Pentatricopeptide repeat-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PPR_long | PF17177 | 2 - 122 | 1.9e-07 | Pentacotripeptide-repeat region of PRORP |
| PPR_1 | PF12854 | 4 - 37 | 2.2e-10 | PPR repeat |
| PPR_2 | PF13041 | 9 - 56 | 2.1e-16 | PPR repeat family |
| PPR | PF01535 | 11 - 41 | 3e-09 | PPR repeat |
| PPR_3 | PF13812 | 32 - 87 | 1e-06 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 39 - 72 | 1.9e-12 | PPR repeat |
| PPR_2 | PF13041 | 43 - 92 | 1.6e-16 | PPR repeat family |
| PPR | PF01535 | 47 - 75 | 4.5e-07 | PPR repeat |
| TPR_24 | PF23276 | 47 - 138 | 4.7e-06 | Fungal tetratrico peptide repeats |
| PPR_1 | PF12854 | 75 - 106 | 6.4e-09 | PPR repeat |
| PPR_3 | PF13812 | 78 - 123 | 5.9e-08 | Pentatricopeptide repeat domain |
| PPR | PF01535 | 82 - 109 | 9.1e-06 | PPR repeat |
| PPR_2 | PF13041 | 86 - 126 | 1.7e-13 | PPR repeat family |
| PPR_1 | PF12854 | 110 - 138 | 3.7e-06 | PPR repeat |
| PPR_3 | PF13812 | 141 - 195 | 9.1e-06 | Pentatricopeptide repeat domain |
| PPR_2 | PF13041 | 148 - 196 | 1.3e-12 | PPR repeat family |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 39 |
| AccB1I | GGYRCC | 1 cut(s) | 124 |
| AcoI | YGGCCR | 1 cut(s) | 223 |
| AcuI | CTGAAG | 1 cut(s) | 400 |
| AfaI | GTAC | 1 cut(s) | 559 |
| AgsI | TTSAA | 2 cut(s) | 242, 627 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 501, 533 |
| AluBI | AGCT | 2 cut(s) | 383, 612 |
| AluI | AGCT | 2 cut(s) | 383, 612 |
| Alw26I | GTCTC | 2 cut(s) | 315, 399 |
| AoxI | GGCC | 2 cut(s) | 223, 490 |
| AspS9I | GGNCC | 2 cut(s) | 490, 641 |
| AsuHPI | GGTGA | 1 cut(s) | 512 |
| AvaII | GGWCC | 1 cut(s) | 641 |
| AxyI | CCTNAGG | 2 cut(s) | 444, 637 |
| BalI | TGGCCA | 1 cut(s) | 225 |
| BanI | GGYRCC | 1 cut(s) | 124 |
| BanII | GRGCYC | 1 cut(s) | 17 |
| BccI | CCATC | 3 cut(s) | 152, 257, 479 |
| BceAI | ACGGC | 1 cut(s) | 71 |
| BcoDI | GTCTC | 2 cut(s) | 315, 399 |
| BfaI | CTAG | 2 cut(s) | 207, 402 |
| Bme18I | GGWCC | 1 cut(s) | 641 |
| BmgT120I | GGNCC | 2 cut(s) | 490, 641 |
| BmiI | GGNNCC | 3 cut(s) | 126, 336, 491 |
| BmsI | GCATC | 2 cut(s) | 178, 201 |
| BsaAI | YACGTR | 1 cut(s) | 561 |
| BsaI | GGTCTC | 1 cut(s) | 399 |
| BsaJI | CCNNGG | 1 cut(s) | 577 |
| Bse1I | ACTGG | 2 cut(s) | 126, 264 |
| Bse21I | CCTNAGG | 2 cut(s) | 444, 637 |
| Bse3DI | GCAATG | 1 cut(s) | 512 |
| BseDI | CCNNGG | 1 cut(s) | 577 |
| BseGI | GGATG | 2 cut(s) | 216, 268 |
| BseMI | GCAATG | 1 cut(s) | 512 |
| BseMII | CTCAG | 1 cut(s) | 458 |
| BseNI | ACTGG | 2 cut(s) | 126, 264 |
| BshFI | GGCC | 2 cut(s) | 225, 492 |
| BshNI | GGYRCC | 1 cut(s) | 124 |
| BslFI | GGGAC | 2 cut(s) | 132, 447 |
| BsmAI | GTCTC | 2 cut(s) | 315, 399 |
| BsmFI | GGGAC | 2 cut(s) | 132, 447 |
| BsnI | GGCC | 2 cut(s) | 225, 492 |
| Bso31I | GGTCTC | 1 cut(s) | 399 |
| Bsp1286I | GDGCHC | 1 cut(s) | 17 |
| Bsp143I | GATC | 1 cut(s) | 75 |
| BspANI | GGCC | 2 cut(s) | 225, 492 |
| BspCNI | CTCAG | 1 cut(s) | 457 |
| BspLI | GGNNCC | 3 cut(s) | 126, 336, 491 |
| BspT107I | GGYRCC | 1 cut(s) | 124 |
| BspTNI | GGTCTC | 1 cut(s) | 399 |
| BsrDI | GCAATG | 1 cut(s) | 512 |
| BsrI | ACTGG | 2 cut(s) | 126, 264 |
| BssECI | CCNNGG | 1 cut(s) | 577 |
| BssMI | GATC | 1 cut(s) | 75 |
| Bst4CI | ACNGT | 1 cut(s) | 571 |
| Bst6I | CTCTTC | 1 cut(s) | 416 |
| BstBAI | YACGTR | 1 cut(s) | 561 |
| BstDEI | CTNAG | 2 cut(s) | 444, 637 |
| BstF5I | GGATG | 2 cut(s) | 216, 268 |
| BstKTI | GATC | 1 cut(s) | 78 |
| BstMAI | GTCTC | 2 cut(s) | 315, 399 |
| BstMBI | GATC | 1 cut(s) | 75 |
| BstSNI | TACGTA | 1 cut(s) | 561 |
| Bsu36I | CCTNAGG | 2 cut(s) | 444, 637 |
| BsuRI | GGCC | 2 cut(s) | 225, 492 |
| BtsCI | GGATG | 2 cut(s) | 216, 268 |
| Cfr13I | GGNCC | 2 cut(s) | 490, 641 |
| Csp6I | GTAC | 1 cut(s) | 558 |
| CviJI | RGCY | 8 cut(s) | 15, 225, 267, 337, 383, 492, 540, 612 |
| CviKI_1 | RGCY | 8 cut(s) | 15, 225, 267, 337, 383, 492, 540, 612 |
| CviQI | GTAC | 1 cut(s) | 558 |
| DdeI | CTNAG | 2 cut(s) | 444, 637 |
| DpnI | GATC | 1 cut(s) | 77 |
| DpnII | GATC | 1 cut(s) | 75 |
| EaeI | YGGCCR | 1 cut(s) | 223 |
| Eam1104I | CTCTTC | 1 cut(s) | 416 |
| EarI | CTCTTC | 1 cut(s) | 416 |
| Eco105I | TACGTA | 1 cut(s) | 561 |
| Eco24I | GRGCYC | 1 cut(s) | 17 |
| Eco31I | GGTCTC | 1 cut(s) | 399 |
| Eco47I | GGWCC | 1 cut(s) | 641 |
| Eco57I | CTGAAG | 1 cut(s) | 400 |
| Eco81I | CCTNAGG | 2 cut(s) | 444, 637 |
| EcoO109I | RGGNCCY | 1 cut(s) | 490 |
| EcoT38I | GRGCYC | 1 cut(s) | 17 |
| FaqI | GGGAC | 2 cut(s) | 132, 447 |
| FokI | GGATG | 2 cut(s) | 223, 275 |
| FriOI | GRGCYC | 1 cut(s) | 17 |
| FspBI | CTAG | 2 cut(s) | 207, 402 |
| HaeIII | GGCC | 2 cut(s) | 225, 492 |
| HinfI | GANTC | 3 cut(s) | 91, 619, 652 |
| HphI | GGTGA | 1 cut(s) | 512 |
| Hpy166II | GTNNAC | 2 cut(s) | 352, 476 |
| Hpy188I | TCNGA | 1 cut(s) | 578 |
| Hpy188III | TCNNGA | 2 cut(s) | 101, 233 |
| Hpy8I | GTNNAC | 2 cut(s) | 352, 476 |
| HpyAV | CCTTC | 3 cut(s) | 322, 362, 666 |
| HpyCH4III | ACNGT | 1 cut(s) | 571 |
| HpyCH4IV | ACGT | 1 cut(s) | 560 |
| HpyCH4V | TGCA | 4 cut(s) | 214, 273, 378, 677 |
| HpyF3I | CTNAG | 2 cut(s) | 444, 637 |
| HpySE526I | ACGT | 1 cut(s) | 560 |
| Kzo9I | GATC | 1 cut(s) | 75 |
| LmnI | GCTCC | 1 cut(s) | 334 |
| LpnPI | CCDG | 7 cut(s) | 86, 107, 141, 205, 245, 246, 431 |
| LweI | GCATC | 2 cut(s) | 178, 201 |
| MaeI | CTAG | 2 cut(s) | 207, 402 |
| MaeII | ACGT | 1 cut(s) | 560 |
| MaeIII | GTNAC | 2 cut(s) | 88, 458 |
| MalI | GATC | 1 cut(s) | 77 |
| MboI | GATC | 1 cut(s) | 75 |
| MboII | GAAGA | 3 cut(s) | 403, 406, 542 |
| MhlI | GDGCHC | 1 cut(s) | 17 |
| MlsI | TGGCCA | 1 cut(s) | 225 |
| MluCI | AATT | 2 cut(s) | 302, 495 |
| MluNI | TGGCCA | 1 cut(s) | 225 |
| MlyI | GAGTC | 2 cut(s) | 85, 613 |
| MnlI | CCTC | 4 cut(s) | 419, 453, 515, 572 |
| Mox20I | TGGCCA | 1 cut(s) | 225 |
| MscI | TGGCCA | 1 cut(s) | 225 |
| MseI | TTAA | 1 cut(s) | 393 |
| MslI | CAYNNNNRTG | 1 cut(s) | 383 |
| Msp20I | TGGCCA | 1 cut(s) | 225 |
| NdeII | GATC | 1 cut(s) | 75 |
| NlaIV | GGNNCC | 3 cut(s) | 126, 336, 491 |
| NmuCI | GTSAC | 1 cut(s) | 88 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 84 |
| PfeI | GAWTC | 1 cut(s) | 652 |
| PleI | GAGTC | 2 cut(s) | 85, 613 |
| PpsI | GAGTC | 2 cut(s) | 85, 613 |
| Ppu21I | YACGTR | 1 cut(s) | 561 |
| PsiI | TTATAA | 1 cut(s) | 39 |
| PspN4I | GGNNCC | 3 cut(s) | 126, 336, 491 |
| PspPI | GGNCC | 2 cut(s) | 490, 641 |
| RsaI | GTAC | 1 cut(s) | 559 |
| RsaNI | GTAC | 1 cut(s) | 558 |
| RseI | CAYNNNNRTG | 1 cut(s) | 383 |
| SaqAI | TTAA | 1 cut(s) | 393 |
| Sau3AI | GATC | 1 cut(s) | 75 |
| Sau96I | GGNCC | 2 cut(s) | 490, 641 |
| SchI | GAGTC | 2 cut(s) | 85, 613 |
| SduI | GDGCHC | 1 cut(s) | 17 |
| SfaNI | GCATC | 2 cut(s) | 178, 201 |
| SinI | GGWCC | 1 cut(s) | 641 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 383 |
| SnaBI | TACGTA | 1 cut(s) | 561 |
| Sse9I | AATT | 2 cut(s) | 302, 495 |
| SspI | AATATT | 2 cut(s) | 343, 358 |
| SspMI | CTAG | 2 cut(s) | 207, 402 |
| TaaI | ACNGT | 1 cut(s) | 571 |
| TaiI | ACGT | 1 cut(s) | 563 |
| TaqI | TCGA | 3 cut(s) | 78, 366, 668 |
| TasI | AATT | 2 cut(s) | 302, 495 |
| TfiI | GAWTC | 1 cut(s) | 652 |
| Tru1I | TTAA | 1 cut(s) | 393 |
| Tru9I | TTAA | 1 cut(s) | 393 |
| TseFI | GTSAC | 1 cut(s) | 88 |
| Tsp45I | GTSAC | 1 cut(s) | 88 |
| VpaK11BI | GGWCC | 1 cut(s) | 641 |
| XspI | CTAG | 2 cut(s) | 207, 402 |