Pentatricopeptide repeat-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Cofilin_ADF | PF00241 | 7 - 138 | 2.9e-41 | Cofilin/tropomyosin-type actin-binding protein |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 109 |
| Acc36I | ACCTGC | 1 cut(s) | 109 |
| AciI | CCGC | 3 cut(s) | 11, 82, 171 |
| AclWI | GGATC | 1 cut(s) | 396 |
| AcoI | YGGCCR | 1 cut(s) | 3 |
| AgsI | TTSAA | 3 cut(s) | 64, 97, 331 |
| AluBI | AGCT | 5 cut(s) | 149, 156, 315, 361, 417 |
| AluI | AGCT | 5 cut(s) | 149, 156, 315, 361, 417 |
| AlwI | GGATC | 1 cut(s) | 396 |
| AoxI | GGCC | 3 cut(s) | 3, 66, 366 |
| ApeKI | GCWGC | 1 cut(s) | 361 |
| AspS9I | GGNCC | 1 cut(s) | 270 |
| AsuHPI | GGTGA | 4 cut(s) | 133, 152, 160, 301 |
| AvaII | GGWCC | 1 cut(s) | 270 |
| BalI | TGGCCA | 1 cut(s) | 5 |
| BbsI | GAAGAC | 2 cut(s) | 168, 170 |
| BbvI | GCAGC | 1 cut(s) | 348 |
| BccI | CCATC | 2 cut(s) | 338, 379 |
| BciVI | GTATCC | 1 cut(s) | 359 |
| BfmI | CTRYAG | 1 cut(s) | 362 |
| BfuAI | ACCTGC | 1 cut(s) | 109 |
| BfuI | GTATCC | 1 cut(s) | 359 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 11 |
| BisI | GCNGC | 2 cut(s) | 12, 362 |
| BlsI | GCNGC | 2 cut(s) | 13, 363 |
| Bme18I | GGWCC | 1 cut(s) | 270 |
| BmgT120I | GGNCC | 1 cut(s) | 270 |
| BmiI | GGNNCC | 1 cut(s) | 272 |
| BmsI | GCATC | 1 cut(s) | 23 |
| BpiI | GAAGAC | 2 cut(s) | 168, 170 |
| Bse3DI | GCAATG | 1 cut(s) | 261 |
| BseGI | GGATG | 2 cut(s) | 37, 349 |
| BseMI | GCAATG | 1 cut(s) | 261 |
| BseMII | CTCAG | 1 cut(s) | 372 |
| BseRI | GAGGAG | 1 cut(s) | 119 |
| BseXI | GCAGC | 1 cut(s) | 348 |
| BshFI | GGCC | 3 cut(s) | 5, 68, 368 |
| BslFI | GGGAC | 1 cut(s) | 256 |
| BsmFI | GGGAC | 1 cut(s) | 256 |
| BsmI | GAATGC | 1 cut(s) | 197 |
| BsnI | GGCC | 3 cut(s) | 5, 68, 368 |
| Bsp143I | GATC | 1 cut(s) | 388 |
| BspACI | CCGC | 3 cut(s) | 11, 82, 171 |
| BspANI | GGCC | 3 cut(s) | 5, 68, 368 |
| BspCNI | CTCAG | 1 cut(s) | 373 |
| BspLI | GGNNCC | 1 cut(s) | 272 |
| BspMAI | CTGCAG | 1 cut(s) | 366 |
| BspMI | ACCTGC | 1 cut(s) | 109 |
| BspPI | GGATC | 1 cut(s) | 396 |
| BsrDI | GCAATG | 1 cut(s) | 261 |
| BssMI | GATC | 1 cut(s) | 388 |
| Bst4CI | ACNGT | 1 cut(s) | 239 |
| BstC8I | GCNNGC | 4 cut(s) | 147, 313, 366, 415 |
| BstDEI | CTNAG | 1 cut(s) | 381 |
| BstF5I | GGATG | 2 cut(s) | 37, 349 |
| BstKTI | GATC | 1 cut(s) | 391 |
| BstMBI | GATC | 1 cut(s) | 388 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 11 |
| BstSFI | CTRYAG | 1 cut(s) | 362 |
| BstV1I | GCAGC | 1 cut(s) | 348 |
| BstV2I | GAAGAC | 2 cut(s) | 168, 170 |
| BstX2I | RGATCY | 1 cut(s) | 388 |
| BstYI | RGATCY | 1 cut(s) | 388 |
| BsuI | GTATCC | 1 cut(s) | 359 |
| BsuRI | GGCC | 3 cut(s) | 5, 68, 368 |
| BtsCI | GGATG | 2 cut(s) | 37, 349 |
| BtsIMutI | CAGTG | 1 cut(s) | 369 |
| BveI | ACCTGC | 1 cut(s) | 109 |
| Cac8I | GCNNGC | 4 cut(s) | 147, 313, 366, 415 |
| Cfr13I | GGNCC | 1 cut(s) | 270 |
| CviAII | CATG | 1 cut(s) | 267 |
| CviJI | RGCY | 9 cut(s) | 5, 68, 145, 149, 156, 315, 361, 368, 417 |
| CviKI_1 | RGCY | 9 cut(s) | 5, 68, 145, 149, 156, 315, 361, 368, 417 |
| DdeI | CTNAG | 1 cut(s) | 381 |
| DpnI | GATC | 1 cut(s) | 390 |
| DpnII | GATC | 1 cut(s) | 388 |
| EaeI | YGGCCR | 1 cut(s) | 3 |
| Eco47I | GGWCC | 1 cut(s) | 270 |
| FaeI | CATG | 1 cut(s) | 270 |
| FaiI | YATR | 6 cut(s) | 89, 159, 201, 210, 268, 309 |
| FaqI | GGGAC | 1 cut(s) | 256 |
| FatI | CATG | 1 cut(s) | 266 |
| Fnu4HI | GCNGC | 2 cut(s) | 12, 362 |
| FokI | GGATG | 2 cut(s) | 44, 356 |
| Fsp4HI | GCNGC | 2 cut(s) | 12, 362 |
| GluI | GCNGC | 2 cut(s) | 12, 362 |
| HaeIII | GGCC | 3 cut(s) | 5, 68, 368 |
| Hin1II | CATG | 1 cut(s) | 270 |
| HphI | GGTGA | 4 cut(s) | 133, 152, 160, 301 |
| Hpy188I | TCNGA | 1 cut(s) | 243 |
| Hpy188III | TCNNGA | 4 cut(s) | 18, 97, 331, 392 |
| HpyAV | CCTTC | 2 cut(s) | 58, 313 |
| HpyCH4III | ACNGT | 1 cut(s) | 239 |
| HpyCH4V | TGCA | 5 cut(s) | 42, 195, 266, 311, 364 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 11 |
| HpyF3I | CTNAG | 1 cut(s) | 381 |
| Hsp92II | CATG | 1 cut(s) | 270 |
| Kzo9I | GATC | 1 cut(s) | 388 |
| LpnPI | CCDG | 7 cut(s) | 104, 159, 195, 235, 288, 310, 350 |
| Lsp1109I | GCAGC | 1 cut(s) | 348 |
| LweI | GCATC | 1 cut(s) | 23 |
| MaeIII | GTNAC | 1 cut(s) | 223 |
| MalI | GATC | 1 cut(s) | 390 |
| MboI | GATC | 1 cut(s) | 388 |
| MboII | GAAGA | 3 cut(s) | 170, 173, 250 |
| MflI | RGATCY | 1 cut(s) | 388 |
| MlsI | TGGCCA | 1 cut(s) | 5 |
| MluCI | AATT | 2 cut(s) | 134, 338 |
| MluNI | TGGCCA | 1 cut(s) | 5 |
| MnlI | CCTC | 1 cut(s) | 97 |
| Mox20I | TGGCCA | 1 cut(s) | 5 |
| MscI | TGGCCA | 1 cut(s) | 5 |
| Msp20I | TGGCCA | 1 cut(s) | 5 |
| Mva1269I | GAATGC | 1 cut(s) | 197 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 11 |
| NdeII | GATC | 1 cut(s) | 388 |
| NlaIII | CATG | 1 cut(s) | 270 |
| NlaIV | GGNNCC | 1 cut(s) | 272 |
| NmuCI | GTSAC | 1 cut(s) | 223 |
| PaqCI | CACCTGC | 1 cut(s) | 109 |
| PctI | GAATGC | 1 cut(s) | 197 |
| PkrI | GCNGC | 2 cut(s) | 13, 363 |
| PspN4I | GGNNCC | 1 cut(s) | 272 |
| PspPI | GGNCC | 1 cut(s) | 270 |
| PstI | CTGCAG | 1 cut(s) | 366 |
| PsuI | RGATCY | 1 cut(s) | 388 |
| SatI | GCNGC | 2 cut(s) | 12, 362 |
| Sau3AI | GATC | 1 cut(s) | 388 |
| Sau96I | GGNCC | 1 cut(s) | 270 |
| SetI | ASST | 8 cut(s) | 123, 142, 151, 158, 317, 329, 363, 419 |
| SfaNI | GCATC | 1 cut(s) | 23 |
| SfcI | CTRYAG | 1 cut(s) | 362 |
| SinI | GGWCC | 1 cut(s) | 270 |
| Sse9I | AATT | 2 cut(s) | 134, 338 |
| SsiI | CCGC | 3 cut(s) | 11, 82, 171 |
| TaaI | ACNGT | 1 cut(s) | 239 |
| TaqI | TCGA | 1 cut(s) | 317 |
| TasI | AATT | 2 cut(s) | 134, 338 |
| TauI | GCSGC | 1 cut(s) | 14 |
| TscAI | CASTG | 1 cut(s) | 376 |
| TseFI | GTSAC | 1 cut(s) | 223 |
| TseI | GCWGC | 1 cut(s) | 361 |
| Tsp45I | GTSAC | 1 cut(s) | 223 |
| TspDTI | ATGAA | 4 cut(s) | 76, 174, 204, 250 |
| TspRI | CASTG | 1 cut(s) | 376 |
| VpaK11BI | GGWCC | 1 cut(s) | 270 |