Pentatricopeptide repeat-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| ArgoN | PF16486 | 103 - 245 | 9.7e-37 | N-terminal domain of argonaute |
| ArgoL1 | PF08699 | 256 - 304 | 1.8e-18 | Argonaute linker 1 domain |
| PAZ | PF02170 | 329 - 440 | 4.2e-25 | PAZ domain |
| ArgoL2 | PF16488 | 450 - 500 | 2.8e-10 | Argonaute linker 2 domain |
| ArgoMid | PF16487 | 511 - 588 | 3.6e-10 | Mid domain of argonaute |
| Piwi | PF02171 | 600 - 919 | 2.1e-108 | Piwi domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 1418, 1998 |
| AarI | CACCTGC | 1 cut(s) | 2719 |
| Acc36I | ACCTGC | 2 cut(s) | 334, 2719 |
| AccB1I | GGYRCC | 1 cut(s) | 104 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 563 |
| AccI | GTMKAC | 1 cut(s) | 853 |
| AccII | CGCG | 1 cut(s) | 12 |
| AccIII | TCCGGA | 2 cut(s) | 5, 2821 |
| AclI | AACGTT | 1 cut(s) | 2408 |
| AclWI | GGATC | 2 cut(s) | 403, 618 |
| AcoI | YGGCCR | 4 cut(s) | 16, 231, 1202, 2120 |
| AcsI | RAATTY | 4 cut(s) | 312, 471, 1427, 2540 |
| AcuI | CTGAAG | 1 cut(s) | 1775 |
| AcyI | GRCGYC | 3 cut(s) | 105, 224, 254 |
| AfaI | GTAC | 9 cut(s) | 298, 758, 830, 1175, 1713, 1746, 2421, 2506, 2675 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 59, 293, 343, 418, 563, 1017, 1538, 1539, 2069 |
| AflII | CTTAAG | 1 cut(s) | 1943 |
| AgsI | TTSAA | 7 cut(s) | 317, 695, 914, 1015, 1214, 1230, 2498 |
| AjnI | CCWGG | 4 cut(s) | 336, 1726, 2500, 2574 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1689, 1721 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 2572, 2604 |
| Alw21I | GWGCWC | 3 cut(s) | 2687, 2746, 2803 |
| Alw26I | GTCTC | 5 cut(s) | 212, 351, 446, 1392, 1884 |
| Alw44I | GTGCAC | 2 cut(s) | 2683, 2799 |
| AlwI | GGATC | 2 cut(s) | 403, 618 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 2507 |
| Ama87I | CYCGRG | 3 cut(s) | 132, 1344, 1470 |
| Aor13HI | TCCGGA | 2 cut(s) | 5, 2821 |
| ApaLI | GTGCAC | 2 cut(s) | 2683, 2799 |
| ApeKI | GCWGC | 8 cut(s) | 239, 572, 575, 578, 681, 2066, 2096, 2158 |
| ApoI | RAATTY | 4 cut(s) | 312, 471, 1427, 2540 |
| AspLEI | GCGC | 3 cut(s) | 45, 107, 2158 |
| AspS9I | GGNCC | 3 cut(s) | 119, 512, 797 |
| AsuC2I | CCSGG | 1 cut(s) | 117 |
| AsuHPI | GGTGA | 7 cut(s) | 280, 433, 827, 937, 1012, 2156, 2774 |
| AsuII | TTCGAA | 1 cut(s) | 599 |
| AvaI | CYCGRG | 3 cut(s) | 132, 1344, 1470 |
| BaeGI | GKGCMC | 2 cut(s) | 2687, 2803 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 2496, 2529 |
| BalI | TGGCCA | 2 cut(s) | 1204, 2122 |
| BanI | GGYRCC | 1 cut(s) | 104 |
| BanII | GRGCYC | 2 cut(s) | 1896, 2818 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 485, 517 |
| BbsI | GAAGAC | 1 cut(s) | 579 |
| Bbv12I | GWGCWC | 3 cut(s) | 2687, 2746, 2803 |
| BbvI | GCAGC | 8 cut(s) | 226, 559, 565, 587, 693, 2078, 2108, 2170 |
| BceAI | ACGGC | 6 cut(s) | 76, 218, 246, 2266, 2571, 2762 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 1145, 1179, 2133, 2167, 2420, 2454 |
| BciT130I | CCWGG | 4 cut(s) | 338, 1728, 2502, 2576 |
| BciVI | GTATCC | 1 cut(s) | 1630 |
| BclI | TGATCA | 2 cut(s) | 1816, 2455 |
| BcnI | CCSGG | 1 cut(s) | 117 |
| BcoDI | GTCTC | 5 cut(s) | 212, 351, 446, 1392, 1884 |
| BfaI | CTAG | 1 cut(s) | 812 |
| BfmI | CTRYAG | 8 cut(s) | 573, 579, 1098, 2137, 2260, 2299, 2535, 2700 |
| BfoI | RGCGCY | 2 cut(s) | 46, 108 |
| BfrI | CTTAAG | 1 cut(s) | 1943 |
| BfuAI | ACCTGC | 2 cut(s) | 334, 2719 |
| BfuI | GTATCC | 1 cut(s) | 1630 |
| BglII | AGATCT | 2 cut(s) | 902, 2185 |
| BmcAI | AGTACT | 1 cut(s) | 830 |
| Bme1390I | CCNGG | 5 cut(s) | 117, 338, 1728, 2502, 2576 |
| BmeT110I | CYCGRG | 3 cut(s) | 132, 1344, 1470 |
| BmgT120I | GGNCC | 3 cut(s) | 119, 512, 797 |
| BmiI | GGNNCC | 3 cut(s) | 106, 120, 171 |
| BmrFI | CCNGG | 5 cut(s) | 117, 338, 1728, 2502, 2576 |
| BmsI | GCATC | 6 cut(s) | 407, 1978, 1995, 2170, 2344, 2440 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1509 |
| BpiI | GAAGAC | 1 cut(s) | 579 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 1244, 1276, 2750, 2782 |
| BpmI | CTGGAG | 3 cut(s) | 236, 853, 1597 |
| Bpu14I | TTCGAA | 1 cut(s) | 599 |
| BpuEI | CTTGAG | 1 cut(s) | 687 |
| BpuMI | CCSGG | 1 cut(s) | 117 |
| BsaAI | YACGTR | 1 cut(s) | 2673 |
| BsaHI | GRCGYC | 3 cut(s) | 105, 224, 254 |
| BsaI | GGTCTC | 1 cut(s) | 351 |
| BsaJI | CCNNGG | 5 cut(s) | 19, 116, 531, 1343, 2575 |
| BsaWI | WCCGGW | 3 cut(s) | 5, 172, 2821 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 191, 221, 2037, 2067, 2793, 2823 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 59, 293, 343, 418, 563, 1017, 1538, 1539, 2069 |
| Bse118I | RCCGGY | 3 cut(s) | 24, 148, 250 |
| Bse1I | ACTGG | 7 cut(s) | 219, 438, 836, 1052, 1709, 2323, 2794 |
| Bse3DI | GCAATG | 3 cut(s) | 515, 1228, 1487 |
| BseAI | TCCGGA | 2 cut(s) | 5, 2821 |
| BseBI | CCWGG | 4 cut(s) | 338, 1728, 2502, 2576 |
| BseDI | CCNNGG | 5 cut(s) | 19, 116, 531, 1343, 2575 |
| BseGI | GGATG | 6 cut(s) | 1666, 1686, 1723, 2059, 2359, 2768 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 59, 293, 343, 418, 563, 1017, 1538, 1539, 2069 |
| BseMI | GCAATG | 3 cut(s) | 515, 1228, 1487 |
| BseMII | CTCAG | 6 cut(s) | 176, 780, 921, 1762, 1895, 2199 |
| BseNI | ACTGG | 7 cut(s) | 219, 438, 836, 1052, 1709, 2323, 2794 |
| BseSI | GKGCMC | 2 cut(s) | 2687, 2803 |
| BseX3I | CGGCCG | 2 cut(s) | 16, 231 |
| BseXI | GCAGC | 8 cut(s) | 226, 559, 565, 587, 693, 2078, 2108, 2170 |
| BsgI | GTGCAG | 2 cut(s) | 362, 700 |
| Bsh1236I | CGCG | 1 cut(s) | 12 |
| Bsh1285I | CGRYCG | 5 cut(s) | 19, 234, 303, 2023, 2693 |
| BshNI | GGYRCC | 1 cut(s) | 104 |
| BsiEI | CGRYCG | 5 cut(s) | 19, 234, 303, 2023, 2693 |
| BsiHKAI | GWGCWC | 3 cut(s) | 2687, 2746, 2803 |
| BsiHKCI | CYCGRG | 3 cut(s) | 132, 1344, 1470 |
| BsiWI | CGTACG | 1 cut(s) | 2673 |
| BslFI | GGGAC | 3 cut(s) | 1058, 1125, 1361 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 59, 293, 343, 418, 563, 1017, 1538, 1539, 2069 |
| BsmAI | GTCTC | 5 cut(s) | 212, 351, 446, 1392, 1884 |
| BsmBI | CGTCTC | 3 cut(s) | 212, 446, 1392 |
| BsmFI | GGGAC | 3 cut(s) | 1058, 1125, 1361 |
| Bso31I | GGTCTC | 1 cut(s) | 351 |
| BsoBI | CYCGRG | 3 cut(s) | 132, 1344, 1470 |
| Bsp119I | TTCGAA | 1 cut(s) | 599 |
| Bsp1286I | GDGCHC | 5 cut(s) | 1896, 2687, 2746, 2803, 2818 |
| Bsp13I | TCCGGA | 2 cut(s) | 5, 2821 |
| BspCNI | CTCAG | 6 cut(s) | 177, 781, 922, 1761, 1894, 2200 |
| BspEI | TCCGGA | 2 cut(s) | 5, 2821 |
| BspFNI | CGCG | 1 cut(s) | 12 |
| BspLI | GGNNCC | 3 cut(s) | 106, 120, 171 |
| BspMAI | CTGCAG | 3 cut(s) | 577, 583, 1102 |
| BspMI | ACCTGC | 2 cut(s) | 334, 2719 |
| BspPI | GGATC | 2 cut(s) | 403, 618 |
| BspQI | GCTCTTC | 1 cut(s) | 488 |
| BspT104I | TTCGAA | 1 cut(s) | 599 |
| BspT107I | GGYRCC | 1 cut(s) | 104 |
| BspTI | CTTAAG | 1 cut(s) | 1943 |
| BspTNI | GGTCTC | 1 cut(s) | 351 |
| BsrDI | GCAATG | 3 cut(s) | 515, 1228, 1487 |
| BsrFI | RCCGGY | 3 cut(s) | 24, 148, 250 |
| BsrI | ACTGG | 7 cut(s) | 219, 438, 836, 1052, 1709, 2323, 2794 |
| BssAI | RCCGGY | 3 cut(s) | 24, 148, 250 |
| BssECI | CCNNGG | 5 cut(s) | 19, 116, 531, 1343, 2575 |
| BssNI | GRCGYC | 3 cut(s) | 105, 224, 254 |
| BssT1I | CCWWGG | 1 cut(s) | 531 |
| Bst2UI | CCWGG | 4 cut(s) | 338, 1728, 2502, 2576 |
| Bst6I | CTCTTC | 1 cut(s) | 488 |
| BstACI | GRCGYC | 3 cut(s) | 105, 224, 254 |
| BstAFI | CTTAAG | 1 cut(s) | 1943 |
| BstBAI | YACGTR | 1 cut(s) | 2673 |
| BstBI | TTCGAA | 1 cut(s) | 599 |
| BstC8I | GCNNGC | 7 cut(s) | 26, 41, 252, 686, 1206, 1219, 2027 |
| BstDEI | CTNAG | 8 cut(s) | 185, 734, 789, 930, 1748, 1881, 1888, 2208 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 341 |
| BstF5I | GGATG | 6 cut(s) | 1666, 1686, 1723, 2059, 2359, 2768 |
| BstFNI | CGCG | 1 cut(s) | 12 |
| BstH2I | RGCGCY | 2 cut(s) | 46, 108 |
| BstHHI | GCGC | 3 cut(s) | 45, 107, 2158 |
| BstMAI | GTCTC | 5 cut(s) | 212, 351, 446, 1392, 1884 |
| BstMCI | CGRYCG | 5 cut(s) | 19, 234, 303, 2023, 2693 |
| BstNI | CCWGG | 4 cut(s) | 338, 1728, 2502, 2576 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1509 |
| BstSCI | CCNGG | 5 cut(s) | 115, 336, 1726, 2500, 2574 |
| BstSFI | CTRYAG | 8 cut(s) | 573, 579, 1098, 2137, 2260, 2299, 2535, 2700 |
| BstSLI | GKGCMC | 2 cut(s) | 2687, 2803 |
| BstSNI | TACGTA | 1 cut(s) | 2673 |
| BstUI | CGCG | 1 cut(s) | 12 |
| BstV1I | GCAGC | 8 cut(s) | 226, 559, 565, 587, 693, 2078, 2108, 2170 |
| BstV2I | GAAGAC | 1 cut(s) | 579 |
| BstX2I | RGATCY | 3 cut(s) | 408, 902, 2185 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1508 |
| BstYI | RGATCY | 3 cut(s) | 408, 902, 2185 |
| BstZI | CGGCCG | 2 cut(s) | 16, 231 |
| BsuI | GTATCC | 1 cut(s) | 1630 |
| BtsCI | GGATG | 6 cut(s) | 1666, 1686, 1723, 2059, 2359, 2768 |
| BtsI | GCAGTG | 2 cut(s) | 1550, 2628 |
| BtsIMutI | CAGTG | 9 cut(s) | 212, 759, 957, 1513, 1550, 1889, 1974, 2320, 2628 |
| BveI | ACCTGC | 2 cut(s) | 334, 2719 |
| Cac8I | GCNNGC | 7 cut(s) | 26, 41, 252, 686, 1206, 1219, 2027 |
| CaiI | CAGNNNCTG | 1 cut(s) | 2507 |
| CfoI | GCGC | 3 cut(s) | 45, 107, 2158 |
| Cfr10I | RCCGGY | 3 cut(s) | 24, 148, 250 |
| Cfr13I | GGNCC | 3 cut(s) | 119, 512, 797 |
| CseI | GACGC | 4 cut(s) | 18, 232, 243, 463 |
| CsiI | ACCWGGT | 1 cut(s) | 2500 |
| Csp6I | GTAC | 9 cut(s) | 297, 757, 829, 1174, 1712, 1745, 2420, 2505, 2674 |
| CviAII | CATG | 6 cut(s) | 490, 1502, 1552, 2225, 2564, 2603 |
| CviQI | GTAC | 9 cut(s) | 297, 757, 829, 1174, 1712, 1745, 2420, 2505, 2674 |
| DdeI | CTNAG | 8 cut(s) | 185, 734, 789, 930, 1748, 1881, 1888, 2208 |
| DinI | GGCGCC | 1 cut(s) | 106 |
| DraI | TTTAAA | 1 cut(s) | 1983 |
| EaeI | YGGCCR | 4 cut(s) | 16, 231, 1202, 2120 |
| EagI | CGGCCG | 2 cut(s) | 16, 231 |
| Eam1104I | CTCTTC | 1 cut(s) | 488 |
| EarI | CTCTTC | 1 cut(s) | 488 |
| EciI | GGCGGA | 2 cut(s) | 78, 105 |
| EclXI | CGGCCG | 2 cut(s) | 16, 231 |
| Eco105I | TACGTA | 1 cut(s) | 2673 |
| Eco130I | CCWWGG | 1 cut(s) | 531 |
| Eco24I | GRGCYC | 2 cut(s) | 1896, 2818 |
| Eco31I | GGTCTC | 1 cut(s) | 351 |
| Eco52I | CGGCCG | 2 cut(s) | 16, 231 |
| Eco57I | CTGAAG | 1 cut(s) | 1775 |
| Eco88I | CYCGRG | 3 cut(s) | 132, 1344, 1470 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 341 |
| EcoRI | GAATTC | 1 cut(s) | 471 |
| EcoRII | CCWGG | 4 cut(s) | 336, 1726, 2500, 2574 |
| EcoT14I | CCWWGG | 1 cut(s) | 531 |
| EcoT38I | GRGCYC | 2 cut(s) | 1896, 2818 |
| EgeI | GGCGCC | 1 cut(s) | 106 |
| EheI | GGCGCC | 1 cut(s) | 106 |
| ErhI | CCWWGG | 1 cut(s) | 531 |
| Esp3I | CGTCTC | 3 cut(s) | 212, 446, 1392 |
| FaeI | CATG | 6 cut(s) | 493, 1505, 1555, 2228, 2567, 2606 |
| FalI | AAGNNNNNCTT | 8 cut(s) | 995, 1027, 1111, 1143, 1398, 1430, 2353, 2385 |
| FaqI | GGGAC | 3 cut(s) | 1058, 1125, 1361 |
| FatI | CATG | 6 cut(s) | 489, 1501, 1551, 2224, 2563, 2602 |
| FauI | CCCGC | 2 cut(s) | 32, 1011 |
| FbaI | TGATCA | 2 cut(s) | 1816, 2455 |
| FblI | GTMKAC | 1 cut(s) | 853 |
| FokI | GGATG | 6 cut(s) | 1673, 1693, 1710, 2046, 2366, 2755 |
| FriOI | GRGCYC | 2 cut(s) | 1896, 2818 |
| FspBI | CTAG | 1 cut(s) | 812 |
| GlaI | GCGC | 3 cut(s) | 44, 106, 2157 |
| GsuI | CTGGAG | 3 cut(s) | 236, 853, 1597 |
| HaeII | RGCGCY | 2 cut(s) | 46, 108 |
| HgaI | GACGC | 4 cut(s) | 18, 232, 243, 463 |
| HhaI | GCGC | 3 cut(s) | 45, 107, 2158 |
| Hin1I | GRCGYC | 3 cut(s) | 105, 224, 254 |
| Hin1II | CATG | 6 cut(s) | 493, 1505, 1555, 2228, 2567, 2606 |
| Hin6I | GCGC | 3 cut(s) | 43, 105, 2156 |
| HinP1I | GCGC | 3 cut(s) | 43, 105, 2156 |
| HincII | GTYRAC | 3 cut(s) | 210, 1337, 2515 |
| HindII | GTYRAC | 3 cut(s) | 210, 1337, 2515 |
| HinfI | GANTC | 7 cut(s) | 850, 1226, 1409, 1826, 2571, 2625, 2765 |
| HphI | GGTGA | 7 cut(s) | 280, 433, 827, 937, 1012, 2156, 2774 |
| Hpy188I | TCNGA | 8 cut(s) | 323, 451, 751, 1776, 2209, 2475, 2773, 2813 |
| Hpy99I | CGWCG | 6 cut(s) | 226, 232, 259, 262, 2108, 2287 |
| HpyAV | CCTTC | 9 cut(s) | 256, 812, 1951, 2206, 2266, 2312, 2358, 2381, 2828 |
| HpyCH4IV | ACGT | 4 cut(s) | 375, 1339, 2408, 2672 |
| HpyF3I | CTNAG | 8 cut(s) | 185, 734, 789, 930, 1748, 1881, 1888, 2208 |
| HpySE526I | ACGT | 4 cut(s) | 375, 1339, 2408, 2672 |
| Hsp92I | GRCGYC | 3 cut(s) | 105, 224, 254 |
| Hsp92II | CATG | 6 cut(s) | 493, 1505, 1555, 2228, 2567, 2606 |
| HspAI | GCGC | 3 cut(s) | 43, 105, 2156 |
| KasI | GGCGCC | 1 cut(s) | 104 |
| Kpn2I | TCCGGA | 2 cut(s) | 5, 2821 |
| KroI | GCCGGC | 2 cut(s) | 24, 250 |
| KroNI | GCCGGC | 2 cut(s) | 26, 252 |
| Ksp22I | TGATCA | 2 cut(s) | 1816, 2455 |
| LguI | GCTCTTC | 1 cut(s) | 488 |
| LmnI | GCTCC | 5 cut(s) | 118, 175, 199, 1252, 2045 |
| Lsp1109I | GCAGC | 8 cut(s) | 226, 559, 565, 587, 693, 2078, 2108, 2170 |
| LweI | GCATC | 6 cut(s) | 407, 1978, 1995, 2170, 2344, 2440 |
| MabI | ACCWGGT | 1 cut(s) | 2500 |
| MaeI | CTAG | 1 cut(s) | 812 |
| MaeII | ACGT | 4 cut(s) | 375, 1339, 2408, 2672 |
| MaeIII | GTNAC | 8 cut(s) | 376, 925, 1309, 2014, 2053, 2128, 2404, 2762 |
| MboII | GAAGA | 9 cut(s) | 505, 579, 585, 588, 1015, 1073, 1145, 1852, 2014 |
| MfeI | CAATTG | 2 cut(s) | 1263, 2145 |
| MflI | RGATCY | 3 cut(s) | 408, 902, 2185 |
| MhlI | GDGCHC | 5 cut(s) | 1896, 2687, 2746, 2803, 2818 |
| MlsI | TGGCCA | 2 cut(s) | 1204, 2122 |
| MluNI | TGGCCA | 2 cut(s) | 1204, 2122 |
| Mly113I | GGCGCC | 1 cut(s) | 105 |
| MlyI | GAGTC | 2 cut(s) | 859, 2759 |
| Mox20I | TGGCCA | 2 cut(s) | 1204, 2122 |
| MreI | CGCCGGCG | 1 cut(s) | 250 |
| MroI | TCCGGA | 2 cut(s) | 5, 2821 |
| MroNI | GCCGGC | 2 cut(s) | 24, 250 |
| MscI | TGGCCA | 2 cut(s) | 1204, 2122 |
| MslI | CAYNNNNRTG | 6 cut(s) | 369, 923, 1506, 2166, 2169, 2601 |
| Msp20I | TGGCCA | 2 cut(s) | 1204, 2122 |
| MspA1I | CMGCKG | 2 cut(s) | 87, 578 |
| MspCI | CTTAAG | 1 cut(s) | 1943 |
| MspR9I | CCNGG | 5 cut(s) | 117, 338, 1728, 2502, 2576 |
| MunI | CAATTG | 2 cut(s) | 1263, 2145 |
| MvaI | CCWGG | 4 cut(s) | 338, 1728, 2502, 2576 |
| MvnI | CGCG | 1 cut(s) | 12 |
| NaeI | GCCGGC | 2 cut(s) | 26, 252 |
| NarI | GGCGCC | 1 cut(s) | 105 |
| NciI | CCSGG | 1 cut(s) | 117 |
| NgoMIV | GCCGGC | 2 cut(s) | 24, 250 |
| NlaIII | CATG | 6 cut(s) | 493, 1505, 1555, 2228, 2567, 2606 |
| NlaIV | GGNNCC | 3 cut(s) | 106, 120, 171 |
| NmeAIII | GCCGAG | 2 cut(s) | 44, 146 |
| NmuCI | GTSAC | 5 cut(s) | 925, 1309, 2014, 2128, 2762 |
| NspV | TTCGAA | 1 cut(s) | 599 |
| PaeR7I | CTCGAG | 2 cut(s) | 132, 1470 |
| PaqCI | CACCTGC | 1 cut(s) | 2719 |
| PciSI | GCTCTTC | 1 cut(s) | 488 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 16 |
| PdiI | GCCGGC | 2 cut(s) | 26, 252 |
| PfeI | GAWTC | 5 cut(s) | 1226, 1409, 1826, 2571, 2625 |
| Pfl23II | CGTACG | 1 cut(s) | 2673 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 563 |
| PfoI | TCCNGGA | 1 cut(s) | 1726 |
| Ple19I | CGATCG | 2 cut(s) | 2023, 2693 |
| PleI | GAGTC | 2 cut(s) | 858, 2759 |
| PluTI | GGCGCC | 1 cut(s) | 108 |
| PpsI | GAGTC | 2 cut(s) | 858, 2759 |
| Ppu21I | YACGTR | 1 cut(s) | 2673 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1509 |
| PsiI | TTATAA | 2 cut(s) | 1418, 1998 |
| Psp1406I | AACGTT | 1 cut(s) | 2408 |
| Psp6I | CCWGG | 4 cut(s) | 336, 1726, 2500, 2574 |
| PspGI | CCWGG | 4 cut(s) | 336, 1726, 2500, 2574 |
| PspLI | CGTACG | 1 cut(s) | 2673 |
| PspN4I | GGNNCC | 3 cut(s) | 106, 120, 171 |
| PspPI | GGNCC | 3 cut(s) | 119, 512, 797 |
| PspXI | VCTCGAGB | 2 cut(s) | 132, 1470 |
| PstI | CTGCAG | 3 cut(s) | 577, 583, 1102 |
| PstNI | CAGNNNCTG | 1 cut(s) | 2507 |
| PsuI | RGATCY | 3 cut(s) | 408, 902, 2185 |
| PvuI | CGATCG | 2 cut(s) | 2023, 2693 |
| PvuII | CAGCTG | 1 cut(s) | 578 |
| RsaI | GTAC | 9 cut(s) | 298, 758, 830, 1175, 1713, 1746, 2421, 2506, 2675 |
| RsaNI | GTAC | 9 cut(s) | 297, 757, 829, 1174, 1712, 1745, 2420, 2505, 2674 |
| RseI | CAYNNNNRTG | 6 cut(s) | 369, 923, 1506, 2166, 2169, 2601 |
| SapI | GCTCTTC | 1 cut(s) | 488 |
| Sau96I | GGNCC | 3 cut(s) | 119, 512, 797 |
| ScaI | AGTACT | 1 cut(s) | 830 |
| SchI | GAGTC | 2 cut(s) | 859, 2759 |
| ScrFI | CCNGG | 5 cut(s) | 117, 338, 1728, 2502, 2576 |
| SduI | GDGCHC | 5 cut(s) | 1896, 2687, 2746, 2803, 2818 |
| SexAI | ACCWGGT | 1 cut(s) | 2500 |
| SfaNI | GCATC | 6 cut(s) | 407, 1978, 1995, 2170, 2344, 2440 |
| SfcI | CTRYAG | 8 cut(s) | 573, 579, 1098, 2137, 2260, 2299, 2535, 2700 |
| SfoI | GGCGCC | 1 cut(s) | 106 |
| Sfr274I | CTCGAG | 2 cut(s) | 132, 1470 |
| SfuI | TTCGAA | 1 cut(s) | 599 |
| SgrAI | CRCCGGYG | 2 cut(s) | 148, 250 |
| SlaI | CTCGAG | 2 cut(s) | 132, 1470 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 369, 923, 1506, 2166, 2169, 2601 |
| SmlI | CTYRAG | 4 cut(s) | 132, 702, 1470, 1943 |
| SmoI | CTYRAG | 4 cut(s) | 132, 702, 1470, 1943 |
| SnaBI | TACGTA | 1 cut(s) | 2673 |
| SspDI | GGCGCC | 1 cut(s) | 104 |
| SspI | AATATT | 4 cut(s) | 886, 1160, 1925, 2494 |
| SspMI | CTAG | 1 cut(s) | 812 |
| StyD4I | CCNGG | 5 cut(s) | 115, 336, 1726, 2500, 2574 |
| StyI | CCWWGG | 1 cut(s) | 531 |
| TaiI | ACGT | 4 cut(s) | 378, 1342, 2411, 2675 |
| TaqI | TCGA | 7 cut(s) | 133, 260, 599, 613, 1471, 2285, 2740 |
| TaqII | GACCGA | 1 cut(s) | 2033 |
| TatI | WGTACW | 4 cut(s) | 756, 828, 1173, 1711 |
| TauI | GCSGC | 6 cut(s) | 15, 18, 72, 90, 155, 250 |
| TfiI | GAWTC | 5 cut(s) | 1226, 1409, 1826, 2571, 2625 |
| TscAI | CASTG | 9 cut(s) | 219, 766, 964, 1513, 1550, 1889, 1981, 2320, 2635 |
| TseFI | GTSAC | 5 cut(s) | 925, 1309, 2014, 2128, 2762 |
| TseI | GCWGC | 8 cut(s) | 239, 572, 575, 578, 681, 2066, 2096, 2158 |
| Tsp45I | GTSAC | 5 cut(s) | 925, 1309, 2014, 2128, 2762 |
| TspDTI | ATGAA | 6 cut(s) | 440, 506, 579, 1818, 2187, 2213 |
| TspGWI | ACGGA | 1 cut(s) | 2129 |
| TspRI | CASTG | 9 cut(s) | 219, 766, 964, 1513, 1550, 1889, 1981, 2320, 2635 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 563 |
| Vha464I | CTTAAG | 1 cut(s) | 1943 |
| VneI | GTGCAC | 2 cut(s) | 2683, 2799 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 341 |
| XapI | RAATTY | 4 cut(s) | 312, 471, 1427, 2540 |
| XhoI | CTCGAG | 2 cut(s) | 132, 1470 |
| XmiI | GTMKAC | 1 cut(s) | 853 |
| XspI | CTAG | 1 cut(s) | 812 |
| ZrmI | AGTACT | 1 cut(s) | 830 |