Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000021

Physical Location & Seq

Genomic Coordinates Forward (+)

80844737 .. 80846538

Gene Structure 1802 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ34973

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1617 bp

ATGGGAAAAACGTCTTCTTGTCCTTGTAATTCTTATTGTGGCAGAAGAGGTGGTATGCCATTTCTTCACTCTACTCCTCTTCTTGTTGCTGCTGCTGCTTTATTTCATTCTCAATCAAAGGCAACCATATCTAGAGAATCCCACCCTCACCAATCCTCAAGGCTCAAAGTTGAGGATGCTTTGAAGGTGTTCCATGAAATGCTTCGCTCGCGTCCTCTGCCTTCTTCTGTTATCCCTTTCACTCAGATACTGGGTCAACTCGTCAAATTGAAACACTATTCGGCTGTCATCCCTCTCTTTAAACAAATGCTTCTGCGTCGAATTGTTCCTAATCTCTATACTCTCTCTATTGTCATCAACTGCTACTGCAATTTGAATCAAATGGGGTTTGCCTTATCTGTCTTAGGACAATTCTTCAAATTGGGTCTTCAACCAAATGTTATTACCTTCACCACTCTGATCAGCGGCTTTGTTCTCCACAATCAAGTGCCTGAGGCTGCTCGAATTTTCACCAAAATGCTGCAGGCAGGCGCAGGTCATTGTCAGCCCAATGTGTTTACTTTCAGCACGCTAATCAAGGGCTTTTGCAACATGGGAAACAACAGTGCGGCTATTCAGTTTTTGCAAGGATGCGAGCCTAACATAGTTTCATATAGCACCATCATCGACAGTCTTTGCAAGGATGCACTGATTGATCAAGCATTCAACCTCTTCTCAGAAATGATCAGTAGAGGGATGGTCGTGGAAGCCAAAACTGTGGTTCAAACGATGATTCAAAGACATATTGAGCCTGACACGGTTACATACAGCTCCCTTATGGACGGTTACTGTTTGCGAGGAGAAATGTACGAGGCAAGACAAGTTTTTGATCTTATGGTTAGTAAGGGCTCCATGGTTGATGTTCGGAGTTGTAACATATTGATTAACGGATATTGCAAGGGTAAAAAGATCGATCAGGCTTACAAGATTTTCAAGGAAATGCATTGTATGGAACTTGTTCCAAATACAATTACTATTAACACTCTTATTGATGGTTTTTGCAAAGCGGGGAGAATTCAAGAAGCAGAAAAGTTGTTCTCTGAGATGCAAGGTTGTGGCCTGCTTCCAAATGTTCAAACTTATGCTGTGATACTTGATGGCCTGTGTAACAACCAGCAACTTTCTACAGCTGTAGAATTGCTTAGAGAGCTGGAAGCCAGAAAACTGGAACTCAATATTGTAATTTACAATATTATTATTGAAGGTTTGTGCAAAGCTGGGGAAGTTCAGTCTGCAAAAGATCTCTTCTGTGGTGTATCATCTAAACGACTTCAGCCTAATGTGCGCACATACAATATAATGGTTGGTGGACTTTGTCATAATGGCTTAATAATTGAAGCAGAAAAGTTGCTGAGAGAAATGGGAGGGAAAGGATGTTCTCCGGATGGTTGCACCTATAACACCATTATCCGAGGTTTTATCAATAACAATGAGACATCAAGGGCTACGAGACTTGTTCAAGAAATGCTTGAGAGGGGTTTCTCTGCAGATGCATCAACTATGGAATTGATTGTTGATTTATTGTCGAAAGATACAGTAGATCCTGGTTTATTAGCATTGCTTAAAGATTCAGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0000963 GO:0000966 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004016 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009791 GO:0009845 GO:0009975 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0016829 GO:0016849 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048856 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0090351 GO:0090615 GO:0097159 GO:0140053 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

538

Amino Acids

59.54

Weight (kDa)

8.38

Isoelectric Point (pI)

42.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	79 - 124	1.4e-06	PPR repeat family
PPR_2	PF13041	117 - 157	7.9e-07	PPR repeat family
PPR_3	PF13812	140 - 197	1.8e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	142 - 173	1e-06	PPR repeat
PPR_2	PF13041	145 - 197	8.3e-13	PPR repeat family
PPR_1	PF12854	181 - 208	1.2e-08	PPR repeat
PPR_1	PF12854	210 - 241	3.3e-12	PPR repeat
PPR_2	PF13041	213 - 248	3.1e-08	PPR repeat family
PPR	PF01535	216 - 245	7.4e-06	PPR repeat
PPR_2	PF13041	244 - 277	5.4e-06	PPR repeat family
PPR_1	PF12854	261 - 293	1.2e-09	PPR repeat
PPR_2	PF13041	264 - 313	6.9e-13	PPR repeat family
PPR	PF01535	267 - 296	2e-07	PPR repeat
PPR_3	PF13812	288 - 344	7.2e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	296 - 327	1.9e-07	PPR repeat
PPR_2	PF13041	300 - 348	1.4e-15	PPR repeat family
PPR	PF01535	303 - 329	1.6e-06	PPR repeat
PPR_long	PF17177	315 - 421	5.4e-08	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	322 - 379	1e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	331 - 363	5.7e-13	PPR repeat
PPR_2	PF13041	334 - 383	4.2e-18	PPR repeat family
PPR	PF01535	338 - 367	5e-09	PPR repeat
TPR_24	PF23276	340 - 429	1.9e-09	Fungal tetratrico peptide repeats
PPR_1	PF12854	366 - 397	4e-06	PPR repeat
PPR_3	PF13812	393 - 449	1e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	402 - 429	4.1e-08	PPR repeat
PPR_2	PF13041	405 - 453	9.6e-15	PPR repeat family
PPR_1	PF12854	436 - 467	1.8e-10	PPR repeat
PPR	PF01535	443 - 472	6.4e-08	PPR repeat
PPR_2	PF13041	443 - 486	3e-12	PPR repeat family
PPR_1	PF12854	470 - 502	4e-07	PPR repeat
PPR_2	PF13041	474 - 521	6.1e-08	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000021)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12700 AT1G12700 AT1G12700 AT1G62680 AT1G62680 AT1G62720 AT1G63230 AT1G63630 AT1G63630 AT1G64583 AT1G64583 AT3G16710 AT3G16710 AT5G16640 AT5G41170 AT5G41170
fragaria_vesca	FvH4_2g40320 FvH4_3g13950 FvH4_3g31580 FvH4_3g31590 FvH4_3g33650 FvH4_3g33650 FvH4_3g33650 FvH4_3g35200 FvH4_3g36280 FvH4_3g37111 FvH4_3g37480 FvH4_3g37481 FvH4_3g38020 FvH4_3g38070 FvH4_3g38471 FvH4_3g38472 FvH4_3g38590 FvH4_3g38590 FvH4_3g38590 FvH4_3g38931 FvH4_3g38940 FvH4_3g38940 FvH4_3g39650 FvH4_3g39890 FvH4_3g39940 FvH4_3g40100 FvH4_3g40130 FvH4_3g40940 FvH4_3g40940 FvH4_3g40940 FvH4_3g41340 FvH4_3g41820 FvH4_3g42120 FvH4_3g42121 FvH4_3g42430 FvH4_3g42600 FvH4_3g42700 FvH4_3g43150 FvH4_3g43170 FvH4_3g43330 FvH4_3g44300 FvH4_4g22270 FvH4_4g22280 FvH4_5g09470 FvH4_6g52550
malus_domestica	MD03G1099700.v1.1 MD03G1101000.v1.1 MD03G1103400.v1.1 MD03G1103500.v1.1 MD03G1103700.v1.1 MD03G1105300.v1.1 MD03G1106000.v1.1 MD03G1106100.v1.1 MD03G1107100.v1.1 MD03G1108100.v1.1 MD03G1113100.v1.1 MD03G1113300.v1.1 MD03G1113400.v1.1 MD03G1113500.v1.1 MD03G1113600.v1.1 MD03G1113700.v1.1 MD03G1113800.v1.1 MD04G1015600.v1.1 MD11G1115600.v1.1 MD11G1117400.v1.1 MD11G1117500.v1.1 MD11G1122400.v1.1 MD11G1126400.v1.1 MD11G1126500.v1.1 MD11G1128300.v1.1 MD11G1128400.v1.1 MD11G1128600.v1.1 MD11G1128700.v1.1 MD11G1131800.v1.1 MD11G1131900.v1.1 MD11G1132200.v1.1 MD11G1132300.v1.1 MD11G1135500.v1.1
prunus_persica	Prupe.3G114600_v2.0.a1 Prupe.3G114700_v2.0.a1 Prupe.3G138000_v2.0.a1 Prupe.6G080500_v2.0.a1 Prupe.6G081600_v2.0.a1 Prupe.6G086000_v2.0.a1 Prupe.6G087400_v2.0.a1 Prupe.6G087400_v2.0.a1 Prupe.6G087400_v2.0.a1 Prupe.6G087400_v2.0.a1 Prupe.6G087600_v2.0.a1 Prupe.6G088600_v2.0.a1 Prupe.6G088600_v2.0.a1 Prupe.6G088600_v2.0.a1 Prupe.6G088600_v2.0.a1 Prupe.6G090500_v2.0.a1 Prupe.6G090600_v2.0.a1 Prupe.6G091000_v2.0.a1 Prupe.6G091400_v2.0.a1 Prupe.6G091500_v2.0.a1 Prupe.6G093300_v2.0.a1 Prupe.6G094000_v2.0.a1 Prupe.6G094000_v2.0.a1 Prupe.6G094000_v2.0.a1 Prupe.6G094000_v2.0.a1 Prupe.6G106300_v2.0.a1 Prupe.6G117200_v2.0.a1 Prupe.6G117400_v2.0.a1 Prupe.6G195600_v2.0.a1 Prupe.6G195700_v2.0.a1 Prupe.8G027800_v2.0.a1 Prupe.8G078200_v2.0.a1 Prupe.8G078200_v2.0.a1
pyrus_communis	pycom03g08210 pycom03g08430 pycom03g08450 pycom03g08500 pycom03g08510 pycom03g08640 pycom03g08650 pycom03g08660 pycom04g01160 pycom11g09860 pycom11g10660 pycom11g10700 pycom11g10730 pycom11g10740 pycom11g10890 pycom11g10900 pycom11g10910 pycom11g11040 pycom11g11070 pycom11g11080 pycom11g11090 pycom11g11110 pycom11g11130 pycom11g11140 pycom11g11240
rosa_chinensis	RchiOBHm_Chr2g0133531 RchiOBHm_Chr4g0407671 RchiOBHm_Chr5g0027691 RchiOBHm_Chr5g0027731 RchiOBHm_Chr5g0031841 RchiOBHm_Chr5g0041821 RchiOBHm_Chr5g0061091 RchiOBHm_Chr5g0061131 RchiOBHm_Chr5g0061141 RchiOBHm_Chr5g0062111 RchiOBHm_Chr5g0062121 RchiOBHm_Chr5g0062141 RchiOBHm_Chr5g0062151 RchiOBHm_Chr5g0062161 RchiOBHm_Chr5g0062301 RchiOBHm_Chr5g0062311 RchiOBHm_Chr5g0065171 RchiOBHm_Chr5g0066121 RchiOBHm_Chr5g0066211 RchiOBHm_Chr5g0069221 RchiOBHm_Chr5g0069231 RchiOBHm_Chr5g0069241 RchiOBHm_Chr5g0069251 RchiOBHm_Chr5g0069261 RchiOBHm_Chr5g0069321 RchiOBHm_Chr5g0069341 RchiOBHm_Chr5g0069351 RchiOBHm_Chr5g0069571 RchiOBHm_Chr5g0069581 RchiOBHm_Chr5g0069591 RchiOBHm_Chr5g0069601 RchiOBHm_Chr5g0069651 RchiOBHm_Chr5g0070751 RchiOBHm_Chr5g0071481 RchiOBHm_Chr5g0071931 RchiOBHm_Chr5g0071941 RchiOBHm_Chr5g0072771 RchiOBHm_Chr5g0072831 RchiOBHm_Chr5g0072861 RchiOBHm_Chr5g0072871 RchiOBHm_Chr5g0072901 RchiOBHm_Chr5g0072921 RchiOBHm_Chr5g0073691 RchiOBHm_Chr5g0073711 RchiOBHm_Chr5g0073761 RchiOBHm_Chr5g0074141 RchiOBHm_Chr5g0074181 RchiOBHm_Chr5g0074191 RchiOBHm_Chr5g0074201 RchiOBHm_Chr5g0074231 RchiOBHm_Chr5g0074941 RchiOBHm_Chr5g0074951 RchiOBHm_Chr5g0074961 RchiOBHm_Chr5g0074981 RchiOBHm_Chr5g0075791 RchiOBHm_Chr5g0076111 RchiOBHm_Chr5g0076121 RchiOBHm_Chr5g0076231 RchiOBHm_Chr5g0076241 RchiOBHm_Chr5g0076251 RchiOBHm_Chr5g0076261 RchiOBHm_Chr5g0077441 RchiOBHm_Chr5g0077451 RchiOBHm_Chr5g0077481 RchiOBHm_Chr5g0077511 RchiOBHm_Chr5g0077521 RchiOBHm_Chr5g0077541 RchiOBHm_Chr5g0078461 RchiOBHm_Chr5g0078471 RchiOBHm_Chr5g0078541 RchiOBHm_Chr5g0078551 RchiOBHm_Chr5g0078591 RchiOBHm_Chr5g0078611 RchiOBHm_Chr5g0078801 RchiOBHm_Chr5g0078811 RchiOBHm_Chr7g0226411 RchiOBHm_Chr7g0226421
rosa_laevigata	RLG00000001731 RLG00000001921 RLG00000007507 RLG00000008174 RLG00000008512 RLG00000029432 RLG00000033036 RLG00000033038 RLG00000034096 RLG00000035428 RLG00000035433 RLG00000035434 RLG00000035435 RLG00000035535 RLG00000035536 RLG00000035548 RLG00000035751 RLG00000035754 RLG00000035764 RLG00000035882 RLG00000036044 RLG00000036048 RLG00000036060 RLG00000036061 RLG00000036062 RLG00000036063 RLG00000036070 RLG00000036078 RLG00000036079 RLG00000036080 RLG00000036156 RLG00000036218 RLG00000036219 RLG00000036263 RLG00000036264 RLG00000036331 RLG00000036332 RLG00000036333 RLG00000036338 RLG00000036339 RLG00000036344 RLG00000036345 RLG00000036347 RLG00000036348 RLG00000036349 RLG00000036405 RLG00000036416 RLG00000036457 RLG00000036459 RLG00000036515 RLG00000036516 RLG00000036517 RLG00000036646 RLG00000036697 RLG00000036698 RLG00000036699 RLG00000036702 RLG00000036774 RLG00000036775 RLG00000036786 RLG00000036787
rosa_multiflora	Rmu_co8164206.1_g000001 Rmu_co8198940.1_g000001 Rmu_co8222088.1_g000001 Rmu_co8267751.1_g000001 Rmu_co8339831.1_g000001 Rmu_sc0000573.1_g000056 Rmu_sc0000573.1_g000057 Rmu_sc0000848.1_g000018 Rmu_sc0000861.1_g000039 Rmu_sc0000956.1_g000006 Rmu_sc0000956.1_g000007 Rmu_sc0000987.1_g000004 Rmu_sc0001264.1_g000011 Rmu_sc0001264.1_g000023 Rmu_sc0001366.1_g000024 Rmu_sc0001366.1_g000034 Rmu_sc0001647.1_g000023 Rmu_sc0001647.1_g000025 Rmu_sc0002101.1_g000008 Rmu_sc0002149.1_g000019 Rmu_sc0002296.1_g000015 Rmu_sc0002296.1_g000018 Rmu_sc0002627.1_g000002 Rmu_sc0002658.1_g000002 Rmu_sc0002658.1_g000004 Rmu_sc0002658.1_g000005 Rmu_sc0002658.1_g000008 Rmu_sc0003160.1_g000001 Rmu_sc0003160.1_g000002 Rmu_sc0003160.1_g000027 Rmu_sc0003264.1_g000007 Rmu_sc0003323.1_g000018 Rmu_sc0003542.1_g000014 Rmu_sc0003945.1_g000018 Rmu_sc0004140.1_g000044 Rmu_sc0004140.1_g000045 Rmu_sc0004277.1_g000049 Rmu_sc0004277.1_g000050 Rmu_sc0004277.1_g000051 Rmu_sc0004277.1_g000056 Rmu_sc0004277.1_g000059 Rmu_sc0004277.1_g000064 Rmu_sc0004277.1_g000065 Rmu_sc0004277.1_g000066 Rmu_sc0004277.1_g000071 Rmu_sc0004277.1_g000073 Rmu_sc0004277.1_g000074 Rmu_sc0004277.1_g000080 Rmu_sc0004277.1_g000081 Rmu_sc0004277.1_g000082 Rmu_sc0004501.1_g000006 Rmu_sc0004501.1_g000008 Rmu_sc0004501.1_g000009 Rmu_sc0005069.1_g000010 Rmu_sc0005069.1_g000013 Rmu_sc0005069.1_g000028 Rmu_sc0005255.1_g000008 Rmu_sc0005255.1_g000009 Rmu_sc0005860.1_g000003 Rmu_sc0005961.1_g000008 Rmu_sc0005961.1_g000009 Rmu_sc0006031.1_g000026 Rmu_sc0006952.1_g000035 Rmu_sc0006984.1_g000001 Rmu_sc0007385.1_g000011 Rmu_sc0007385.1_g000018 Rmu_sc0007385.1_g000019 Rmu_sc0007385.1_g000025 Rmu_sc0009248.1_g000008 Rmu_sc0009248.1_g000016 Rmu_sc0009685.1_g000001 Rmu_sc0009685.1_g000008 Rmu_sc0009911.1_g000004 Rmu_sc0009988.1_g000002 Rmu_sc0013565.1_g000003 Rmu_sc0013615.1_g000005 Rmu_sc0015509.1_g000001 Rmu_sc0016676.1_g000001 Rmu_sc0019146.1_g000001 Rmu_sc0023658.1_g000001 Rmu_sc0026875.1_g000001 Rmu_sc0032705.1_g000003 Rmu_sc0036016.1_g000001 Rmu_sc0038790.1_g000001 Rmu_sc0038790.1_g000002 Rmu_sc0038790.1_g000003 Rmu_sc0041070.1_g000001 Rmu_sc0041071.1_g000001
rosa_roxburghii	Rroxscaffold_1G00004470 Rroxscaffold_1G00005600 Rroxscaffold_1G00006630 Rroxscaffold_1G00006640 Rroxscaffold_1G00006680 Rroxscaffold_1G00007240 Rroxscaffold_1G00007270 Rroxscaffold_1G00007600 Rroxscaffold_1G00008320 Rroxscaffold_1G00008330 Rroxscaffold_1G00008390 Rroxscaffold_1G00008400 Rroxscaffold_1G00009250 Rroxscaffold_1G00009640 Rroxscaffold_1G00010430 Rroxscaffold_1G00011430 Rroxscaffold_1G00011580 Rroxscaffold_1G00014270 Rroxscaffold_1G00017730 Rroxscaffold_1G00018390 Rroxscaffold_1G00018400 Rroxscaffold_1G00018410 Rroxscaffold_1G00018550 Rroxscaffold_1G00018580 Rroxscaffold_1G00018590 Rroxscaffold_1G00019560 Rroxscaffold_1G00038700 Rroxscaffold_1G00038710 Rroxscaffold_1G00051880 Rroxscaffold_2G00122050 Rroxscaffold_2G00122060 Rroxscaffold_2G00122070 Rroxscaffold_3G00232850 Rroxscaffold_3G00233170 Rroxscaffold_3G00235240 Rroxscaffold_3G00236030 Rroxscaffold_4G00316710 Rroxscaffold_5G00352260 Rroxscaffold_5G00354420 Rroxscaffold_5G00358050 Rroxscaffold_5G00366080 Rroxscaffold_5G00384640 Rroxscaffold_6G00394470
rosa_rugosa	Rorug02G0236100 Rorug02G0312600 Rorug02G0312600 Rorug04G0081200 Rorug04G0099500 Rorug04G0125700 Rorug04G0192800 Rorug04G0192800 Rorug05G0100300 Rorug05G0195500 Rorug05G0337500 Rorug05G0338000 Rorug05G0338100 Rorug05G0338200 Rorug05G0346000 Rorug05G0346100 Rorug05G0346300 Rorug05G0346400 Rorug05G0347500 Rorug05G0347500 Rorug05G0347700 Rorug05G0347800 Rorug05G0376600 Rorug05G0376600 Rorug05G0379000 Rorug05G0396800 Rorug05G0397000 Rorug05G0397000 Rorug05G0397000 Rorug05G0397200 Rorug05G0398400 Rorug05G0398500 Rorug05G0399000 Rorug05G0412600 Rorug05G0412700 Rorug05G0415700 Rorug05G0419800 Rorug05G0419900 Rorug05G0420000 Rorug05G0420100 Rorug05G0420200 Rorug05G0420500 Rorug05G0429200 Rorug05G0429300 Rorug05G0429400 Rorug05G0429600 Rorug05G0429600 Rorug05G0442200 Rorug05G0446100 Rorug05G0446100 Rorug05G0446100 Rorug05G0446100 Rorug05G0446100 Rorug05G0446200 Rorug05G0446200 Rorug05G0446300 Rorug05G0455000 Rorug05G0455000 Rorug05G0455200 Rorug05G0455400 Rorug05G0461000 Rorug06G0021200 Rorug07G0220800 Rorug07G0237100
rosa_samantha	Rh4DG139600 Rh7AG368500 Rh7DG382400
rosa_wichuraiana	Rw0G005990 Rw0G015820 Rw0G023090 Rw1G011560 Rw5G026460 Rw5G037630 Rw5G040110 Rw5G042370 Rw5G042480 Rw5G042500 Rw5G042520 Rw5G043540 Rw5G043840 Rw5G044270 Rw5G044280 Rw5G044310 Rw5G044320 Rw5G044940 Rw5G045650 Rw5G045660 Rw5G045670 Rw5G046760 Rw5G047270 Rw5G047280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1325
Acc36I	ACCTGC	1 cut(s)	524
AccII	CGCG	1 cut(s)	211
AccIII	TCCGGA	1 cut(s)	1420
AciI	CCGC	3 cut(s)	465, 608, 1046
AclWI	GGATC	1 cut(s)	1574
AcsI	RAATTY	2 cut(s)	504, 1053
AcuI	CTGAAG	1 cut(s)	1295
AfaI	GTAC	1 cut(s)	848
AjnI	CCWGG	1 cut(s)	1582
AloI	GAACNNNNNNTCC	2 cut(s)	1399, 1431
AluBI	AGCT	4 cut(s)	810, 1169, 1189, 1256
AluI	AGCT	4 cut(s)	810, 1169, 1189, 1256
Alw26I	GTCTC	2 cut(s)	1466, 1483
AlwI	GGATC	1 cut(s)	1574
AlwNI	CAGNNNCTG	1 cut(s)	250
Aor13HI	TCCGGA	1 cut(s)	1420
AoxI	GGCC	2 cut(s)	1096, 1138
ApeKI	GCWGC	5 cut(s)	89, 92, 95, 497, 520
ApoI	RAATTY	2 cut(s)	504, 1053
Asp700I	GAANNNNTTC	3 cut(s)	188, 201, 996
AspLEI	GCGC	2 cut(s)	533, 1326
AsuHPI	GGTGA	3 cut(s)	140, 442, 502
AxyI	CCTNAGG	1 cut(s)	492
BanII	GRGCYC	1 cut(s)	890
BbsI	GAAGAC	2 cut(s)	6, 419
BbvI	GCAGC	5 cut(s)	76, 79, 82, 484, 507
BccI	CCATC	5 cut(s)	668, 730, 1025, 1130, 1418
BcgI	CGANNNNNNTGC	2 cut(s)	646, 680
BciT130I	CCWGG	1 cut(s)	1584
BclI	TGATCA	3 cut(s)	459, 694, 723
BcoDI	GTCTC	2 cut(s)	1466, 1483
BfaI	CTAG	1 cut(s)	132
BfmI	CTRYAG	4 cut(s)	521, 1164, 1170, 1524
BfuAI	ACCTGC	1 cut(s)	524
BglII	AGATCT	1 cut(s)	1279
BisI	GCNGC	7 cut(s)	90, 93, 96, 466, 498, 521, 609
BlsI	GCNGC	7 cut(s)	91, 94, 97, 467, 499, 522, 610
Bme1390I	CCNGG	1 cut(s)	1584
BmiI	GGNNCC	1 cut(s)	889
BmrFI	CCNGG	1 cut(s)	1584
BmrI	ACTGGG	1 cut(s)	260
BmsI	GCATC	6 cut(s)	166, 620, 673, 1074, 1519, 1541
BmuI	ACTGGG	1 cut(s)	260
BpiI	GAAGAC	2 cut(s)	6, 419
BpuEI	CTTGAG	2 cut(s)	142, 1529
Bsa29I	ATCGAT	1 cut(s)	951
BsaJI	CCNNGG	2 cut(s)	891, 1450
BsaWI	WCCGGW	1 cut(s)	1420
Bse1I	ACTGG	2 cut(s)	255, 1209
Bse21I	CCTNAGG	1 cut(s)	492
Bse3DI	GCAATG	1 cut(s)	1595
BseAI	TCCGGA	1 cut(s)	1420
BseBI	CCWGG	1 cut(s)	1584
BseCI	ATCGAT	1 cut(s)	951
BseDI	CCNNGG	2 cut(s)	891, 1450
BseGI	GGATG	7 cut(s)	181, 288, 635, 688, 741, 1418, 1429
BseMI	GCAATG	1 cut(s)	1595
BseMII	CTCAG	5 cut(s)	257, 483, 729, 1071, 1382
BseNI	ACTGG	2 cut(s)	255, 1209
BseRI	GAGGAG	2 cut(s)	66, 852
BseXI	GCAGC	5 cut(s)	76, 79, 82, 484, 507
BseYI	CCCAGC	1 cut(s)	1256
Bsh1236I	CGCG	1 cut(s)	211
BshFI	GGCC	2 cut(s)	1098, 1140
BshVI	ATCGAT	1 cut(s)	951
BsiSI	CCGG	1 cut(s)	1421
BsmAI	GTCTC	2 cut(s)	1466, 1483
BsmI	GAATGC	1 cut(s)	701
BsnI	GGCC	2 cut(s)	1098, 1140
Bsp1286I	GDGCHC	1 cut(s)	890
Bsp13I	TCCGGA	1 cut(s)	1420
Bsp143I	GATC	8 cut(s)	459, 694, 723, 868, 948, 952, 1279, 1579
Bsp19I	CCATGG	1 cut(s)	891
BspACI	CCGC	3 cut(s)	465, 608, 1046
BspANI	GGCC	2 cut(s)	1098, 1140
BspCNI	CTCAG	5 cut(s)	256, 484, 728, 1072, 1383
BspDI	ATCGAT	1 cut(s)	951
BspEI	TCCGGA	1 cut(s)	1420
BspFNI	CGCG	1 cut(s)	211
BspLI	GGNNCC	1 cut(s)	889
BspMAI	CTGCAG	2 cut(s)	525, 1528
BspMI	ACCTGC	1 cut(s)	524
BspPI	GGATC	1 cut(s)	1574
BsrDI	GCAATG	1 cut(s)	1595
BsrI	ACTGG	2 cut(s)	255, 1209
BssECI	CCNNGG	2 cut(s)	891, 1450
BssMI	GATC	8 cut(s)	459, 694, 723, 868, 948, 952, 1279, 1579
BssT1I	CCWWGG	1 cut(s)	891
Bst2UI	CCWGG	1 cut(s)	1584
Bst4CI	ACNGT	7 cut(s)	605, 671, 757, 799, 824, 830, 1576
Bst6I	CTCTTC	4 cut(s)	40, 84, 716, 1289
BstC8I	GCNNGC	6 cut(s)	209, 525, 529, 569, 635, 1100
BstDEI	CTNAG	7 cut(s)	243, 403, 492, 715, 1080, 1181, 1391
BstDSI	CCRYGG	1 cut(s)	891
BstF5I	GGATG	7 cut(s)	181, 288, 635, 688, 741, 1418, 1429
BstFNI	CGCG	1 cut(s)	211
BstHHI	GCGC	2 cut(s)	533, 1326
BstKTI	GATC	8 cut(s)	462, 697, 726, 871, 951, 955, 1282, 1582
BstMAI	GTCTC	2 cut(s)	1466, 1483
BstMBI	GATC	8 cut(s)	459, 694, 723, 868, 948, 952, 1279, 1579
BstMWI	GCNNNNNNNGC	5 cut(s)	95, 208, 217, 1186, 1321
BstNI	CCWGG	1 cut(s)	1584
BstSCI	CCNGG	1 cut(s)	1582
BstSFI	CTRYAG	4 cut(s)	521, 1164, 1170, 1524
BstUI	CGCG	1 cut(s)	211
BstV1I	GCAGC	5 cut(s)	76, 79, 82, 484, 507
BstV2I	GAAGAC	2 cut(s)	6, 419
BstX2I	RGATCY	2 cut(s)	1279, 1579
BstXI	CCANNNNNNTGG	2 cut(s)	757, 1204
BstYI	RGATCY	2 cut(s)	1279, 1579
Bsu15I	ATCGAT	1 cut(s)	951
Bsu36I	CCTNAGG	1 cut(s)	492
BsuRI	GGCC	2 cut(s)	1098, 1140
BsuTUI	ATCGAT	1 cut(s)	951
BtgI	CCRYGG	1 cut(s)	891
BtsCI	GGATG	7 cut(s)	181, 288, 635, 688, 741, 1418, 1429
BtsIMutI	CAGTG	2 cut(s)	610, 686
BveI	ACCTGC	1 cut(s)	524
Cac8I	GCNNGC	6 cut(s)	209, 525, 529, 569, 635, 1100
CaiI	CAGNNNCTG	1 cut(s)	250
CfoI	GCGC	2 cut(s)	533, 1326
ClaI	ATCGAT	1 cut(s)	951
CseI	GACGC	2 cut(s)	200, 305
Csp6I	GTAC	1 cut(s)	847
CviAII	CATG	3 cut(s)	194, 592, 892
CviQI	GTAC	1 cut(s)	847
DdeI	CTNAG	7 cut(s)	243, 403, 492, 715, 1080, 1181, 1391
DpnI	GATC	8 cut(s)	461, 696, 725, 870, 950, 954, 1281, 1581
DpnII	GATC	8 cut(s)	459, 694, 723, 868, 948, 952, 1279, 1579
DraI	TTTAAA	1 cut(s)	301
Eam1104I	CTCTTC	4 cut(s)	40, 84, 716, 1289
EarI	CTCTTC	4 cut(s)	40, 84, 716, 1289
Eco130I	CCWWGG	1 cut(s)	891
Eco24I	GRGCYC	1 cut(s)	890
Eco57I	CTGAAG	1 cut(s)	1295
Eco81I	CCTNAGG	1 cut(s)	492
EcoRI	GAATTC	1 cut(s)	1053
EcoRII	CCWGG	1 cut(s)	1582
EcoT14I	CCWWGG	1 cut(s)	891
EcoT22I	ATGCAT	2 cut(s)	984, 1534
EcoT38I	GRGCYC	1 cut(s)	890
ErhI	CCWWGG	1 cut(s)	891
FaeI	CATG	3 cut(s)	197, 595, 895
FalI	AAGNNNNNCTT	2 cut(s)	1491, 1523
FatI	CATG	3 cut(s)	193, 591, 891
FauI	CCCGC	1 cut(s)	1039
FbaI	TGATCA	3 cut(s)	459, 694, 723
Fnu4HI	GCNGC	7 cut(s)	90, 93, 96, 466, 498, 521, 609
FokI	GGATG	7 cut(s)	188, 275, 642, 695, 748, 1425, 1436
FriOI	GRGCYC	1 cut(s)	890
Fsp4HI	GCNGC	7 cut(s)	90, 93, 96, 466, 498, 521, 609
FspAI	RTGCGCAY	1 cut(s)	1325
FspBI	CTAG	1 cut(s)	132
FspI	TGCGCA	1 cut(s)	1325
GlaI	GCGC	2 cut(s)	532, 1325
GluI	GCNGC	7 cut(s)	90, 93, 96, 466, 498, 521, 609
GsaI	CCCAGC	1 cut(s)	1260
HaeIII	GGCC	2 cut(s)	1098, 1140
HapII	CCGG	1 cut(s)	1421
HgaI	GACGC	2 cut(s)	200, 305
HhaI	GCGC	2 cut(s)	533, 1326
Hin1II	CATG	3 cut(s)	197, 595, 895
Hin6I	GCGC	2 cut(s)	531, 1324
HinP1I	GCGC	2 cut(s)	531, 1324
HincII	GTYRAC	1 cut(s)	257
HindII	GTYRAC	1 cut(s)	257
HinfI	GANTC	4 cut(s)	137, 376, 772, 1607
HpaII	CCGG	1 cut(s)	1421
HphI	GGTGA	3 cut(s)	140, 442, 502
Hpy166II	GTNNAC	3 cut(s)	257, 558, 1349
Hpy188I	TCNGA	6 cut(s)	246, 459, 718, 906, 1081, 1451
Hpy188III	TCNNGA	4 cut(s)	132, 1058, 1421, 1499
Hpy8I	GTNNAC	3 cut(s)	257, 558, 1349
Hpy99I	CGWCG	1 cut(s)	321
HpyAV	CCTTC	4 cut(s)	178, 231, 457, 1235
HpyCH4III	ACNGT	7 cut(s)	605, 671, 757, 799, 824, 830, 1576
HpyCH4IV	ACGT	1 cut(s)	11
HpyF10VI	GCNNNNNNNGC	5 cut(s)	95, 208, 217, 1186, 1321
HpyF3I	CTNAG	7 cut(s)	243, 403, 492, 715, 1080, 1181, 1391
HpySE526I	ACGT	1 cut(s)	11
Hsp92II	CATG	3 cut(s)	197, 595, 895
HspAI	GCGC	2 cut(s)	531, 1324
Kpn2I	TCCGGA	1 cut(s)	1420
Ksp22I	TGATCA	3 cut(s)	459, 694, 723
Kzo9I	GATC	8 cut(s)	459, 694, 723, 868, 948, 952, 1279, 1579
LmnI	GCTCC	2 cut(s)	815, 893
Lsp1109I	GCAGC	5 cut(s)	76, 79, 82, 484, 507
LweI	GCATC	6 cut(s)	166, 620, 673, 1074, 1519, 1541
MaeI	CTAG	1 cut(s)	132
MaeII	ACGT	1 cut(s)	11
MaeIII	GTNAC	4 cut(s)	799, 824, 911, 1145
MalI	GATC	8 cut(s)	461, 696, 725, 870, 950, 954, 1281, 1581
MboI	GATC	8 cut(s)	459, 694, 723, 868, 948, 952, 1279, 1579
MboII	GAAGA	9 cut(s)	6, 56, 57, 71, 216, 406, 419, 703, 1276
MflI	RGATCY	2 cut(s)	1279, 1579
MhlI	GDGCHC	1 cut(s)	890
Mph1103I	ATGCAT	2 cut(s)	984, 1534
MroI	TCCGGA	1 cut(s)	1420
MroXI	GAANNNNTTC	3 cut(s)	188, 201, 996
MseI	TTAA	5 cut(s)	300, 924, 1017, 1367, 1602
MslI	CAYNNNNRTG	1 cut(s)	515
MspA1I	CMGCKG	2 cut(s)	465, 1169
MspI	CCGG	1 cut(s)	1421
MspR9I	CCNGG	1 cut(s)	1584
Mva1269I	GAATGC	1 cut(s)	701
MvaI	CCWGG	1 cut(s)	1584
MvnI	CGCG	1 cut(s)	211
MwoI	GCNNNNNNNGC	5 cut(s)	95, 208, 217, 1186, 1321
NcoI	CCATGG	1 cut(s)	891
NdeII	GATC	8 cut(s)	459, 694, 723, 868, 948, 952, 1279, 1579
NlaIII	CATG	3 cut(s)	197, 595, 895
NlaIV	GGNNCC	1 cut(s)	889
NsbI	TGCGCA	1 cut(s)	1325
NsiI	ATGCAT	2 cut(s)	984, 1534
PctI	GAATGC	1 cut(s)	701
PdmI	GAANNNNTTC	3 cut(s)	188, 201, 996
PfeI	GAWTC	4 cut(s)	137, 376, 772, 1607
PflFI	GACNNNGTC	1 cut(s)	1353
PkrI	GCNGC	7 cut(s)	91, 94, 97, 467, 499, 522, 610
Psp6I	CCWGG	1 cut(s)	1582
PspFI	CCCAGC	1 cut(s)	1256
PspGI	CCWGG	1 cut(s)	1582
PspN4I	GGNNCC	1 cut(s)	889
PstI	CTGCAG	2 cut(s)	525, 1528
PstNI	CAGNNNCTG	1 cut(s)	250
PsuI	RGATCY	2 cut(s)	1279, 1579
PsyI	GACNNNGTC	1 cut(s)	1353
PvuII	CAGCTG	1 cut(s)	1169
RsaI	GTAC	1 cut(s)	848
RsaNI	GTAC	1 cut(s)	847
RseI	CAYNNNNRTG	1 cut(s)	515
SaqAI	TTAA	5 cut(s)	300, 924, 1017, 1367, 1602
SatI	GCNGC	7 cut(s)	90, 93, 96, 466, 498, 521, 609
Sau3AI	GATC	8 cut(s)	459, 694, 723, 868, 948, 952, 1279, 1579
ScrFI	CCNGG	1 cut(s)	1584
SduI	GDGCHC	1 cut(s)	890
SfaNI	GCATC	6 cut(s)	166, 620, 673, 1074, 1519, 1541
SfcI	CTRYAG	4 cut(s)	521, 1164, 1170, 1524
SmiMI	CAYNNNNRTG	1 cut(s)	515
SmlI	CTYRAG	2 cut(s)	157, 1508
SmoI	CTYRAG	2 cut(s)	157, 1508
SsiI	CCGC	3 cut(s)	465, 608, 1046
SspI	AATATT	2 cut(s)	1216, 1231
SspMI	CTAG	1 cut(s)	132
StyD4I	CCNGG	1 cut(s)	1582
StyI	CCWWGG	1 cut(s)	891
TaaI	ACNGT	7 cut(s)	605, 671, 757, 799, 824, 830, 1576
TaiI	ACGT	1 cut(s)	14
TaqI	TCGA	5 cut(s)	319, 502, 666, 951, 1565
TauI	GCSGC	2 cut(s)	468, 611
TfiI	GAWTC	4 cut(s)	137, 376, 772, 1607
Tru1I	TTAA	5 cut(s)	300, 924, 1017, 1367, 1602
Tru9I	TTAA	5 cut(s)	300, 924, 1017, 1367, 1602
TscAI	CASTG	2 cut(s)	610, 693
TseI	GCWGC	5 cut(s)	89, 92, 95, 497, 520
TspDTI	ATGAA	3 cut(s)	95, 210, 639
TspGWI	ACGGA	1 cut(s)	942
TspRI	CASTG	2 cut(s)	610, 693
Tth111I	GACNNNGTC	1 cut(s)	1353
XapI	RAATTY	2 cut(s)	504, 1053
XbaI	TCTAGA	1 cut(s)	131
XmnI	GAANNNNTTC	3 cut(s)	188, 201, 996
XspI	CTAG	1 cut(s)	132
Zsp2I	ATGCAT	2 cut(s)	984, 1534

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.