000018 Rmu_sc0000861.1_g000039 Rmu_sc0000956.1_g000006 Rmu_sc0000956.1_g000007 Rmu_sc0000987.1_g000004 Rmu_sc0001264.1_g000011 Rmu_sc0001264.1_g000023 Rmu_sc0001366.1_g000024 Rmu_sc0001366.1_g000034 Rmu_sc0001647.1_g000023 Rmu_sc0001647.1_g000025 Rmu_sc0002101.1_g000008 Rmu_sc0002149.1_g000019 Rmu_sc0002296.1_g000015 Rmu_sc0002296.1_g000018 Rmu_sc0002627.1_g000002 Rmu_sc0002658.1_g000002 Rmu_sc0002658.1_g000004 Rmu_sc0002658.1_g000005 Rmu_sc0002658.1_g000008 Rmu_sc0003160.1_g000001 Rmu_sc0003160.1_g000002 Rmu_sc0003160.1_g000027 Rmu_sc0003264.1_g000007 Rmu_sc0003323.1_g000018 Rmu_sc0003542.1_g000014 Rmu_sc0003945.1_g000018 Rmu_sc0004140.1_g000044 Rmu_sc0004140.1_g000045 Rmu_sc0004277.1_g000049 Rmu_sc0004277.1_g000050 Rmu_sc0004277.1_g000051 Rmu_sc0004277.1_g000056 Rmu_sc0004277.1_g000059 Rmu_sc0004277.1_g000064 Rmu_sc0004277.1_g000065 Rmu_sc0004277.1_g000066 Rmu_sc0004277.1_g000071 Rmu_sc0004277.1_g000073 Rmu_sc0004277.1_g000074 Rmu_sc0004277.1_g000080 Rmu_sc0004277.1_g000081 Rmu_sc0004277.1_g000082 Rmu_sc0004501.1_g000006 Rmu_sc0004501.1_g000008 Rmu_sc0004501.1_g000009 Rmu_sc0005069.1_g000010 Rmu_sc0005069.1_g000013 Rmu_sc0005069.1_g000028 Rmu_sc0005255.1_g000008 Rmu_sc0005255.1_g000009 Rmu_sc0005860.1_g000003 Rmu_sc0005961.1_g000008 Rmu_sc0005961.1_g000009 Rmu_sc0006031.1_g000026 Rmu_sc0006952.1_g000035 Rmu_sc0006984.1_g000001 Rmu_sc0007385.1_g000011 Rmu_sc0007385.1_g000018 Rmu_sc0007385.1_g000019 Rmu_sc0007385.1_g000025 Rmu_sc0009248.1_g000008 Rmu_sc0009248.1_g000016 Rmu_sc0009685.1_g000001 Rmu_sc0009685.1_g000008 Rmu_sc0009911.1_g000004 Rmu_sc0009988.1_g000002 Rmu_sc0013565.1_g000003 Rmu_sc0013615.1_g000005 Rmu_sc0015509.1_g000001 Rmu_sc0016676.1_g000001 Rmu_sc0019146.1_g000001 Rmu_sc0023658.1_g000001 Rmu_sc0026875.1_g000001 Rmu_sc0032705.1_g000003 Rmu_sc0036016.1_g000001 Rmu_sc0038790.1_g000001 Rmu_sc0038790.1_g000002 Rmu_sc0038790.1_g000003 Rmu_sc0041070.1_g000001 Rmu_sc0041071.1_g000001
rosa_roxburghii	Rroxscaffold_1G00004470 Rroxscaffold_1G00005600 Rroxscaffold_1G00006630 Rroxscaffold_1G00006640 Rroxscaffold_1G00006680 Rroxscaffold_1G00007240 Rroxscaffold_1G00007270 Rroxscaffold_1G00007600 Rroxscaffold_1G00008320 Rroxscaffold_1G00008330 Rroxscaffold_1G00008390 Rroxscaffold_1G00008400 Rroxscaffold_1G00009250 Rroxscaffold_1G00009640 Rroxscaffold_1G00010430 Rroxscaffold_1G00011430 Rroxscaffold_1G00011580 Rroxscaffold_1G00014270 Rroxscaffold_1G00017730 Rroxscaffold_1G00018390 Rroxscaffold_1G00018400 Rroxscaffold_1G00018410 Rroxscaffold_1G00018550 Rroxscaffold_1G00018580 Rroxscaffold_1G00018590 Rroxscaffold_1G00019560 Rroxscaffold_1G00038700 Rroxscaffold_1G00038710 Rroxscaffold_1G00051880 Rroxscaffold_2G00122050 Rroxscaffold_2G00122060 Rroxscaffold_2G00122070 Rroxscaffold_3G00232850 Rroxscaffold_3G00233170 Rroxscaffold_3G00235240 Rroxscaffold_3G00236030 Rroxscaffold_4G00316710 Rroxscaffold_5G00352260 Rroxscaffold_5G00354420 Rroxscaffold_5G00358050 Rroxscaffold_5G00366080 Rroxscaffold_5G00384640 Rroxscaffold_6G00394470
rosa_rugosa	Rorug02G0236100 Rorug02G0312600 Rorug02G0312600 Rorug04G0081200 Rorug04G0099500 Rorug04G0125700 Rorug04G0192800 Rorug04G0192800 Rorug05G0100300 Rorug05G0195500 Rorug05G0337500 Rorug05G0338000 Rorug05G0338100 Rorug05G0338200 Rorug05G0346000 Rorug05G0346100 Rorug05G0346300 Rorug05G0346400 Rorug05G0347500 Rorug05G0347500 Rorug05G0347700 Rorug05G0347800 Rorug05G0376600 Rorug05G0376600 Rorug05G0379000 Rorug05G0396800 Rorug05G0397000 Rorug05G0397000 Rorug05G0397000 Rorug05G0397200 Rorug05G0398400 Rorug05G0398500 Rorug05G0399000 Rorug05G0412600 Rorug05G0412700 Rorug05G0415700 Rorug05G0419800 Rorug05G0419900 Rorug05G0420000 Rorug05G0420100 Rorug05G0420200 Rorug05G0420500 Rorug05G0429200 Rorug05G0429300 Rorug05G0429400 Rorug05G0429600 Rorug05G0429600 Rorug05G0442200 Rorug05G0446100 Rorug05G0446100 Rorug05G0446100 Rorug05G0446100 Rorug05G0446100 Rorug05G0446200 Rorug05G0446200 Rorug05G0446300 Rorug05G0455000 Rorug05G0455000 Rorug05G0455200 Rorug05G0455400 Rorug05G0461000 Rorug06G0021200 Rorug07G0220800 Rorug07G0237100
rosa_samantha	Rh4DG139600 Rh7AG368500 Rh7DG382400
rosa_wichuraiana	Rw0G005990 Rw0G015820 Rw0G023090 Rw1G011560 Rw5G026460 Rw5G037630 Rw5G040110 Rw5G042370 Rw5G042480 Rw5G042500 Rw5G042520 Rw5G043540 Rw5G043840 Rw5G044270 Rw5G044280 Rw5G044310 Rw5G044320 Rw5G044940 Rw5G045650 Rw5G045660 Rw5G045670 Rw5G046760 Rw5G047270 Rw5G047280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	809
Acc16I	TGCGCA	1 cut(s)	203
AciI	CCGC	3 cut(s)	475, 558, 1790
AclI	AACGTT	1 cut(s)	996
AclWI	GGATC	4 cut(s)	44, 57, 372, 1177
AcsI	RAATTY	2 cut(s)	561, 1404
AcuI	CTGAAG	1 cut(s)	312
AfaI	GTAC	2 cut(s)	580, 1843
AfiI	CCNNNNNNNGG	2 cut(s)	360, 361
AhlI	ACTAGT	1 cut(s)	937
AjnI	CCWGG	1 cut(s)	52
AloI	GAACNNNNNNTCC	4 cut(s)	947, 979, 1914, 1946
AlwI	GGATC	4 cut(s)	44, 57, 372, 1177
AoxI	GGCC	7 cut(s)	76, 86, 885, 1368, 1507, 1549, 1774
ApeKI	GCWGC	6 cut(s)	222, 225, 228, 737, 842, 1560
ApoI	RAATTY	2 cut(s)	561, 1404
AseI	ATTAAT	2 cut(s)	1755, 1872
Asp700I	GAANNNNTTC	5 cut(s)	431, 444, 959, 1392, 1407
AspLEI	GCGC	2 cut(s)	204, 397
AspS9I	GGNCC	2 cut(s)	76, 87
AsuHPI	GGTGA	5 cut(s)	245, 842, 1099, 1262, 1271
AsuNHI	GCTAGC	1 cut(s)	29
BamHI	GGATCC	1 cut(s)	49
BanII	GRGCYC	1 cut(s)	100
BbsI	GAAGAC	5 cut(s)	182, 204, 460, 1611, 1678
BbvI	GCAGC	6 cut(s)	234, 237, 240, 749, 854, 1572
BccI	CCATC	9 cut(s)	354, 363, 859, 1121, 1226, 1594, 1609, 1829, 1919
BceAI	ACGGC	2 cut(s)	721, 1564
BciT130I	CCWGG	1 cut(s)	54
BciVI	GTATCC	1 cut(s)	1334
BclI	TGATCA	2 cut(s)	571, 1363
BcuI	ACTAGT	1 cut(s)	937
BfaI	CTAG	4 cut(s)	30, 345, 938, 1701
BfmI	CTRYAG	2 cut(s)	1111, 1936
BfuI	GTATCC	1 cut(s)	1334
BglII	AGATCT	2 cut(s)	341, 409
BisI	GCNGC	6 cut(s)	223, 226, 229, 738, 843, 1561
BlsI	GCNGC	6 cut(s)	224, 227, 230, 739, 844, 1562
Bme1390I	CCNGG	1 cut(s)	54
BmgT120I	GGNCC	2 cut(s)	76, 87
BmiI	GGNNCC	1 cut(s)	51
BmrFI	CCNGG	1 cut(s)	54
BmrI	ACTGGG	1 cut(s)	84
BmsI	GCATC	4 cut(s)	189, 937, 1485, 1953
BmtI	GCTAGC	1 cut(s)	33
BmuI	ACTGGG	1 cut(s)	84
BpiI	GAAGAC	5 cut(s)	182, 204, 460, 1611, 1678
BpmI	CTGGAG	1 cut(s)	1815
Bpu10I	CCTNAGC	1 cut(s)	857
BpuEI	CTTGAG	1 cut(s)	701
Bsa29I	ATCGAT	1 cut(s)	358
BsaJI	CCNNGG	1 cut(s)	1861
BsaXI	ACNNNNNCTCC	6 cut(s)	76, 106, 947, 977, 1914, 1944
Bsc4I	CCNNNNNNNGG	2 cut(s)	360, 361
Bse1I	ACTGG	1 cut(s)	90
Bse3DI	GCAATG	3 cut(s)	772, 957, 1587
BseBI	CCWGG	1 cut(s)	54
BseCI	ATCGAT	1 cut(s)	358
BseDI	CCNNGG	1 cut(s)	1861
BseGI	GGATG	3 cut(s)	1237, 1500, 1857
BseLI	CCNNNNNNNGG	2 cut(s)	360, 361
BseMI	GCAATG	3 cut(s)	772, 957, 1587
BseMII	CTCAG	4 cut(s)	96, 150, 258, 871
BseNI	ACTGG	1 cut(s)	90
BseXI	GCAGC	6 cut(s)	234, 237, 240, 749, 854, 1572
BseYI	CCCAGC	1 cut(s)	334
BshFI	GGCC	7 cut(s)	78, 88, 887, 1370, 1509, 1551, 1776
BshVI	ATCGAT	1 cut(s)	358
BsiSI	CCGG	1 cut(s)	823
BslFI	GGGAC	2 cut(s)	660, 828
BslI	CCNNNNNNNGG	2 cut(s)	360, 361
BsmFI	GGGAC	2 cut(s)	660, 828
BsmI	GAATGC	1 cut(s)	1470
BsnI	GGCC	7 cut(s)	78, 88, 887, 1370, 1509, 1551, 1776
Bsp1286I	GDGCHC	1 cut(s)	100
Bsp1407I	TGTACA	1 cut(s)	1841
Bsp143I	GATC	9 cut(s)	49, 341, 364, 409, 571, 909, 1182, 1279, 1363
BspACI	CCGC	3 cut(s)	475, 558, 1790
BspANI	GGCC	7 cut(s)	78, 88, 887, 1370, 1509, 1551, 1776
BspCNI	CTCAG	4 cut(s)	97, 149, 257, 870
BspDI	ATCGAT	1 cut(s)	358
BspHI	TCATGA	2 cut(s)	594, 1179
BspLI	GGNNCC	1 cut(s)	51
BspMAI	CTGCAG	1 cut(s)	1940
BspOI	GCTAGC	1 cut(s)	33
BspPI	GGATC	4 cut(s)	44, 57, 372, 1177
BsrDI	GCAATG	3 cut(s)	772, 957, 1587
BsrGI	TGTACA	1 cut(s)	1841
BsrI	ACTGG	1 cut(s)	90
BssECI	CCNNGG	1 cut(s)	1861
BssMI	GATC	9 cut(s)	49, 341, 364, 409, 571, 909, 1182, 1279, 1363
Bst2UI	CCWGG	1 cut(s)	54
Bst4CI	ACNGT	5 cut(s)	268, 920, 1115, 1241, 1445
Bst6I	CTCTTC	2 cut(s)	965, 1905
BstAUI	TGTACA	1 cut(s)	1841
BstC8I	GCNNGC	2 cut(s)	31, 1030
BstDEI	CTNAG	7 cut(s)	105, 136, 244, 857, 1499, 1592, 1802
BstF5I	GGATG	3 cut(s)	1237, 1500, 1857
BstHHI	GCGC	2 cut(s)	204, 397
BstKTI	GATC	9 cut(s)	52, 344, 367, 412, 574, 912, 1185, 1282, 1366
BstMBI	GATC	9 cut(s)	49, 341, 364, 409, 571, 909, 1182, 1279, 1363
BstMWI	GCNNNNNNNGC	5 cut(s)	126, 228, 530, 1299, 1557
BstNI	CCWGG	1 cut(s)	54
BstNSI	RCATGY	1 cut(s)	422
BstSCI	CCNGG	1 cut(s)	52
BstSFI	CTRYAG	2 cut(s)	1111, 1936
BstV1I	GCAGC	6 cut(s)	234, 237, 240, 749, 854, 1572
BstV2I	GAAGAC	5 cut(s)	182, 204, 460, 1611, 1678
BstX2I	RGATCY	4 cut(s)	49, 341, 364, 409
BstXI	CCANNNNNNTGG	1 cut(s)	1168
BstYI	RGATCY	4 cut(s)	49, 341, 364, 409
Bsu15I	ATCGAT	1 cut(s)	358
BsuI	GTATCC	1 cut(s)	1334
BsuRI	GGCC	7 cut(s)	78, 88, 887, 1370, 1509, 1551, 1776
BsuTUI	ATCGAT	1 cut(s)	358
BtgZI	GCGATG	1 cut(s)	514
BtsCI	GGATG	3 cut(s)	1237, 1500, 1857
BtsIMutI	CAGTG	2 cut(s)	581, 1120
Cac8I	GCNNGC	2 cut(s)	31, 1030
CciI	TCATGA	2 cut(s)	594, 1179
CfoI	GCGC	2 cut(s)	204, 397
Cfr13I	GGNCC	2 cut(s)	76, 87
ClaI	ATCGAT	1 cut(s)	358
CseI	GACGC	1 cut(s)	1950
Csp6I	GTAC	2 cut(s)	579, 1842
CspCI	CAANNNNNGTGG	4 cut(s)	250, 253, 285, 288
CviAII	CATG	5 cut(s)	292, 419, 595, 1180, 1303
CviQI	GTAC	2 cut(s)	579, 1842
DdeI	CTNAG	7 cut(s)	105, 136, 244, 857, 1499, 1592, 1802
DpnI	GATC	9 cut(s)	51, 343, 366, 411, 573, 911, 1184, 1281, 1365
DpnII	GATC	9 cut(s)	49, 341, 364, 409, 571, 909, 1182, 1279, 1363
DraI	TTTAAA	1 cut(s)	615
Eam1104I	CTCTTC	2 cut(s)	965, 1905
EarI	CTCTTC	2 cut(s)	965, 1905
Eco147I	AGGCCT	1 cut(s)	1776
Eco24I	GRGCYC	1 cut(s)	100
Eco32I	GATATC	1 cut(s)	1887
Eco57I	CTGAAG	1 cut(s)	312
EcoRI	GAATTC	1 cut(s)	561
EcoRII	CCWGG	1 cut(s)	52
EcoRV	GATATC	1 cut(s)	1887
EcoT38I	GRGCYC	1 cut(s)	100
FaeI	CATG	5 cut(s)	295, 422, 598, 1183, 1306
FaqI	GGGAC	2 cut(s)	660, 828
FatI	CATG	5 cut(s)	291, 418, 594, 1179, 1302
FbaI	TGATCA	2 cut(s)	571, 1363
Fnu4HI	GCNGC	6 cut(s)	223, 226, 229, 738, 843, 1561
FokI	GGATG	3 cut(s)	1244, 1507, 1844
FriOI	GRGCYC	1 cut(s)	100
Fsp4HI	GCNGC	6 cut(s)	223, 226, 229, 738, 843, 1561
FspAI	RTGCGCAY	1 cut(s)	203
FspBI	CTAG	4 cut(s)	30, 345, 938, 1701
FspI	TGCGCA	1 cut(s)	203
GlaI	GCGC	2 cut(s)	203, 396
GluI	GCNGC	6 cut(s)	223, 226, 229, 738, 843, 1561
GsaI	CCCAGC	1 cut(s)	338
GsuI	CTGGAG	1 cut(s)	1815
HaeIII	GGCC	7 cut(s)	78, 88, 887, 1370, 1509, 1551, 1776
HapII	CCGG	1 cut(s)	823
HgaI	GACGC	1 cut(s)	1950
HhaI	GCGC	2 cut(s)	204, 397
Hin1II	CATG	5 cut(s)	295, 422, 598, 1183, 1306
Hin6I	GCGC	2 cut(s)	202, 395
HinP1I	GCGC	2 cut(s)	202, 395
HincII	GTYRAC	1 cut(s)	497
HindII	GTYRAC	1 cut(s)	497
HinfI	GANTC	6 cut(s)	132, 402, 727, 816, 1018, 1761
HpaII	CCGG	1 cut(s)	823
HphI	GGTGA	5 cut(s)	245, 842, 1099, 1262, 1271
Hpy166II	GTNNAC	4 cut(s)	497, 579, 1426, 1737
Hpy188I	TCNGA	8 cut(s)	106, 331, 407, 486, 967, 1187, 1494, 1862
Hpy8I	GTNNAC	4 cut(s)	497, 579, 1426, 1737
HpyAV	CCTTC	6 cut(s)	40, 163, 336, 399, 474, 1912
HpyCH4III	ACNGT	5 cut(s)	268, 920, 1115, 1241, 1445
HpyCH4IV	ACGT	3 cut(s)	209, 996, 1746
HpyF10VI	GCNNNNNNNGC	5 cut(s)	126, 228, 530, 1299, 1557
HpyF3I	CTNAG	7 cut(s)	105, 136, 244, 857, 1499, 1592, 1802
HpySE526I	ACGT	3 cut(s)	209, 996, 1746
Hsp92II	CATG	5 cut(s)	295, 422, 598, 1183, 1306
HspAI	GCGC	2 cut(s)	202, 395
Ksp22I	TGATCA	2 cut(s)	571, 1363
Kzo9I	GATC	9 cut(s)	49, 341, 364, 409, 571, 909, 1182, 1279, 1363
LmnI	GCTCC	2 cut(s)	994, 1025
Lsp1109I	GCAGC	6 cut(s)	234, 237, 240, 749, 854, 1572
LweI	GCATC	4 cut(s)	189, 937, 1485, 1953
MaeI	CTAG	4 cut(s)	30, 345, 938, 1701
MaeII	ACGT	3 cut(s)	209, 996, 1746
MaeIII	GTNAC	7 cut(s)	239, 790, 830, 1000, 1105, 1235, 1322
MalI	GATC	9 cut(s)	51, 343, 366, 411, 573, 911, 1184, 1281, 1365
MboI	GATC	9 cut(s)	49, 341, 364, 409, 571, 909, 1182, 1279, 1363
MflI	RGATCY	4 cut(s)	49, 341, 364, 409
MhlI	GDGCHC	1 cut(s)	100
MlyI	GAGTC	3 cut(s)	411, 810, 1755
MroXI	GAANNNNTTC	5 cut(s)	431, 444, 959, 1392, 1407
MseI	TTAA	7 cut(s)	614, 882, 1308, 1650, 1677, 1755, 1872
MslI	CAYNNNNRTG	1 cut(s)	533
MspI	CCGG	1 cut(s)	823
MspR9I	CCNGG	1 cut(s)	54
Mva1269I	GAATGC	1 cut(s)	1470
MvaI	CCWGG	1 cut(s)	54
MwoI	GCNNNNNNNGC	5 cut(s)	126, 228, 530, 1299, 1557
NdeII	GATC	9 cut(s)	49, 341, 364, 409, 571, 909, 1182, 1279, 1363
NheI	GCTAGC	1 cut(s)	29
NlaIII	CATG	5 cut(s)	295, 422, 598, 1183, 1306
NlaIV	GGNNCC	1 cut(s)	51
NmuCI	GTSAC	2 cut(s)	830, 1105
NsbI	TGCGCA	1 cut(s)	203
NspI	RCATGY	1 cut(s)	422
PagI	TCATGA	2 cut(s)	594, 1179
PceI	AGGCCT	1 cut(s)	1776
PctI	GAATGC	1 cut(s)	1470
PdmI	GAANNNNTTC	5 cut(s)	431, 444, 959, 1392, 1407
PfeI	GAWTC	3 cut(s)	132, 727, 1018
PkrI	GCNGC	6 cut(s)	224, 227, 230, 739, 844, 1562
PleI	GAGTC	3 cut(s)	410, 810, 1755
PpsI	GAGTC	3 cut(s)	410, 810, 1755
PshBI	ATTAAT	2 cut(s)	1755, 1872
PsiI	TTATAA	1 cut(s)	809
Psp1406I	AACGTT	1 cut(s)	996
Psp6I	CCWGG	1 cut(s)	52
PspFI	CCCAGC	1 cut(s)	334
PspGI	CCWGG	1 cut(s)	52
PspN4I	GGNNCC	1 cut(s)	51
PspPI	GGNCC	2 cut(s)	76, 87
PstI	CTGCAG	1 cut(s)	1940
PsuI	RGATCY	4 cut(s)	49, 341, 364, 409
RsaI	GTAC	2 cut(s)	580, 1843
RsaNI	GTAC	2 cut(s)	579, 1842
RseI	CAYNNNNRTG	1 cut(s)	533
SaqAI	TTAA	7 cut(s)	614, 882, 1308, 1650, 1677, 1755, 1872
SatI	GCNGC	6 cut(s)	223, 226, 229, 738, 843, 1561
Sau3AI	GATC	9 cut(s)	49, 341, 364, 409, 571, 909, 1182, 1279, 1363
Sau96I	GGNCC	2 cut(s)	76, 87
SchI	GAGTC	3 cut(s)	411, 810, 1755
ScrFI	CCNGG	1 cut(s)	54
SduI	GDGCHC	1 cut(s)	100
SfaNI	GCATC	4 cut(s)	189, 937, 1485, 1953
SfcI	CTRYAG	2 cut(s)	1111, 1936
SmiI	ATTTAAAT	1 cut(s)	615
SmiMI	CAYNNNNRTG	1 cut(s)	533
SmlI	CTYRAG	1 cut(s)	716
SmoI	CTYRAG	1 cut(s)	716
SpeI	ACTAGT	1 cut(s)	937
SseBI	AGGCCT	1 cut(s)	1776
SsiI	CCGC	3 cut(s)	475, 558, 1790
SspI	AATATT	1 cut(s)	1627
SspMI	CTAG	4 cut(s)	30, 345, 938, 1701
StuI	AGGCCT	1 cut(s)	1776
StyD4I	CCNGG	1 cut(s)	52
SwaI	ATTTAAAT	1 cut(s)	615
TaaI	ACNGT	5 cut(s)	268, 920, 1115, 1241, 1445
TaiI	ACGT	3 cut(s)	212, 999, 1749
TaqI	TCGA	3 cut(s)	358, 435, 674
TatI	WGTACW	2 cut(s)	578, 1841
TfiI	GAWTC	3 cut(s)	132, 727, 1018
Tru1I	TTAA	7 cut(s)	614, 882, 1308, 1650, 1677, 1755, 1872
Tru9I	TTAA	7 cut(s)	614, 882, 1308, 1650, 1677, 1755, 1872
TscAI	CASTG	2 cut(s)	581, 1120
TseFI	GTSAC	2 cut(s)	830, 1105
TseI	GCWGC	6 cut(s)	222, 225, 228, 737, 842, 1560
Tsp45I	GTSAC	2 cut(s)	830, 1105
TspRI	CASTG	2 cut(s)	581, 1120
VspI	ATTAAT	2 cut(s)	1755, 1872
XapI	RAATTY	2 cut(s)	561, 1404
XbaI	TCTAGA	1 cut(s)	344
XceI	RCATGY	1 cut(s)	422
XmnI	GAANNNNTTC	5 cut(s)	431, 444, 959, 1392, 1407
XspI	CTAG	4 cut(s)	30, 345, 938, 1701

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.