Pentatricopeptide repeat-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PPR_3 | PF13812 | 126 - 182 | 1.5e-10 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 131 - 163 | 2.5e-08 | PPR repeat |
| PPR_2 | PF13041 | 134 - 183 | 8e-15 | PPR repeat family |
| PPR_1 | PF12854 | 168 - 199 | 3e-11 | PPR repeat |
| PPR_3 | PF13812 | 169 - 208 | 3.2e-08 | Pentatricopeptide repeat domain |
| PPR_2 | PF13041 | 170 - 208 | 1.2e-10 | PPR repeat family |
| PPR | PF01535 | 173 - 203 | 3.4e-06 | PPR repeat |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 485 |
| AccII | CGCG | 2 cut(s) | 178, 469 |
| AciI | CCGC | 1 cut(s) | 569 |
| AcsI | RAATTY | 1 cut(s) | 471 |
| AcyI | GRCGYC | 1 cut(s) | 144 |
| AgsI | TTSAA | 7 cut(s) | 151, 208, 238, 343, 385, 398, 578 |
| AluBI | AGCT | 2 cut(s) | 109, 360 |
| AluI | AGCT | 2 cut(s) | 109, 360 |
| ApeKI | GCWGC | 1 cut(s) | 464 |
| ApoI | RAATTY | 1 cut(s) | 471 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 155, 168 |
| AspLEI | GCGC | 1 cut(s) | 469 |
| AsuHPI | GGTGA | 2 cut(s) | 400, 409 |
| BbsI | GAAGAC | 1 cut(s) | 386 |
| BbvCI | CCTCAGC | 1 cut(s) | 459 |
| BbvI | GCAGC | 1 cut(s) | 476 |
| BccI | CCATC | 3 cut(s) | 263, 547, 586 |
| BceAI | ACGGC | 1 cut(s) | 448 |
| BfaI | CTAG | 1 cut(s) | 21 |
| BfuAI | ACCTGC | 1 cut(s) | 485 |
| BisI | GCNGC | 2 cut(s) | 465, 570 |
| BlsI | GCNGC | 2 cut(s) | 466, 571 |
| BmrI | ACTGGG | 1 cut(s) | 398 |
| BmsI | GCATC | 1 cut(s) | 596 |
| BmuI | ACTGGG | 1 cut(s) | 398 |
| BpiI | GAAGAC | 1 cut(s) | 386 |
| Bpu10I | CCTNAGC | 1 cut(s) | 459 |
| BpuEI | CTTGAG | 1 cut(s) | 428 |
| BsaHI | GRCGYC | 1 cut(s) | 144 |
| Bse1I | ACTGG | 1 cut(s) | 393 |
| BseGI | GGATG | 2 cut(s) | 255, 611 |
| BseMII | CTCAG | 1 cut(s) | 450 |
| BseNI | ACTGG | 1 cut(s) | 393 |
| BseXI | GCAGC | 1 cut(s) | 476 |
| BseYI | CCCAGC | 1 cut(s) | 105 |
| BsgI | GTGCAG | 1 cut(s) | 234 |
| Bsh1236I | CGCG | 2 cut(s) | 178, 469 |
| BspACI | CCGC | 1 cut(s) | 569 |
| BspCNI | CTCAG | 1 cut(s) | 451 |
| BspFNI | CGCG | 2 cut(s) | 178, 469 |
| BspMI | ACCTGC | 1 cut(s) | 485 |
| BsrI | ACTGG | 1 cut(s) | 393 |
| BssNI | GRCGYC | 1 cut(s) | 144 |
| Bst6I | CTCTTC | 1 cut(s) | 41 |
| BstACI | GRCGYC | 1 cut(s) | 144 |
| BstC8I | GCNNGC | 1 cut(s) | 611 |
| BstDEI | CTNAG | 1 cut(s) | 459 |
| BstF5I | GGATG | 2 cut(s) | 255, 611 |
| BstFNI | CGCG | 2 cut(s) | 178, 469 |
| BstHHI | GCGC | 1 cut(s) | 469 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 175, 184, 464 |
| BstUI | CGCG | 2 cut(s) | 178, 469 |
| BstV1I | GCAGC | 1 cut(s) | 476 |
| BstV2I | GAAGAC | 1 cut(s) | 386 |
| BtsCI | GGATG | 2 cut(s) | 255, 611 |
| BtsI | GCAGTG | 1 cut(s) | 564 |
| BtsIMutI | CAGTG | 1 cut(s) | 564 |
| BveI | ACCTGC | 1 cut(s) | 485 |
| Cac8I | GCNNGC | 1 cut(s) | 611 |
| CfoI | GCGC | 1 cut(s) | 469 |
| CseI | GACGC | 2 cut(s) | 152, 167 |
| CviAII | CATG | 1 cut(s) | 550 |
| CviJI | RGCY | 9 cut(s) | 59, 109, 360, 435, 458, 508, 543, 572, 613 |
| CviKI_1 | RGCY | 9 cut(s) | 59, 109, 360, 435, 458, 508, 543, 572, 613 |
| DdeI | CTNAG | 1 cut(s) | 459 |
| DraI | TTTAAA | 1 cut(s) | 268 |
| Eam1104I | CTCTTC | 1 cut(s) | 41 |
| EarI | CTCTTC | 1 cut(s) | 41 |
| FaeI | CATG | 1 cut(s) | 553 |
| FaiI | YATR | 4 cut(s) | 281, 306, 551, 620 |
| FatI | CATG | 1 cut(s) | 549 |
| Fnu4HI | GCNGC | 2 cut(s) | 465, 570 |
| FokI | GGATG | 2 cut(s) | 242, 618 |
| Fsp4HI | GCNGC | 2 cut(s) | 465, 570 |
| FspBI | CTAG | 1 cut(s) | 21 |
| GlaI | GCGC | 1 cut(s) | 468 |
| GluI | GCNGC | 2 cut(s) | 465, 570 |
| GsaI | CCCAGC | 1 cut(s) | 109 |
| HgaI | GACGC | 2 cut(s) | 152, 167 |
| HhaI | GCGC | 1 cut(s) | 469 |
| Hin1I | GRCGYC | 1 cut(s) | 144 |
| Hin1II | CATG | 1 cut(s) | 553 |
| Hin6I | GCGC | 1 cut(s) | 467 |
| HinP1I | GCGC | 1 cut(s) | 467 |
| HincII | GTYRAC | 1 cut(s) | 46 |
| HindII | GTYRAC | 1 cut(s) | 46 |
| HinfI | GANTC | 4 cut(s) | 120, 220, 343, 448 |
| HphI | GGTGA | 2 cut(s) | 400, 409 |
| Hpy166II | GTNNAC | 1 cut(s) | 46 |
| Hpy188III | TCNNGA | 3 cut(s) | 96, 217, 445 |
| Hpy8I | GTNNAC | 1 cut(s) | 46 |
| HpyAV | CCTTC | 3 cut(s) | 145, 198, 424 |
| HpyCH4IV | ACGT | 1 cut(s) | 405 |
| HpyCH4V | TGCA | 2 cut(s) | 251, 549 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 175, 184, 464 |
| HpyF3I | CTNAG | 1 cut(s) | 459 |
| HpySE526I | ACGT | 1 cut(s) | 405 |
| Hsp92I | GRCGYC | 1 cut(s) | 144 |
| Hsp92II | CATG | 1 cut(s) | 553 |
| HspAI | GCGC | 1 cut(s) | 467 |
| LpnPI | CCDG | 5 cut(s) | 42, 109, 119, 374, 480 |
| Lsp1109I | GCAGC | 1 cut(s) | 476 |
| LweI | GCATC | 1 cut(s) | 596 |
| MaeI | CTAG | 1 cut(s) | 21 |
| MaeII | ACGT | 1 cut(s) | 405 |
| MaeIII | GTNAC | 2 cut(s) | 406, 517 |
| MboII | GAAGA | 7 cut(s) | 5, 28, 183, 373, 386, 601, 608 |
| MluCI | AATT | 5 cut(s) | 233, 288, 377, 471, 578 |
| MlyI | GAGTC | 2 cut(s) | 114, 214 |
| MnlI | CCTC | 9 cut(s) | 16, 36, 88, 133, 192, 270, 454, 484, 596 |
| MroXI | GAANNNNTTC | 2 cut(s) | 155, 168 |
| MseI | TTAA | 3 cut(s) | 267, 297, 312 |
| MvnI | CGCG | 2 cut(s) | 178, 469 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 175, 184, 464 |
| NlaIII | CATG | 1 cut(s) | 553 |
| NmuCI | GTSAC | 1 cut(s) | 406 |
| PdmI | GAANNNNTTC | 2 cut(s) | 155, 168 |
| PfeI | GAWTC | 2 cut(s) | 343, 448 |
| PkrI | GCNGC | 2 cut(s) | 466, 571 |
| PleI | GAGTC | 2 cut(s) | 114, 214 |
| PpsI | GAGTC | 2 cut(s) | 114, 214 |
| PspFI | CCCAGC | 1 cut(s) | 105 |
| SaqAI | TTAA | 3 cut(s) | 267, 297, 312 |
| SatI | GCNGC | 2 cut(s) | 465, 570 |
| SchI | GAGTC | 2 cut(s) | 114, 214 |
| SetI | ASST | 7 cut(s) | 8, 111, 156, 362, 408, 416, 499 |
| SfaNI | GCATC | 1 cut(s) | 596 |
| SmlI | CTYRAG | 1 cut(s) | 443 |
| SmoI | CTYRAG | 1 cut(s) | 443 |
| Sse9I | AATT | 5 cut(s) | 233, 288, 377, 471, 578 |
| SsiI | CCGC | 1 cut(s) | 569 |
| SspMI | CTAG | 1 cut(s) | 21 |
| TaiI | ACGT | 1 cut(s) | 408 |
| TaqI | TCGA | 2 cut(s) | 118, 159 |
| TasI | AATT | 5 cut(s) | 233, 288, 377, 471, 578 |
| TauI | GCSGC | 1 cut(s) | 572 |
| TfiI | GAWTC | 2 cut(s) | 343, 448 |
| Tru1I | TTAA | 3 cut(s) | 267, 297, 312 |
| Tru9I | TTAA | 3 cut(s) | 267, 297, 312 |
| TscAI | CASTG | 1 cut(s) | 571 |
| TseFI | GTSAC | 1 cut(s) | 406 |
| TseI | GCWGC | 1 cut(s) | 464 |
| Tsp45I | GTSAC | 1 cut(s) | 406 |
| TspDTI | ATGAA | 2 cut(s) | 56, 177 |
| TspGWI | ACGGA | 1 cut(s) | 355 |
| TspRI | CASTG | 1 cut(s) | 571 |
| XapI | RAATTY | 1 cut(s) | 471 |
| XmnI | GAANNNNTTC | 2 cut(s) | 155, 168 |
| XspI | CTAG | 1 cut(s) | 21 |