Pentatricopeptide repeat-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PPR_2 | PF13041 | 129 - 176 | 1.5e-07 | PPR repeat family |
| PPR_1 | PF12854 | 199 - 230 | 1.1e-09 | PPR repeat |
| PPR_3 | PF13812 | 200 - 250 | 7e-10 | Pentatricopeptide repeat domain |
| PPR_2 | PF13041 | 201 - 250 | 2.5e-15 | PPR repeat family |
| PPR_long | PF17177 | 216 - 347 | 1.5e-09 | Pentacotripeptide-repeat region of PRORP |
| PPR_1 | PF12854 | 233 - 251 | 1.3e-06 | PPR repeat |
| PPR_2 | PF13041 | 261 - 288 | 1.3e-06 | PPR repeat family |
| PPR_3 | PF13812 | 263 - 318 | 1.9e-08 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 270 - 302 | 1e-07 | PPR repeat |
| PPR_2 | PF13041 | 274 - 323 | 7.6e-18 | PPR repeat family |
| PPR_1 | PF12854 | 305 - 337 | 7.7e-10 | PPR repeat |
| TPR_24 | PF23276 | 314 - 422 | 3.1e-06 | Fungal tetratrico peptide repeats |
| PPR_2 | PF13041 | 336 - 374 | 3.3e-09 | PPR repeat family |
| PPR_3 | PF13812 | 384 - 440 | 1e-06 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 392 - 421 | 1.3e-08 | PPR repeat |
| PPR_2 | PF13041 | 396 - 444 | 1.9e-16 | PPR repeat family |
| PPR_3 | PF13812 | 425 - 475 | 1.2e-08 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 427 - 459 | 1.1e-10 | PPR repeat |
| PPR | PF01535 | 434 - 463 | 2.9e-09 | PPR repeat |
| PPR_2 | PF13041 | 439 - 477 | 5.8e-12 | PPR repeat family |
| PPR_1 | PF12854 | 461 - 494 | 3.2e-07 | PPR repeat |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 2 cut(s) | 559, 933 |
| AccII | CGCG | 2 cut(s) | 271, 1068 |
| AciI | CCGC | 3 cut(s) | 608, 1068, 1297 |
| AclI | AACGTT | 1 cut(s) | 654 |
| AclWI | GGATC | 2 cut(s) | 62, 1547 |
| AcoI | YGGCCR | 1 cut(s) | 1069 |
| AcsI | RAATTY | 4 cut(s) | 210, 872, 1042, 1131 |
| AcuI | CTGAAG | 2 cut(s) | 292, 1158 |
| AfaI | GTAC | 4 cut(s) | 395, 836, 941, 1065 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 631 |
| AflIII | ACRYGT | 1 cut(s) | 936 |
| AluBI | AGCT | 4 cut(s) | 316, 1106, 1177, 1352 |
| AluI | AGCT | 4 cut(s) | 316, 1106, 1177, 1352 |
| Alw26I | GTCTC | 1 cut(s) | 90 |
| AlwI | GGATC | 2 cut(s) | 62, 1547 |
| AoxI | GGCC | 7 cut(s) | 141, 552, 704, 1069, 1111, 1168, 1336 |
| ApeKI | GCWGC | 2 cut(s) | 5, 755 |
| ApoI | RAATTY | 4 cut(s) | 210, 872, 1042, 1131 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 295, 327 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 200 |
| AspS9I | GGNCC | 1 cut(s) | 587 |
| AsuC2I | CCSGG | 1 cut(s) | 1231 |
| AsuHPI | GGTGA | 3 cut(s) | 493, 613, 1396 |
| AvaII | GGWCC | 1 cut(s) | 587 |
| BaeGI | GKGCMC | 1 cut(s) | 120 |
| BbvI | GCAGC | 2 cut(s) | 17, 767 |
| BccI | CCATC | 3 cut(s) | 367, 679, 1103 |
| BceAI | ACGGC | 3 cut(s) | 411, 538, 1155 |
| BciVI | GTATCC | 1 cut(s) | 1537 |
| BcnI | CCSGG | 1 cut(s) | 1231 |
| BcoDI | GTCTC | 1 cut(s) | 90 |
| BfaI | CTAG | 2 cut(s) | 89, 1184 |
| BfmI | CTRYAG | 1 cut(s) | 421 |
| BfuI | GTATCC | 1 cut(s) | 1537 |
| BisI | GCNGC | 3 cut(s) | 6, 756, 1069 |
| BlsI | GCNGC | 3 cut(s) | 7, 757, 1070 |
| Bme1390I | CCNGG | 1 cut(s) | 1231 |
| Bme18I | GGWCC | 1 cut(s) | 587 |
| BmgT120I | GGNCC | 1 cut(s) | 587 |
| BmiI | GGNNCC | 1 cut(s) | 589 |
| BmrFI | CCNGG | 1 cut(s) | 1231 |
| BmsI | GCATC | 1 cut(s) | 226 |
| BpuMI | CCSGG | 1 cut(s) | 1231 |
| BsaAI | YACGTR | 2 cut(s) | 834, 939 |
| BsaI | GGTCTC | 1 cut(s) | 90 |
| BsaJI | CCNNGG | 3 cut(s) | 549, 1230, 1423 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 631 |
| Bse1I | ACTGG | 2 cut(s) | 777, 1149 |
| Bse3DI | GCAATG | 2 cut(s) | 8, 649 |
| BseDI | CCNNGG | 3 cut(s) | 549, 1230, 1423 |
| BseGI | GGATG | 3 cut(s) | 241, 690, 1075 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 631 |
| BseMI | GCAATG | 2 cut(s) | 8, 649 |
| BseNI | ACTGG | 2 cut(s) | 777, 1149 |
| BseRI | GAGGAG | 6 cut(s) | 149, 152, 200, 499, 1391, 1424 |
| BseSI | GKGCMC | 1 cut(s) | 120 |
| BseXI | GCAGC | 2 cut(s) | 17, 767 |
| BsgI | GTGCAG | 1 cut(s) | 774 |
| Bsh1236I | CGCG | 2 cut(s) | 271, 1068 |
| BshFI | GGCC | 7 cut(s) | 143, 554, 706, 1071, 1113, 1170, 1338 |
| BsiSI | CCGG | 1 cut(s) | 1230 |
| BslFI | GGGAC | 2 cut(s) | 573, 783 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 631 |
| BsmAI | GTCTC | 1 cut(s) | 90 |
| BsmFI | GGGAC | 2 cut(s) | 573, 783 |
| BsnI | GGCC | 7 cut(s) | 143, 554, 706, 1071, 1113, 1170, 1338 |
| Bso31I | GGTCTC | 1 cut(s) | 90 |
| Bsp1286I | GDGCHC | 1 cut(s) | 120 |
| Bsp143I | GATC | 4 cut(s) | 67, 538, 1011, 1552 |
| BspACI | CCGC | 3 cut(s) | 608, 1068, 1297 |
| BspANI | GGCC | 7 cut(s) | 143, 554, 706, 1071, 1113, 1170, 1338 |
| BspFNI | CGCG | 2 cut(s) | 271, 1068 |
| BspLI | GGNNCC | 1 cut(s) | 589 |
| BspPI | GGATC | 2 cut(s) | 62, 1547 |
| BspTNI | GGTCTC | 1 cut(s) | 90 |
| BsrDI | GCAATG | 2 cut(s) | 8, 649 |
| BsrI | ACTGG | 2 cut(s) | 777, 1149 |
| BssECI | CCNNGG | 3 cut(s) | 549, 1230, 1423 |
| BssMI | GATC | 4 cut(s) | 67, 538, 1011, 1552 |
| BssT1I | CCWWGG | 1 cut(s) | 1423 |
| Bst4CI | ACNGT | 4 cut(s) | 333, 596, 1549, 1593 |
| Bst6I | CTCTTC | 2 cut(s) | 1026, 1267 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1001 |
| BstBAI | YACGTR | 2 cut(s) | 834, 939 |
| BstC8I | GCNNGC | 3 cut(s) | 749, 753, 987 |
| BstDEI | CTNAG | 1 cut(s) | 677 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 629 |
| BstF5I | GGATG | 3 cut(s) | 241, 690, 1075 |
| BstFNI | CGCG | 2 cut(s) | 271, 1068 |
| BstKTI | GATC | 4 cut(s) | 70, 541, 1014, 1555 |
| BstMAI | GTCTC | 1 cut(s) | 90 |
| BstMBI | GATC | 4 cut(s) | 67, 538, 1011, 1552 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 268, 277, 1001, 1034, 1335 |
| BstNSI | RCATGY | 1 cut(s) | 1256 |
| BstSCI | CCNGG | 1 cut(s) | 1229 |
| BstSFI | CTRYAG | 1 cut(s) | 421 |
| BstSLI | GKGCMC | 1 cut(s) | 120 |
| BstSNI | TACGTA | 1 cut(s) | 834 |
| BstUI | CGCG | 2 cut(s) | 271, 1068 |
| BstV1I | GCAGC | 2 cut(s) | 17, 767 |
| BstX2I | RGATCY | 1 cut(s) | 1552 |
| BstYI | RGATCY | 1 cut(s) | 1552 |
| BsuI | GTATCC | 1 cut(s) | 1537 |
| BsuRI | GGCC | 7 cut(s) | 143, 554, 706, 1071, 1113, 1170, 1338 |
| BtsCI | GGATG | 3 cut(s) | 241, 690, 1075 |
| BtsI | GCAGTG | 1 cut(s) | 1002 |
| BtsIMutI | CAGTG | 6 cut(s) | 120, 592, 792, 1002, 1142, 1589 |
| Cac8I | GCNNGC | 3 cut(s) | 749, 753, 987 |
| Cfr13I | GGNCC | 1 cut(s) | 587 |
| CseI | GACGC | 1 cut(s) | 260 |
| Csp6I | GTAC | 4 cut(s) | 394, 835, 940, 1064 |
| CviAII | CATG | 1 cut(s) | 1253 |
| CviQI | GTAC | 4 cut(s) | 394, 835, 940, 1064 |
| DdeI | CTNAG | 1 cut(s) | 677 |
| DpnI | GATC | 4 cut(s) | 69, 540, 1013, 1554 |
| DpnII | GATC | 4 cut(s) | 67, 538, 1011, 1552 |
| DraI | TTTAAA | 1 cut(s) | 1366 |
| EaeI | YGGCCR | 1 cut(s) | 1069 |
| Eam1104I | CTCTTC | 2 cut(s) | 1026, 1267 |
| EarI | CTCTTC | 2 cut(s) | 1026, 1267 |
| Eco105I | TACGTA | 1 cut(s) | 834 |
| Eco130I | CCWWGG | 1 cut(s) | 1423 |
| Eco147I | AGGCCT | 4 cut(s) | 143, 554, 706, 1338 |
| Eco31I | GGTCTC | 1 cut(s) | 90 |
| Eco47I | GGWCC | 1 cut(s) | 587 |
| Eco57I | CTGAAG | 2 cut(s) | 292, 1158 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 629 |
| EcoO109I | RGGNCCY | 1 cut(s) | 587 |
| EcoT14I | CCWWGG | 1 cut(s) | 1423 |
| ErhI | CCWWGG | 1 cut(s) | 1423 |
| FaeI | CATG | 1 cut(s) | 1256 |
| FaqI | GGGAC | 2 cut(s) | 573, 783 |
| FatI | CATG | 1 cut(s) | 1252 |
| FblI | GTMKAC | 2 cut(s) | 559, 933 |
| Fnu4HI | GCNGC | 3 cut(s) | 6, 756, 1069 |
| FokI | GGATG | 3 cut(s) | 248, 697, 1062 |
| Fsp4HI | GCNGC | 3 cut(s) | 6, 756, 1069 |
| FspBI | CTAG | 2 cut(s) | 89, 1184 |
| GluI | GCNGC | 3 cut(s) | 6, 756, 1069 |
| HaeIII | GGCC | 7 cut(s) | 143, 554, 706, 1071, 1113, 1170, 1338 |
| HapII | CCGG | 1 cut(s) | 1230 |
| HgaI | GACGC | 1 cut(s) | 260 |
| Hin1II | CATG | 1 cut(s) | 1256 |
| HinfI | GANTC | 8 cut(s) | 15, 433, 847, 910, 956, 1241, 1529, 1586 |
| HpaII | CCGG | 1 cut(s) | 1230 |
| HphI | GGTGA | 3 cut(s) | 493, 613, 1396 |
| Hpy166II | GTNNAC | 4 cut(s) | 560, 837, 934, 1322 |
| Hpy188I | TCNGA | 5 cut(s) | 340, 822, 846, 1054, 1138 |
| Hpy188III | TCNNGA | 5 cut(s) | 65, 89, 386, 1079, 1583 |
| Hpy8I | GTNNAC | 4 cut(s) | 560, 837, 934, 1322 |
| HpyCH4III | ACNGT | 4 cut(s) | 333, 596, 1549, 1593 |
| HpyCH4IV | ACGT | 4 cut(s) | 654, 833, 938, 1579 |
| HpyCH4V | TGCA | 8 cut(s) | 642, 747, 755, 966, 1060, 1224, 1247, 1329 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 268, 277, 1001, 1034, 1335 |
| HpyF3I | CTNAG | 1 cut(s) | 677 |
| HpySE526I | ACGT | 4 cut(s) | 654, 833, 938, 1579 |
| Hsp92II | CATG | 1 cut(s) | 1256 |
| Kzo9I | GATC | 4 cut(s) | 67, 538, 1011, 1552 |
| LmnI | GCTCC | 1 cut(s) | 388 |
| Lsp1109I | GCAGC | 2 cut(s) | 17, 767 |
| LweI | GCATC | 1 cut(s) | 226 |
| MaeI | CTAG | 2 cut(s) | 89, 1184 |
| MaeII | ACGT | 4 cut(s) | 654, 833, 938, 1579 |
| MaeIII | GTNAC | 7 cut(s) | 499, 610, 672, 715, 829, 1118, 1587 |
| MalI | GATC | 4 cut(s) | 69, 540, 1013, 1554 |
| MboI | GATC | 4 cut(s) | 67, 538, 1011, 1552 |
| MboII | GAAGA | 7 cut(s) | 31, 38, 298, 373, 463, 1043, 1254 |
| MfeI | CAATTG | 1 cut(s) | 1416 |
| MflI | RGATCY | 1 cut(s) | 1552 |
| MhlI | GDGCHC | 1 cut(s) | 120 |
| MlyI | GAGTC | 3 cut(s) | 427, 919, 1595 |
| MmeI | TCCRAC | 1 cut(s) | 845 |
| MroXI | GAANNNNTTC | 1 cut(s) | 200 |
| MseI | TTAA | 9 cut(s) | 147, 321, 519, 981, 1155, 1365, 1451, 1562, 1575 |
| MslI | CAYNNNNRTG | 2 cut(s) | 797, 1080 |
| MspI | CCGG | 1 cut(s) | 1230 |
| MspR9I | CCNGG | 1 cut(s) | 1231 |
| MunI | CAATTG | 1 cut(s) | 1416 |
| MvnI | CGCG | 2 cut(s) | 271, 1068 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 268, 277, 1001, 1034, 1335 |
| NciI | CCSGG | 1 cut(s) | 1231 |
| NdeII | GATC | 4 cut(s) | 67, 538, 1011, 1552 |
| NlaIII | CATG | 1 cut(s) | 1256 |
| NlaIV | GGNNCC | 1 cut(s) | 589 |
| NmuCI | GTSAC | 2 cut(s) | 499, 1587 |
| NspI | RCATGY | 1 cut(s) | 1256 |
| PceI | AGGCCT | 4 cut(s) | 143, 554, 706, 1338 |
| PdmI | GAANNNNTTC | 1 cut(s) | 200 |
| PfeI | GAWTC | 5 cut(s) | 15, 847, 956, 1241, 1529 |
| PkrI | GCNGC | 3 cut(s) | 7, 757, 1070 |
| PleI | GAGTC | 3 cut(s) | 427, 918, 1594 |
| PpsI | GAGTC | 3 cut(s) | 427, 918, 1594 |
| Ppu21I | YACGTR | 2 cut(s) | 834, 939 |
| PpuMI | RGGWCCY | 1 cut(s) | 587 |
| Psp1406I | AACGTT | 1 cut(s) | 654 |
| Psp5II | RGGWCCY | 1 cut(s) | 587 |
| PspN4I | GGNNCC | 1 cut(s) | 589 |
| PspPI | GGNCC | 1 cut(s) | 587 |
| PspPPI | RGGWCCY | 1 cut(s) | 587 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 639, 671 |
| PsuI | RGATCY | 1 cut(s) | 1552 |
| RsaI | GTAC | 4 cut(s) | 395, 836, 941, 1065 |
| RsaNI | GTAC | 4 cut(s) | 394, 835, 940, 1064 |
| RseI | CAYNNNNRTG | 2 cut(s) | 797, 1080 |
| SaqAI | TTAA | 9 cut(s) | 147, 321, 519, 981, 1155, 1365, 1451, 1562, 1575 |
| SatI | GCNGC | 3 cut(s) | 6, 756, 1069 |
| Sau3AI | GATC | 4 cut(s) | 67, 538, 1011, 1552 |
| Sau96I | GGNCC | 1 cut(s) | 587 |
| SchI | GAGTC | 3 cut(s) | 427, 919, 1595 |
| ScrFI | CCNGG | 1 cut(s) | 1231 |
| SduI | GDGCHC | 1 cut(s) | 120 |
| SfaNI | GCATC | 1 cut(s) | 226 |
| SfcI | CTRYAG | 1 cut(s) | 421 |
| SinI | GGWCC | 1 cut(s) | 587 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 797, 1080 |
| SnaBI | TACGTA | 1 cut(s) | 834 |
| SseBI | AGGCCT | 4 cut(s) | 143, 554, 706, 1338 |
| SsiI | CCGC | 3 cut(s) | 608, 1068, 1297 |
| SspI | AATATT | 1 cut(s) | 406 |
| SspMI | CTAG | 2 cut(s) | 89, 1184 |
| StuI | AGGCCT | 4 cut(s) | 143, 554, 706, 1338 |
| StyD4I | CCNGG | 1 cut(s) | 1229 |
| StyI | CCWWGG | 1 cut(s) | 1423 |
| TaaI | ACNGT | 4 cut(s) | 333, 596, 1549, 1593 |
| TaiI | ACGT | 4 cut(s) | 657, 836, 941, 1582 |
| TaqI | TCGA | 6 cut(s) | 66, 156, 204, 436, 579, 1014 |
| TaqII | GACCGA | 1 cut(s) | 563 |
| TatI | WGTACW | 1 cut(s) | 393 |
| TauI | GCSGC | 1 cut(s) | 1071 |
| TfiI | GAWTC | 5 cut(s) | 15, 847, 956, 1241, 1529 |
| Tru1I | TTAA | 9 cut(s) | 147, 321, 519, 981, 1155, 1365, 1451, 1562, 1575 |
| Tru9I | TTAA | 9 cut(s) | 147, 321, 519, 981, 1155, 1365, 1451, 1562, 1575 |
| TscAI | CASTG | 6 cut(s) | 120, 599, 799, 1002, 1149, 1596 |
| TseFI | GTSAC | 2 cut(s) | 499, 1587 |
| TseI | GCWGC | 2 cut(s) | 5, 755 |
| Tsp45I | GTSAC | 2 cut(s) | 499, 1587 |
| TspDTI | ATGAA | 6 cut(s) | 49, 222, 607, 1303, 1371, 1521 |
| TspGWI | ACGGA | 1 cut(s) | 1475 |
| TspRI | CASTG | 6 cut(s) | 120, 599, 799, 1002, 1149, 1596 |
| VpaK11BI | GGWCC | 1 cut(s) | 587 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 629 |
| XapI | RAATTY | 4 cut(s) | 210, 872, 1042, 1131 |
| XbaI | TCTAGA | 1 cut(s) | 88 |
| XceI | RCATGY | 1 cut(s) | 1256 |
| XmiI | GTMKAC | 2 cut(s) | 559, 933 |
| XmnI | GAANNNNTTC | 1 cut(s) | 200 |
| XspI | CTAG | 2 cut(s) | 89, 1184 |