Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0000021

Physical Location & Seq

Genomic Coordinates Forward (+)

10514811 .. 10516676

Gene Structure 1866 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00008320.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1740 bp

ATGCTGAAAATGATGGGAAAAGCTTGTTCTCCTTGTTCTAATTCTTATTGCAGCAGCAATGGCAGAAGAGGTATGCCATTTCTTCACTCTACTCCTCTTGTTGTGGTTGCTGCTGCTCTATTTCATTCTCAATCAAAGGCCACCATATCTACAGAATCCAACCCTCACCCATCCTCAACCAATTTCATGGCTTTATTTCATTCGGGACAAACCCATCGAAATCGATTCTCAAATACCAAAGTGTCTAATCTTGAGGATGCCTCGAAGGTGTTCGATGAAATGCTTCGCAGGCGTCCTCTGCCTTGTGTTGTCCGTTTCACTCAGATCTTGGCTCAACTTGCTAAACTGAAACATTATTCTGCAGTCATCTCTTTGAATATAAAAATGGATGTCTTCACCTTCACCACTCTAATCCACGGCTTTGTTCTCGAGAATCGAGTGGCTGAGGCAACACGACTTTTCAGCAAAATGGTGGAGGCAGGTCATTGTGAGCCGGATGTGCTTACTTTCAACACACTAATAAAGGGCTTTTGCATGATTGGAAACAACAATGCCGCAATTACTTTACTTGGGAAGATGGAAGAAGACGGTTGTCAGCCTAACATAGTTTCCTATAGCACCATCATTAACAGTCTCTGTAAGGATACACTAGCTGATGAAGCAAGGAACCTCTTCTCAGAAATGATTACCAGAGGTATTGCTCCAGACGTTGTTACTTACACCTCTTTGATTCAAGGAGTTTGCAATTTAGGCCAGTGGAAACAAGCTACGAGGTTGATGAATGAAATGGTGAGTAAAGGTATCTTTCCAAATGTACACACCTTCAATATCTTGGTTGATGCTCTTTGTAAGGAGGGGATGGTCGTGGAAGCCAAAATTGTGGTTGACATGATGATTCAAAGACATATTGAGCCTGATACGATTACATACAACTCACTTATGGACGGTTACTGTTTGCGGGGAGAAATGGACAAGGCAAGAGAAGTTTTTGATCTCATGATTAGCAACGGCTCCATGGTTGATGTTCAAAGTTGTAACATATTGATTAATGGATATTGCAAGGGTAAGAAGGTCGATAAGGCTAACGAGATTTTCAAGGAAATGCATCATATGGAACTAGTTCCAGATACCGTTACATATAACACTCTTATTGATGGTCTTTGCAAAGCGGGAAGAATTCAAGAAGCAGAAGAGTTGTTCTCTGAGATGCAAGATTGTGGTCAGCTTCCAAATATTCGAACTTACACTGTGATACTTGATGGCCTGTGTAACAAGCAGCAACTTTCTACGGCAATAGAATTGCTTAAAGAGATGGAAGCCAGCAAATTGCAACTTAATATTGTAGTTTACAGTGTTGTTATTGAAGGTTTGTGCAAAGCTGGAGAAATTCAGTCTGCAAAAGATCTCTTCTGTGGTTTATCATCAAAAGGACTTCAGCCTGATGTGCAGACATACAATATAATGATTCATGGACTTTGTCATCATGGCTTAATAATTGAGGCAGAAAAGTTGCTGAGAGAAATGGGTGGGAAAGGCTGTTCTCCAGATTGTTGGACCTATAACACCATTATCCGAGGTTTTATCAATAACAATGAGACACCAAGGGCTACGAGACTTATTCAAGAAATGCGTGAGAGGGGTTTCTCAGCAGATGCATCGACTATGGAATTGATTGTTGATTTATTGTCGAAGGATACAGTAGATCCTGGTTTATTAGCATGGCTTAAAGATTCAGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0000963 GO:0000966 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004016 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009791 GO:0009845 GO:0009975 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0016829 GO:0016849 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048856 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0090351 GO:0090615 GO:0097159 GO:0140053 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

579

Amino Acids

64.46

Weight (kDa)

6.13

Isoelectric Point (pI)

37.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_3	PF13812	125 - 175	4e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	126 - 158	1.5e-08	PPR repeat
PPR_2	PF13041	130 - 178	1.5e-13	PPR repeat family
PPR_3	PF13812	153 - 211	6.3e-12	Pentatricopeptide repeat domain
PPR_1	PF12854	163 - 194	7.6e-10	PPR repeat
PPR_2	PF13041	165 - 214	2.1e-15	PPR repeat family
PPR_1	PF12854	196 - 228	4.2e-11	PPR repeat
PPR_2	PF13041	201 - 249	9.6e-16	PPR repeat family
PPR_long	PF17177	202 - 336	5.3e-09	Pentacotripeptide-repeat region of PRORP
PPR	PF01535	203 - 233	4.7e-06	PPR repeat
PPR_3	PF13812	224 - 282	6.8e-12	Pentatricopeptide repeat domain
PPR_1	PF12854	231 - 264	2.8e-10	PPR repeat
PPR_2	PF13041	235 - 284	1.2e-19	PPR repeat family
PPR	PF01535	238 - 268	2e-06	PPR repeat
MRP-S27	PF10037	239 - 305	4.8e-07	Mitochondrial 28S ribosomal protein S27
PPR_1	PF12854	266 - 298	8e-10	PPR repeat
PPR_2	PF13041	275 - 318	5e-11	PPR repeat family
PPR_1	PF12854	302 - 333	1.3e-11	PPR repeat
PPR_2	PF13041	305 - 354	2.2e-14	PPR repeat family
PPR	PF01535	308 - 337	6.3e-09	PPR repeat
PPR_long	PF17177	324 - 461	2.2e-09	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	339 - 385	1.1e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	341 - 389	4.6e-17	PPR repeat family
PPR_1	PF12854	342 - 368	1.5e-06	PPR repeat
PPR	PF01535	344 - 370	5.8e-07	PPR repeat
TPR_24	PF23276	363 - 470	6.6e-09	Fungal tetratrico peptide repeats
PPR_1	PF12854	372 - 404	1.9e-16	PPR repeat
PPR_2	PF13041	375 - 424	9.4e-21	PPR repeat family
PPR	PF01535	378 - 407	3e-11	PPR repeat
PPR_1	PF12854	407 - 439	2.5e-07	PPR repeat
PPR_2	PF13041	418 - 459	5.8e-08	PPR repeat family
PPR_2	PF13041	446 - 494	3.1e-15	PPR repeat family
PPR_1	PF12854	476 - 508	4e-12	PPR repeat
PPR	PF01535	484 - 513	7.2e-09	PPR repeat
PPR_2	PF13041	485 - 528	2.5e-13	PPR repeat family
PPR_1	PF12854	511 - 544	8.4e-07	PPR repeat
PPR_2	PF13041	519 - 562	4.7e-07	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000021)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12700 AT1G12700 AT1G12700 AT1G62680 AT1G62680 AT1G62720 AT1G63230 AT1G63630 AT1G63630 AT1G64583 AT1G64583 AT3G16710 AT3G16710 AT5G16640 AT5G41170 AT5G41170
fragaria_vesca	FvH4_2g40320 FvH4_3g13950 FvH4_3g31580 FvH4_3g31590 FvH4_3g33650 FvH4_3g33650 FvH4_3g33650 FvH4_3g35200 FvH4_3g36280 FvH4_3g37111 FvH4_3g37480 FvH4_3g37481 FvH4_3g38020 FvH4_3g38070 FvH4_3g38471 FvH4_3g38472 FvH4_3g38590 FvH4_3g38590 FvH4_3g38590 FvH4_3g38931 FvH4_3g38940 FvH4_3g38940 FvH4_3g39650 FvH4_3g39890 FvH4_3g39940 FvH4_3g40100 FvH4_3g40130 FvH4_3g40940 FvH4_3g40940 FvH4_3g40940 FvH4_3g41340 FvH4_3g41820 FvH4_3g42120 FvH4_3g42121 FvH4_3g42430 FvH4_3g42600 FvH4_3g42700 FvH4_3g43150 FvH4_3g43170 FvH4_3g43330 FvH4_3g44300 FvH4_4g22270 FvH4_4g22280 FvH4_5g09470 FvH4_6g52550
malus_domestica	MD03G1099700.v1.1 MD03G1101000.v1.1 MD03G1103400.v1.1 MD03G1103500.v1.1 MD03G1103700.v1.1 MD03G1105300.v1.1 MD03G1106000.v1.1 MD03G1106100.v1.1 MD03G1107100.v1.1 MD03G1108100.v1.1 MD03G1113100.v1.1 MD03G1113300.v1.1 MD03G1113400.v1.1 MD03G1113500.v1.1 MD03G1113600.v1.1 MD03G1113700.v1.1 MD03G1113800.v1.1 MD04G1015600.v1.1 MD11G1115600.v1.1 MD11G1117400.v1.1 MD11G1117500.v1.1 MD11G1122400.v1.1 MD11G1126400.v1.1 MD11G1126500.v1.1 MD11G1128300.v1.1 MD11G1128400.v1.1 MD11G1128600.v1.1 MD11G1128700.v1.1 MD11G1131800.v1.1 MD11G1131900.v1.1 MD11G1132200.v1.1 MD11G1132300.v1.1 MD11G1135500.v1.1
prunus_persica	Prupe.3G114600_v2.0.a1 Prupe.3G114700_v2.0.a1 Prupe.3G138000_v2.0.a1 Prupe.6G080500_v2.0.a1 Prupe.6G081600_v2.0.a1 Prupe.6G086000_v2.0.a1 Prupe.6G087400_v2.0.a1 Prupe.6G087400_v2.0.a1 Prupe.6G087400_v2.0.a1 Prupe.6G087400_v2.0.a1 Prupe.6G087600_v2.0.a1 Prupe.6G088600_v2.0.a1 Prupe.6G088600_v2.0.a1 Prupe.6G088600_v2.0.a1 Prupe.6G088600_v2.0.a1 Prupe.6G090500_v2.0.a1 Prupe.6G090600_v2.0.a1 Prupe.6G091000_v2.0.a1 Prupe.6G091400_v2.0.a1 Prupe.6G091500_v2.0.a1 Prupe.6G093300_v2.0.a1 Prupe.6G094000_v2.0.a1 Prupe.6G094000_v2.0.a1 Prupe.6G094000_v2.0.a1 Prupe.6G094000_v2.0.a1 Prupe.6G106300_v2.0.a1 Prupe.6G117200_v2.0.a1 Prupe.6G117400_v2.0.a1 Prupe.6G195600_v2.0.a1 Prupe.6G195700_v2.0.a1 Prupe.8G027800_v2.0.a1 Prupe.8G078200_v2.0.a1 Prupe.8G078200_v2.0.a1
pyrus_communis	pycom03g08210 pycom03g08430 pycom03g08450 pycom03g08500 pycom03g08510 pycom03g08640 pycom03g08650 pycom03g08660 pycom04g01160 pycom11g09860 pycom11g10660 pycom11g10700 pycom11g10730 pycom11g10740 pycom11g10890 pycom11g10900 pycom11g10910 pycom11g11040 pycom11g11070 pycom11g11080 pycom11g11090 pycom11g11110 pycom11g11130 pycom11g11140 pycom11g11240
rosa_chinensis	RchiOBHm_Chr2g0133531 RchiOBHm_Chr4g0407671 RchiOBHm_Chr5g0027691 RchiOBHm_Chr5g0027731 RchiOBHm_Chr5g0031841 RchiOBHm_Chr5g0041821 RchiOBHm_Chr5g0061091 RchiOBHm_Chr5g0061131 RchiOBHm_Chr5g0061141 RchiOBHm_Chr5g0062111 RchiOBHm_Chr5g0062121 RchiOBHm_Chr5g0062141 RchiOBHm_Chr5g0062151 RchiOBHm_Chr5g0062161 RchiOBHm_Chr5g0062301 RchiOBHm_Chr5g0062311 RchiOBHm_Chr5g0065171 RchiOBHm_Chr5g0066121 RchiOBHm_Chr5g0066211 RchiOBHm_Chr5g0069221 RchiOBHm_Chr5g0069231 RchiOBHm_Chr5g0069241 RchiOBHm_Chr5g0069251 RchiOBHm_Chr5g0069261 RchiOBHm_Chr5g0069321 RchiOBHm_Chr5g0069341 RchiOBHm_Chr5g0069351 RchiOBHm_Chr5g0069571 RchiOBHm_Chr5g0069581 RchiOBHm_Chr5g0069591 RchiOBHm_Chr5g0069601 RchiOBHm_Chr5g0069651 RchiOBHm_Chr5g0070751 RchiOBHm_Chr5g0071481 RchiOBHm_Chr5g0071931 RchiOBHm_Chr5g0071941 RchiOBHm_Chr5g0072771 RchiOBHm_Chr5g0072831 RchiOBHm_Chr5g0072861 RchiOBHm_Chr5g0072871 RchiOBHm_Chr5g0072901 RchiOBHm_Chr5g0072921 RchiOBHm_Chr5g0073691 RchiOBHm_Chr5g0073711 RchiOBHm_Chr5g0073761 RchiOBHm_Chr5g0074141 RchiOBHm_Chr5g0074181 RchiOBHm_Chr5g0074191 RchiOBHm_Chr5g0074201 RchiOBHm_Chr5g0074231 RchiOBHm_Chr5g0074941 RchiOBHm_Chr5g0074951 RchiOBHm_Chr5g0074961 RchiOBHm_Chr5g0074981 RchiOBHm_Chr5g0075791 RchiOBHm_Chr5g0076111 RchiOBHm_Chr5g0076121 RchiOBHm_Chr5g0076231 RchiOBHm_Chr5g0076241 RchiOBHm_Chr5g0076251 RchiOBHm_Chr5g0076261 RchiOBHm_Chr5g0077441 RchiOBHm_Chr5g0077451 RchiOBHm_Chr5g0077481 RchiOBHm_Chr5g0077511 RchiOBHm_Chr5g0077521 RchiOBHm_Chr5g0077541 RchiOBHm_Chr5g0078461 RchiOBHm_Chr5g0078471 RchiOBHm_Chr5g0078541 RchiOBHm_Chr5g0078551 RchiOBHm_Chr5g0078591 RchiOBHm_Chr5g0078611 RchiOBHm_Chr5g0078801 RchiOBHm_Chr5g0078811 RchiOBHm_Chr7g0226411 RchiOBHm_Chr7g0226421
rosa_laevigata	RLG00000001731 RLG00000001921 RLG00000007507 RLG00000008174 RLG00000008512 RLG00000029432 RLG00000033036 RLG00000033038 RLG00000034096 RLG00000035428 RLG00000035433 RLG00000035434 RLG00000035435 RLG00000035535 RLG00000035536 RLG00000035548 RLG00000035751 RLG00000035754 RLG00000035764 RLG00000035882 RLG00000036044 RLG00000036048 RLG00000036060 RLG00000036061 RLG00000036062 RLG00000036063 RLG00000036070 RLG00000036078 RLG00000036079 RLG00000036080 RLG00000036156 RLG00000036218 RLG00000036219 RLG00000036263 RLG00000036264 RLG00000036331 RLG00000036332 RLG00000036333 RLG00000036338 RLG00000036339 RLG00000036344 RLG00000036345 RLG00000036347 RLG00000036348 RLG00000036349 RLG00000036405 RLG00000036416 RLG00000036457 RLG00000036459 RLG00000036515 RLG00000036516 RLG00000036517 RLG00000036646 RLG00000036697 RLG00000036698 RLG00000036699 RLG00000036702 RLG00000036774 RLG00000036775 RLG00000036786 RLG00000036787
rosa_multiflora	Rmu_co8164206.1_g000001 Rmu_co8198940.1_g000001 Rmu_co8222088.1_g000001 Rmu_co8267751.1_g000001 Rmu_co8339831.1_g000001 Rmu_sc0000573.1_g000056 Rmu_sc0000573.1_g000057 Rmu_sc0000848.1_g000018 Rmu_sc0000861.1_g000039 Rmu_sc0000956.1_g000006 Rmu_sc0000956.1_g000007 Rmu_sc0000987.1_g000004 Rmu_sc0001264.1_g000011 Rmu_sc0001264.1_g000023 Rmu_sc0001366.1_g000024 Rmu_sc0001366.1_g000034 Rmu_sc0001647.1_g000023 Rmu_sc0001647.1_g000025 Rmu_sc0002101.1_g000008 Rmu_sc0002149.1_g000019 Rmu_sc0002296.1_g000015 Rmu_sc0002296.1_g000018 Rmu_sc0002627.1_g000002 Rmu_sc0002658.1_g000002 Rmu_sc0002658.1_g000004 Rmu_sc0002658.1_g000005 Rmu_sc0002658.1_g000008 Rmu_sc0003160.1_g000001 Rmu_sc0003160.1_g000002 Rmu_sc0003160.1_g000027 Rmu_sc0003264.1_g000007 Rmu_sc0003323.1_g000018 Rmu_sc0003542.1_g000014 Rmu_sc0003945.1_g000018 Rmu_sc0004140.1_g000044 Rmu_sc0004140.1_g000045 Rmu_sc0004277.1_g000049 Rmu_sc0004277.1_g000050 Rmu_sc0004277.1_g000051 Rmu_sc0004277.1_g000056 Rmu_sc0004277.1_g000059 Rmu_sc0004277.1_g000064 Rmu_sc0004277.1_g000065 Rmu_sc0004277.1_g000066 Rmu_sc0004277.1_g000071 Rmu_sc0004277.1_g000073 Rmu_sc0004277.1_g000074 Rmu_sc0004277.1_g000080 Rmu_sc0004277.1_g000081 Rmu_sc0004277.1_g000082 Rmu_sc0004501.1_g000006 Rmu_sc0004501.1_g000008 Rmu_sc0004501.1_g000009 Rmu_sc0005069.1_g000010 Rmu_sc0005069.1_g000013 Rmu_sc0005069.1_g000028 Rmu_sc0005255.1_g000008 Rmu_sc0005255.1_g000009 Rmu_sc0005860.1_g000003 Rmu_sc0005961.1_g000008 Rmu_sc0005961.1_g000009 Rmu_sc0006031.1_g000026 Rmu_sc0006952.1_g000035 Rmu_sc0006984.1_g000001 Rmu_sc0007385.1_g000011 Rmu_sc0007385.1_g000018 Rmu_sc0007385.1_g000019 Rmu_sc0007385.1_g000025 Rmu_sc0009248.1_g000008 Rmu_sc0009248.1_g000016 Rmu_sc0009685.1_g000001 Rmu_sc0009685.1_g000008 Rmu_sc0009911.1_g000004 Rmu_sc0009988.1_g000002 Rmu_sc0013565.1_g000003 Rmu_sc0013615.1_g000005 Rmu_sc0015509.1_g000001 Rmu_sc0016676.1_g000001 Rmu_sc0019146.1_g000001 Rmu_sc0023658.1_g000001 Rmu_sc0026875.1_g000001 Rmu_sc0032705.1_g000003 Rmu_sc0036016.1_g000001 Rmu_sc0038790.1_g000001 Rmu_sc0038790.1_g000002 Rmu_sc0038790.1_g000003 Rmu_sc0041070.1_g000001 Rmu_sc0041071.1_g000001
rosa_roxburghii	Rroxscaffold_1G00004470 Rroxscaffold_1G00005600 Rroxscaffold_1G00006630 Rroxscaffold_1G00006640 Rroxscaffold_1G00006680 Rroxscaffold_1G00007240 Rroxscaffold_1G00007270 Rroxscaffold_1G00007600 Rroxscaffold_1G00008320 Rroxscaffold_1G00008330 Rroxscaffold_1G00008390 Rroxscaffold_1G00008400 Rroxscaffold_1G00009250 Rroxscaffold_1G00009640 Rroxscaffold_1G00010430 Rroxscaffold_1G00011430 Rroxscaffold_1G00011580 Rroxscaffold_1G00014270 Rroxscaffold_1G00017730 Rroxscaffold_1G00018390 Rroxscaffold_1G00018400 Rroxscaffold_1G00018410 Rroxscaffold_1G00018550 Rroxscaffold_1G00018580 Rroxscaffold_1G00018590 Rroxscaffold_1G00019560 Rroxscaffold_1G00038700 Rroxscaffold_1G00038710 Rroxscaffold_1G00051880 Rroxscaffold_2G00122050 Rroxscaffold_2G00122060 Rroxscaffold_2G00122070 Rroxscaffold_3G00232850 Rroxscaffold_3G00233170 Rroxscaffold_3G00235240 Rroxscaffold_3G00236030 Rroxscaffold_4G00316710 Rroxscaffold_5G00352260 Rroxscaffold_5G00354420 Rroxscaffold_5G00358050 Rroxscaffold_5G00366080 Rroxscaffold_5G00384640 Rroxscaffold_6G00394470
rosa_rugosa	Rorug02G0236100 Rorug02G0312600 Rorug02G0312600 Rorug04G0081200 Rorug04G0099500 Rorug04G0125700 Rorug04G0192800 Rorug04G0192800 Rorug05G0100300 Rorug05G0195500 Rorug05G0337500 Rorug05G0338000 Rorug05G0338100 Rorug05G0338200 Rorug05G0346000 Rorug05G0346100 Rorug05G0346300 Rorug05G0346400 Rorug05G0347500 Rorug05G0347500 Rorug05G0347700 Rorug05G0347800 Rorug05G0376600 Rorug05G0376600 Rorug05G0379000 Rorug05G0396800 Rorug05G0397000 Rorug05G0397000 Rorug05G0397000 Rorug05G0397200 Rorug05G0398400 Rorug05G0398500 Rorug05G0399000 Rorug05G0412600 Rorug05G0412700 Rorug05G0415700 Rorug05G0419800 Rorug05G0419900 Rorug05G0420000 Rorug05G0420100 Rorug05G0420200 Rorug05G0420500 Rorug05G0429200 Rorug05G0429300 Rorug05G0429400 Rorug05G0429600 Rorug05G0429600 Rorug05G0442200 Rorug05G0446100 Rorug05G0446100 Rorug05G0446100 Rorug05G0446100 Rorug05G0446100 Rorug05G0446200 Rorug05G0446200 Rorug05G0446300 Rorug05G0455000 Rorug05G0455000 Rorug05G0455200 Rorug05G0455400 Rorug05G0461000 Rorug06G0021200 Rorug07G0220800 Rorug07G0237100
rosa_samantha	Rh4DG139600 Rh7AG368500 Rh7DG382400
rosa_wichuraiana	Rw0G005990 Rw0G015820 Rw0G023090 Rw1G011560 Rw5G026460 Rw5G037630 Rw5G040110 Rw5G042370 Rw5G042480 Rw5G042500 Rw5G042520 Rw5G043540 Rw5G043840 Rw5G044270 Rw5G044280 Rw5G044310 Rw5G044320 Rw5G044940 Rw5G045650 Rw5G045660 Rw5G045670 Rw5G046760 Rw5G047270 Rw5G047280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	470
AciI	CCGC	3 cut(s)	555, 958, 1169
AclWI	GGATC	1 cut(s)	1697
AcsI	RAATTY	2 cut(s)	1176, 1386
AcuI	CTGAAG	1 cut(s)	1418
AcyI	GRCGYC	1 cut(s)	292
AfaI	GTAC	1 cut(s)	816
AhlI	ACTAGT	1 cut(s)	1117
AjnI	CCWGG	1 cut(s)	1705
AloI	GAACNNNNNNTCC	2 cut(s)	1522, 1554
AluBI	AGCT	5 cut(s)	23, 653, 767, 1225, 1379
AluI	AGCT	5 cut(s)	23, 653, 767, 1225, 1379
Alw26I	GTCTC	3 cut(s)	638, 1589, 1606
AlwI	GGATC	1 cut(s)	1697
AlwNI	CAGNNNCTG	1 cut(s)	636
Ama87I	CYCGRG	1 cut(s)	428
AoxI	GGCC	3 cut(s)	138, 751, 1261
ApeKI	GCWGC	5 cut(s)	51, 54, 110, 113, 1276
ApoI	RAATTY	2 cut(s)	1176, 1386
AseI	ATTAAT	1 cut(s)	1047
Asp700I	GAANNNNTTC	4 cut(s)	269, 282, 671, 1119
AspS9I	GGNCC	1 cut(s)	1554
AsuHPI	GGTGA	4 cut(s)	158, 388, 394, 802
AsuII	TTCGAA	1 cut(s)	1237
AvaI	CYCGRG	1 cut(s)	428
AvaII	GGWCC	1 cut(s)	1554
BbsI	GAAGAC	2 cut(s)	385, 591
BbvCI	CCTCAGC	1 cut(s)	444
BbvI	GCAGC	5 cut(s)	63, 66, 97, 100, 1288
BccI	CCATC	9 cut(s)	7, 178, 222, 571, 629, 853, 1148, 1253, 1306
BceAI	ACGGC	3 cut(s)	433, 1024, 1305
BcgI	CGANNNNNNTGC	2 cut(s)	1638, 1672
BciT130I	CCWGG	1 cut(s)	1707
BciVI	GTATCC	2 cut(s)	637, 1687
BcoDI	GTCTC	3 cut(s)	638, 1589, 1606
BcuI	ACTAGT	1 cut(s)	1117
BfaI	CTAG	2 cut(s)	650, 1118
BfmI	CTRYAG	3 cut(s)	150, 360, 613
BfuAI	ACCTGC	1 cut(s)	470
BfuI	GTATCC	2 cut(s)	637, 1687
BglII	AGATCT	2 cut(s)	324, 1402
BisI	GCNGC	6 cut(s)	52, 55, 111, 114, 555, 1277
BlsI	GCNGC	6 cut(s)	53, 56, 112, 115, 556, 1278
Bme1390I	CCNGG	1 cut(s)	1707
Bme18I	GGWCC	1 cut(s)	1554
BmeT110I	CYCGRG	1 cut(s)	428
BmgT120I	GGNCC	1 cut(s)	1554
BmiI	GGNNCC	2 cut(s)	668, 1012
BmrFI	CCNGG	1 cut(s)	1707
BmsI	GCATC	6 cut(s)	247, 829, 1114, 1197, 1642, 1664
BoxI	GACNNNNGTC	1 cut(s)	591
BpiI	GAAGAC	2 cut(s)	385, 591
BplI	GAGNNNNNCTC	4 cut(s)	245, 277, 1184, 1216
BpmI	CTGGAG	3 cut(s)	687, 1401, 1527
Bpu10I	CCTNAGC	1 cut(s)	444
Bpu14I	TTCGAA	1 cut(s)	1237
BpuEI	CTTGAG	1 cut(s)	272
Bsa29I	ATCGAT	1 cut(s)	223
BsaHI	GRCGYC	1 cut(s)	292
BsaJI	CCNNGG	4 cut(s)	415, 1014, 1573, 1601
Bse1I	ACTGG	1 cut(s)	754
Bse3DI	GCAATG	1 cut(s)	64
BseBI	CCWGG	1 cut(s)	1707
BseCI	ATCGAT	1 cut(s)	223
BseDI	CCNNGG	4 cut(s)	415, 1014, 1573, 1601
BseGI	GGATG	5 cut(s)	170, 262, 394, 502, 864
BseMI	GCAATG	1 cut(s)	64
BseMII	CTCAG	6 cut(s)	335, 435, 690, 1194, 1505, 1659
BseNI	ACTGG	1 cut(s)	754
BseRI	GAGGAG	1 cut(s)	84
BseXI	GCAGC	5 cut(s)	63, 66, 97, 100, 1288
BsgI	GTGCAG	1 cut(s)	1466
BshFI	GGCC	3 cut(s)	140, 753, 1263
BshVI	ATCGAT	1 cut(s)	223
BsiHKCI	CYCGRG	1 cut(s)	428
BsiSI	CCGG	1 cut(s)	494
BslFI	GGGAC	1 cut(s)	219
BsmAI	GTCTC	3 cut(s)	638, 1589, 1606
BsmFI	GGGAC	1 cut(s)	219
BsnI	GGCC	3 cut(s)	140, 753, 1263
BsoBI	CYCGRG	1 cut(s)	428
Bsp119I	TTCGAA	1 cut(s)	1237
Bsp1407I	TGTACA	1 cut(s)	814
Bsp143I	GATC	4 cut(s)	324, 991, 1402, 1702
Bsp19I	CCATGG	1 cut(s)	1014
BspACI	CCGC	3 cut(s)	555, 958, 1169
BspANI	GGCC	3 cut(s)	140, 753, 1263
BspCNI	CTCAG	6 cut(s)	334, 436, 689, 1195, 1506, 1658
BspDI	ATCGAT	1 cut(s)	223
BspHI	TCATGA	1 cut(s)	996
BspLI	GGNNCC	2 cut(s)	668, 1012
BspMAI	CTGCAG	1 cut(s)	364
BspMI	ACCTGC	1 cut(s)	470
BspPI	GGATC	1 cut(s)	1697
BspT104I	TTCGAA	1 cut(s)	1237
BsrDI	GCAATG	1 cut(s)	64
BsrGI	TGTACA	1 cut(s)	814
BsrI	ACTGG	1 cut(s)	754
BssECI	CCNNGG	4 cut(s)	415, 1014, 1573, 1601
BssMI	GATC	4 cut(s)	324, 991, 1402, 1702
BssNI	GRCGYC	1 cut(s)	292
BssT1I	CCWWGG	2 cut(s)	1014, 1601
Bst2UI	CCWGG	1 cut(s)	1707
Bst4CI	ACNGT	8 cut(s)	590, 632, 947, 953, 1132, 1249, 1352, 1699
Bst6I	CTCTTC	4 cut(s)	61, 677, 1185, 1412
BstACI	GRCGYC	1 cut(s)	292
BstAUI	TGTACA	1 cut(s)	814
BstBI	TTCGAA	1 cut(s)	1237
BstC8I	GCNNGC	2 cut(s)	290, 1321
BstDEI	CTNAG	6 cut(s)	321, 444, 676, 1203, 1514, 1645
BstDSI	CCRYGG	2 cut(s)	415, 1014
BstF5I	GGATG	5 cut(s)	170, 262, 394, 502, 864
BstKTI	GATC	4 cut(s)	327, 994, 1405, 1705
BstMAI	GTCTC	3 cut(s)	638, 1589, 1606
BstMBI	GATC	4 cut(s)	324, 991, 1402, 1702
BstMWI	GCNNNNNNNGC	8 cut(s)	60, 289, 298, 338, 499, 659, 750, 1444
BstNI	CCWGG	1 cut(s)	1707
BstPAI	GACNNNNGTC	1 cut(s)	591
BstSCI	CCNGG	1 cut(s)	1705
BstSFI	CTRYAG	3 cut(s)	150, 360, 613
BstV1I	GCAGC	5 cut(s)	63, 66, 97, 100, 1288
BstV2I	GAAGAC	2 cut(s)	385, 591
BstX2I	RGATCY	3 cut(s)	324, 1402, 1702
BstXI	CCANNNNNNTGG	3 cut(s)	187, 880, 1551
BstYI	RGATCY	3 cut(s)	324, 1402, 1702
Bsu15I	ATCGAT	1 cut(s)	223
BsuI	GTATCC	2 cut(s)	637, 1687
BsuRI	GGCC	3 cut(s)	140, 753, 1263
BsuTUI	ATCGAT	1 cut(s)	223
BtgI	CCRYGG	2 cut(s)	415, 1014
BtsCI	GGATG	5 cut(s)	170, 262, 394, 502, 864
BtsIMutI	CAGTG	3 cut(s)	761, 1245, 1357
BveI	ACCTGC	1 cut(s)	470
Cac8I	GCNNGC	2 cut(s)	290, 1321
CaiI	CAGNNNCTG	1 cut(s)	636
CciI	TCATGA	1 cut(s)	996
Cfr13I	GGNCC	1 cut(s)	1554
ClaI	ATCGAT	1 cut(s)	223
CseI	GACGC	1 cut(s)	281
Csp6I	GTAC	1 cut(s)	815
CviAII	CATG	8 cut(s)	187, 535, 889, 997, 1015, 1469, 1484, 1719
CviQI	GTAC	1 cut(s)	815
DdeI	CTNAG	6 cut(s)	321, 444, 676, 1203, 1514, 1645
DpnI	GATC	4 cut(s)	326, 993, 1404, 1704
DpnII	GATC	4 cut(s)	324, 991, 1402, 1702
Eam1104I	CTCTTC	4 cut(s)	61, 677, 1185, 1412
EarI	CTCTTC	4 cut(s)	61, 677, 1185, 1412
Eco130I	CCWWGG	2 cut(s)	1014, 1601
Eco47I	GGWCC	1 cut(s)	1554
Eco57I	CTGAAG	1 cut(s)	1418
Eco88I	CYCGRG	1 cut(s)	428
EcoRI	GAATTC	1 cut(s)	1176
EcoRII	CCWGG	1 cut(s)	1705
EcoT14I	CCWWGG	2 cut(s)	1014, 1601
EcoT22I	ATGCAT	2 cut(s)	1107, 1657
ErhI	CCWWGG	2 cut(s)	1014, 1601
FaeI	CATG	8 cut(s)	190, 538, 892, 1000, 1018, 1472, 1487, 1722
FaqI	GGGAC	1 cut(s)	219
FatI	CATG	8 cut(s)	186, 534, 888, 996, 1014, 1468, 1483, 1718
FauI	CCCGC	2 cut(s)	951, 1162
FauNDI	CATATG	1 cut(s)	1110
Fnu4HI	GCNGC	6 cut(s)	52, 55, 111, 114, 555, 1277
FokI	GGATG	5 cut(s)	157, 269, 401, 509, 871
Fsp4HI	GCNGC	6 cut(s)	52, 55, 111, 114, 555, 1277
FspBI	CTAG	2 cut(s)	650, 1118
GluI	GCNGC	6 cut(s)	52, 55, 111, 114, 555, 1277
GsuI	CTGGAG	3 cut(s)	687, 1401, 1527
HaeIII	GGCC	3 cut(s)	140, 753, 1263
HapII	CCGG	1 cut(s)	494
HgaI	GACGC	1 cut(s)	281
Hin1I	GRCGYC	1 cut(s)	292
Hin1II	CATG	8 cut(s)	190, 538, 892, 1000, 1018, 1472, 1487, 1722
HincII	GTYRAC	1 cut(s)	886
HindII	GTYRAC	1 cut(s)	886
HindIII	AAGCTT	1 cut(s)	21
HinfI	GANTC	7 cut(s)	155, 225, 433, 730, 895, 1465, 1730
HpaII	CCGG	1 cut(s)	494
HphI	GGTGA	4 cut(s)	158, 388, 394, 802
Hpy166II	GTNNAC	3 cut(s)	817, 886, 1348
Hpy188I	TCNGA	5 cut(s)	324, 679, 1204, 1574, 1739
Hpy8I	GTNNAC	3 cut(s)	817, 886, 1348
HpyAV	CCTTC	6 cut(s)	259, 409, 832, 1063, 1358, 1684
HpyCH4III	ACNGT	8 cut(s)	590, 632, 947, 953, 1132, 1249, 1352, 1699
HpyCH4IV	ACGT	1 cut(s)	708
HpyF10VI	GCNNNNNNNGC	8 cut(s)	60, 289, 298, 338, 499, 659, 750, 1444
HpyF3I	CTNAG	6 cut(s)	321, 444, 676, 1203, 1514, 1645
HpySE526I	ACGT	1 cut(s)	708
Hsp92I	GRCGYC	1 cut(s)	292
Hsp92II	CATG	8 cut(s)	190, 538, 892, 1000, 1018, 1472, 1487, 1722
Kzo9I	GATC	4 cut(s)	324, 991, 1402, 1702
LmnI	GCTCC	2 cut(s)	706, 1016
Lsp1109I	GCAGC	5 cut(s)	63, 66, 97, 100, 1288
LweI	GCATC	6 cut(s)	247, 829, 1114, 1197, 1642, 1664
MaeI	CTAG	2 cut(s)	650, 1118
MaeII	ACGT	1 cut(s)	708
MaeIII	GTNAC	5 cut(s)	712, 947, 1034, 1132, 1268
MalI	GATC	4 cut(s)	326, 993, 1404, 1704
MboI	GATC	4 cut(s)	324, 991, 1402, 1702
MflI	RGATCY	3 cut(s)	324, 1402, 1702
MmeI	TCCRAC	2 cut(s)	183, 1532
Mph1103I	ATGCAT	2 cut(s)	1107, 1657
MroXI	GAANNNNTTC	4 cut(s)	269, 282, 671, 1119
MseI	TTAA	6 cut(s)	627, 1047, 1305, 1335, 1490, 1725
MspI	CCGG	1 cut(s)	494
MspR9I	CCNGG	1 cut(s)	1707
MvaI	CCWGG	1 cut(s)	1707
MwoI	GCNNNNNNNGC	8 cut(s)	60, 289, 298, 338, 499, 659, 750, 1444
NcoI	CCATGG	1 cut(s)	1014
NdeI	CATATG	1 cut(s)	1110
NdeII	GATC	4 cut(s)	324, 991, 1402, 1702
NlaIII	CATG	8 cut(s)	190, 538, 892, 1000, 1018, 1472, 1487, 1722
NlaIV	GGNNCC	2 cut(s)	668, 1012
NsiI	ATGCAT	2 cut(s)	1107, 1657
NspV	TTCGAA	1 cut(s)	1237
PaeR7I	CTCGAG	1 cut(s)	428
PagI	TCATGA	1 cut(s)	996
PdmI	GAANNNNTTC	4 cut(s)	269, 282, 671, 1119
PfeI	GAWTC	7 cut(s)	155, 225, 433, 730, 895, 1465, 1730
PflFI	GACNNNGTC	1 cut(s)	1476
PkrI	GCNGC	6 cut(s)	53, 56, 112, 115, 556, 1278
PshAI	GACNNNNGTC	1 cut(s)	591
PshBI	ATTAAT	1 cut(s)	1047
Psp6I	CCWGG	1 cut(s)	1705
PspGI	CCWGG	1 cut(s)	1705
PspN4I	GGNNCC	2 cut(s)	668, 1012
PspPI	GGNCC	1 cut(s)	1554
PstI	CTGCAG	1 cut(s)	364
PstNI	CAGNNNCTG	1 cut(s)	636
PsuI	RGATCY	3 cut(s)	324, 1402, 1702
PsyI	GACNNNGTC	1 cut(s)	1476
RsaI	GTAC	1 cut(s)	816
RsaNI	GTAC	1 cut(s)	815
SaqAI	TTAA	6 cut(s)	627, 1047, 1305, 1335, 1490, 1725
SatI	GCNGC	6 cut(s)	52, 55, 111, 114, 555, 1277
Sau3AI	GATC	4 cut(s)	324, 991, 1402, 1702
Sau96I	GGNCC	1 cut(s)	1554
ScrFI	CCNGG	1 cut(s)	1707
SfaNI	GCATC	6 cut(s)	247, 829, 1114, 1197, 1642, 1664
SfcI	CTRYAG	3 cut(s)	150, 360, 613
Sfr274I	CTCGAG	1 cut(s)	428
SfuI	TTCGAA	1 cut(s)	1237
SinI	GGWCC	1 cut(s)	1554
SlaI	CTCGAG	1 cut(s)	428
SmlI	CTYRAG	2 cut(s)	251, 428
SmoI	CTYRAG	2 cut(s)	251, 428
SpeI	ACTAGT	1 cut(s)	1117
SsiI	CCGC	3 cut(s)	555, 958, 1169
SspI	AATATT	2 cut(s)	1234, 1339
SspMI	CTAG	2 cut(s)	650, 1118
StyD4I	CCNGG	1 cut(s)	1705
StyI	CCWWGG	2 cut(s)	1014, 1601
TaaI	ACNGT	8 cut(s)	590, 632, 947, 953, 1132, 1249, 1352, 1699
TaiI	ACGT	1 cut(s)	711
TatI	WGTACW	1 cut(s)	814
TauI	GCSGC	1 cut(s)	557
TfiI	GAWTC	7 cut(s)	155, 225, 433, 730, 895, 1465, 1730
Tru1I	TTAA	6 cut(s)	627, 1047, 1305, 1335, 1490, 1725
Tru9I	TTAA	6 cut(s)	627, 1047, 1305, 1335, 1490, 1725
TscAI	CASTG	3 cut(s)	761, 1252, 1357
TseI	GCWGC	5 cut(s)	51, 54, 110, 113, 1276
TspDTI	ATGAA	8 cut(s)	113, 175, 188, 291, 672, 794, 798, 1457
TspGWI	ACGGA	1 cut(s)	302
TspRI	CASTG	3 cut(s)	761, 1252, 1357
Tth111I	GACNNNGTC	1 cut(s)	1476
VpaK11BI	GGWCC	1 cut(s)	1554
VspI	ATTAAT	1 cut(s)	1047
XapI	RAATTY	2 cut(s)	1176, 1386
XhoI	CTCGAG	1 cut(s)	428
XmnI	GAANNNNTTC	4 cut(s)	269, 282, 671, 1119
XspI	CTAG	2 cut(s)	650, 1118
Zsp2I	ATGCAT	2 cut(s)	1107, 1657

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.