Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0000021

Physical Location & Seq

Genomic Coordinates Forward (+)

30368992 .. 30371412

Gene Structure 2421 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g35200.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2130 bp

ATGAAGATGATGCTCAAATCACTTGAGGCCTTTTCTTCTTGTTCTCACTTCGGCAGCACAAGAGGTATGCCTTTCCTTCACTCTACTCTTGCTCTCCACAATTTCATGGCCTTGTTTCATTCTCAACCCTCAAACCCAATCAAATCAGTGAGAGATGTGGAGCATACCTTGAATGTGTTCAAGGGAATGCTTCACATGCGTCCTCTGCCTCCTCTTGTCTGCTTCAACCAACTCTTGGCTCAACTTGTCAAATTGGAGCATTATGATGTAGTGATTTCTCTGTTTAAACAAATGGGTCTCATGGGAATCCCTTATGATTCTCCTACTCTCAGCATTCTCGCAAATTGCTACTGTTATTTGAATCAAGCACAAGCCCCCGGGTTGGGTTTATCTGTTTTGCCACACTTCTTCAAACTGGGTCTTCAACCAGATGTCACCACCTTCACTGCTCTAATCAAAGTCTTTCTTCTTCAGACAGCCATAGAACCCAAGACCTCAAACCCAAAAGTCAATTATCTTGACTTTGCCTTGAAGATGTTCCATGAAATGCTTCACTTGCGTCCTCTACCTTCTGTTATCCCTTTCAATCGAATCTTGTCTCAACTTGTCAAACTGAAGCAGTATTCTGCAGTCATATCTTTGAATAGACAAATGCTTCTGCGTCGAATTGTTCCTGATGACTATACTCTTAACATTCTCATCAACTGCTATTGCCATTTGAACCAAATGGGGTTTAGCTTGTCTGTATTGGGAAATTTCTTCAAATTGGGTCTTCAACCAGATGTCATCGCCTTCAACACTCTGATCCATGGTTTTGTTCTCGAGATTCAAGTGGCTGAGGCTGCACTGATTTTCACCAAAATGCTGGAGGGTGGTCATTGTAAGCCCAATGTGGTTACTTTCAATACACTTATAAAGGGCTTTTGCAAGAAAGGGAACAACAGTGCTGCAATTCAATTACTTAGGAACATGGAAGAAAGAGGGTGCGAGCCTGACATTGTTTCGTATAGCACCATCATCGATAGTCTTTGCAAGGAGACACTAGTTGTAGATGCAAGGAAGCACTTCTCAGAGATGATTAGTAGAGGTATTGCTCCCAATGTTGTCACCTACACCTCTTTGATTCACGGTGTTTGCAATTTAGGCCAGTGGCAAGAAGCTACAAGGTTAATGGATCAAATGTTGAGTAAAGGTGTCTTTCCAGATGTCTTCACCTTTAATGTCTTGGTTGATACACTTTGCAAGGAAGGGATGGTCGTCGAAGCCAAAAGTGTGGTTCAAATGATGATTCAAAGAAATATTGAGCCTGTTACAATTACATATAACTCACTTATGGACGGTTACTGTATGCGAGGAGAAATGGACGAGGCAAGACAAGTTTTTGACCTTATGATTAGAAGGGGCTCCATGGTTGATGTTCAGAGTTGTAGCATATTGATTAACGGATATTGCAAGGCTAAAGAGGTCAATAAGGCTAACAAGATTTTTAAGAAAATGCGTCGTATGGAACTAGTTCCAGATACAGTTACTTATACCTCTCTAATTGATGGTTTTTGCAAAGCGGGGAGAATTCAAGAAGCAGTGGAGTTGTTCTCTAAGATGCACGGTTGTGGGCACCTCTCGAATCTTCAAACTTATGCTGTTTTACTTGATGGCCTGTGTAACAATCAGCGACTTACTACGGCAATGGAATTGCTTAAAGAGATGGAAGTCAACAAAATGGTAGTTAATGTTATAGTTTACAATATTGTTATTGAAGGTTTGTGCAAATCTGGAAATATTGAAACTGCCAGAGATCTCTTCTCTCACTTATCAACAAAAGGACTTCAACCTGATGTGAGAACATACAATATCATTATTCATGGACTTTGTCTTCATGGCTTATTGATTGAAGCAGAAAAGTTGCTGAGAGAAATGGGAGGGAGAGGGTGTTCTCCAGATGGTTGGACCTATAACATCATCATCCGAGGGTTGTTGAAAAACAATAAGACATCAAGGGCTATAGGATATATTCAAGAAATGGTCAAATGGGGTTTCTATGCAGATGCATTTACTATGGAATTGATAGTTGGTTTATTGTGTGAGGATGTAGTGGATCCGGCTTTGTCGCCGTTGTTAAAAGATGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0000963 GO:0000966 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004016 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009791 GO:0009845 GO:0009975 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0016829 GO:0016849 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048856 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0090351 GO:0090615 GO:0097159 GO:0140053 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

710

Amino Acids

79.69

Weight (kDa)

8.42

Isoelectric Point (pI)

36.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	190 - 239	5.9e-08	PPR repeat family
PPR_3	PF13812	250 - 308	2.1e-09	Pentatricopeptide repeat domain
PPR_2	PF13041	260 - 310	4.8e-12	PPR repeat family
PPR_1	PF12854	294 - 325	2e-13	PPR repeat
PPR_3	PF13812	295 - 341	1.6e-10	Pentatricopeptide repeat domain
PPR_2	PF13041	296 - 345	1.6e-19	PPR repeat family
PPR	PF01535	299 - 329	2.5e-07	PPR repeat
PPR_1	PF12854	327 - 359	1.2e-09	PPR repeat
PPR_2	PF13041	331 - 380	6.9e-16	PPR repeat family
PPR_long	PF17177	350 - 445	6.2e-06	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	357 - 413	1.3e-10	Pentatricopeptide repeat domain
PPR_1	PF12854	362 - 394	1.7e-10	PPR repeat
PPR_2	PF13041	366 - 415	1.4e-17	PPR repeat family
PPR	PF01535	369 - 399	1.2e-06	PPR repeat
MRP-S27	PF10037	370 - 433	1.1e-07	Mitochondrial 28S ribosomal protein S27
PPR_1	PF12854	397 - 429	2.1e-09	PPR repeat
PPR_2	PF13041	402 - 441	4.1e-06	PPR repeat family
PPR_1	PF12854	432 - 464	6.6e-10	PPR repeat
PPR_2	PF13041	436 - 485	1.3e-14	PPR repeat family
PPR	PF01535	439 - 468	2.3e-09	PPR repeat
PPR_3	PF13812	465 - 516	9.1e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	472 - 520	4.3e-16	PPR repeat family
PPR	PF01535	475 - 502	6e-06	PPR repeat
PPR_1	PF12854	477 - 500	6e-06	PPR repeat
PPR_1	PF12854	503 - 534	8e-15	PPR repeat
PPR_2	PF13041	506 - 555	6.8e-16	PPR repeat family
TPR_24	PF23276	509 - 603	6e-09	Fungal tetratrico peptide repeats
PPR	PF01535	509 - 538	5.3e-10	PPR repeat
PPR_1	PF12854	575 - 602	5.6e-07	PPR repeat
PPR_2	PF13041	577 - 624	3.3e-16	PPR repeat family
PPR_3	PF13812	600 - 656	4.1e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	607 - 639	2.9e-13	PPR repeat
PPR	PF01535	615 - 644	1.9e-07	PPR repeat
PPR_2	PF13041	615 - 660	3.7e-13	PPR repeat family
PPR_2	PF13041	650 - 694	1.8e-07	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000021)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12700 AT1G12700 AT1G12700 AT1G62680 AT1G62680 AT1G62720 AT1G63230 AT1G63630 AT1G63630 AT1G64583 AT1G64583 AT3G16710 AT3G16710 AT5G16640 AT5G41170 AT5G41170
fragaria_vesca	FvH4_2g40320 FvH4_3g13950 FvH4_3g31580 FvH4_3g31590 FvH4_3g33650 FvH4_3g33650 FvH4_3g33650 FvH4_3g35200 FvH4_3g36280 FvH4_3g37111 FvH4_3g37480 FvH4_3g37481 FvH4_3g38020 FvH4_3g38070 FvH4_3g38471 FvH4_3g38472 FvH4_3g38590 FvH4_3g38590 FvH4_3g38590 FvH4_3g38931 FvH4_3g38940 FvH4_3g38940 FvH4_3g39650 FvH4_3g39890 FvH4_3g39940 FvH4_3g40100 FvH4_3g40130 FvH4_3g40940 FvH4_3g40940 FvH4_3g40940 FvH4_3g41340 FvH4_3g41820 FvH4_3g42120 FvH4_3g42121 FvH4_3g42430 FvH4_3g42600 FvH4_3g42700 FvH4_3g43150 FvH4_3g43170 FvH4_3g43330 FvH4_3g44300 FvH4_4g22270 FvH4_4g22280 FvH4_5g09470 FvH4_6g52550
malus_domestica	MD03G1099700.v1.1 MD03G1101000.v1.1 MD03G1103400.v1.1 MD03G1103500.v1.1 MD03G1103700.v1.1 MD03G1105300.v1.1 MD03G1106000.v1.1 MD03G1106100.v1.1 MD03G1107100.v1.1 MD03G1108100.v1.1 MD03G1113100.v1.1 MD03G1113300.v1.1 MD03G1113400.v1.1 MD03G1113500.v1.1 MD03G1113600.v1.1 MD03G1113700.v1.1 MD03G1113800.v1.1 MD04G1015600.v1.1 MD11G1115600.v1.1 MD11G1117400.v1.1 MD11G1117500.v1.1 MD11G1122400.v1.1 MD11G1126400.v1.1 MD11G1126500.v1.1 MD11G1128300.v1.1 MD11G1128400.v1.1 MD11G1128600.v1.1 MD11G1128700.v1.1 MD11G1131800.v1.1 MD11G1131900.v1.1 MD11G1132200.v1.1 MD11G1132300.v1.1 MD11G1135500.v1.1
prunus_persica	Prupe.3G114600_v2.0.a1 Prupe.3G114700_v2.0.a1 Prupe.3G138000_v2.0.a1 Prupe.6G080500_v2.0.a1 Prupe.6G081600_v2.0.a1 Prupe.6G086000_v2.0.a1 Prupe.6G087400_v2.0.a1 Prupe.6G087400_v2.0.a1 Prupe.6G087400_v2.0.a1 Prupe.6G087400_v2.0.a1 Prupe.6G087600_v2.0.a1 Prupe.6G088600_v2.0.a1 Prupe.6G088600_v2.0.a1 Prupe.6G088600_v2.0.a1 Prupe.6G088600_v2.0.a1 Prupe.6G090500_v2.0.a1 Prupe.6G090600_v2.0.a1 Prupe.6G091000_v2.0.a1 Prupe.6G091400_v2.0.a1 Prupe.6G091500_v2.0.a1 Prupe.6G093300_v2.0.a1 Prupe.6G094000_v2.0.a1 Prupe.6G094000_v2.0.a1 Prupe.6G094000_v2.0.a1 Prupe.6G094000_v2.0.a1 Prupe.6G106300_v2.0.a1 Prupe.6G117200_v2.0.a1 Prupe.6G117400_v2.0.a1 Prupe.6G195600_v2.0.a1 Prupe.6G195700_v2.0.a1 Prupe.8G027800_v2.0.a1 Prupe.8G078200_v2.0.a1 Prupe.8G078200_v2.0.a1
pyrus_communis	pycom03g08210 pycom03g08430 pycom03g08450 pycom03g08500 pycom03g08510 pycom03g08640 pycom03g08650 pycom03g08660 pycom04g01160 pycom11g09860 pycom11g10660 pycom11g10700 pycom11g10730 pycom11g10740 pycom11g10890 pycom11g10900 pycom11g10910 pycom11g11040 pycom11g11070 pycom11g11080 pycom11g11090 pycom11g11110 pycom11g11130 pycom11g11140 pycom11g11240
rosa_chinensis	RchiOBHm_Chr2g0133531 RchiOBHm_Chr4g0407671 RchiOBHm_Chr5g0027691 RchiOBHm_Chr5g0027731 RchiOBHm_Chr5g0031841 RchiOBHm_Chr5g0041821 RchiOBHm_Chr5g0061091 RchiOBHm_Chr5g0061131 RchiOBHm_Chr5g0061141 RchiOBHm_Chr5g0062111 RchiOBHm_Chr5g0062121 RchiOBHm_Chr5g0062141 RchiOBHm_Chr5g0062151 RchiOBHm_Chr5g0062161 RchiOBHm_Chr5g0062301 RchiOBHm_Chr5g0062311 RchiOBHm_Chr5g0065171 RchiOBHm_Chr5g0066121 RchiOBHm_Chr5g0066211 RchiOBHm_Chr5g0069221 RchiOBHm_Chr5g0069231 RchiOBHm_Chr5g0069241 RchiOBHm_Chr5g0069251 RchiOBHm_Chr5g0069261 RchiOBHm_Chr5g0069321 RchiOBHm_Chr5g0069341 RchiOBHm_Chr5g0069351 RchiOBHm_Chr5g0069571 RchiOBHm_Chr5g0069581 RchiOBHm_Chr5g0069591 RchiOBHm_Chr5g0069601 RchiOBHm_Chr5g0069651 RchiOBHm_Chr5g0070751 RchiOBHm_Chr5g0071481 RchiOBHm_Chr5g0071931 RchiOBHm_Chr5g0071941 RchiOBHm_Chr5g0072771 RchiOBHm_Chr5g0072831 RchiOBHm_Chr5g0072861 RchiOBHm_Chr5g0072871 RchiOBHm_Chr5g0072901 RchiOBHm_Chr5g0072921 RchiOBHm_Chr5g0073691 RchiOBHm_Chr5g0073711 RchiOBHm_Chr5g0073761 RchiOBHm_Chr5g0074141 RchiOBHm_Chr5g0074181 RchiOBHm_Chr5g0074191 RchiOBHm_Chr5g0074201 RchiOBHm_Chr5g0074231 RchiOBHm_Chr5g0074941 RchiOBHm_Chr5g0074951 RchiOBHm_Chr5g0074961 RchiOBHm_Chr5g0074981 RchiOBHm_Chr5g0075791 RchiOBHm_Chr5g0076111 RchiOBHm_Chr5g0076121 RchiOBHm_Chr5g0076231 RchiOBHm_Chr5g0076241 RchiOBHm_Chr5g0076251 RchiOBHm_Chr5g0076261 RchiOBHm_Chr5g0077441 RchiOBHm_Chr5g0077451 RchiOBHm_Chr5g0077481 RchiOBHm_Chr5g0077511 RchiOBHm_Chr5g0077521 RchiOBHm_Chr5g0077541 RchiOBHm_Chr5g0078461 RchiOBHm_Chr5g0078471 RchiOBHm_Chr5g0078541 RchiOBHm_Chr5g0078551 RchiOBHm_Chr5g0078591 RchiOBHm_Chr5g0078611 RchiOBHm_Chr5g0078801 RchiOBHm_Chr5g0078811 RchiOBHm_Chr7g0226411 RchiOBHm_Chr7g0226421
rosa_laevigata	RLG00000001731 RLG00000001921 RLG00000007507 RLG00000008174 RLG00000008512 RLG00000029432 RLG00000033036 RLG00000033038 RLG00000034096 RLG00000035428 RLG00000035433 RLG00000035434 RLG00000035435 RLG00000035535 RLG00000035536 RLG00000035548 RLG00000035751 RLG00000035754 RLG00000035764 RLG00000035882 RLG00000036044 RLG00000036048 RLG00000036060 RLG00000036061 RLG00000036062 RLG00000036063 RLG00000036070 RLG00000036078 RLG00000036079 RLG00000036080 RLG00000036156 RLG00000036218 RLG00000036219 RLG00000036263 RLG00000036264 RLG00000036331 RLG00000036332 RLG00000036333 RLG00000036338 RLG00000036339 RLG00000036344 RLG00000036345 RLG00000036347 RLG00000036348 RLG00000036349 RLG00000036405 RLG00000036416 RLG00000036457 RLG00000036459 RLG00000036515 RLG00000036516 RLG00000036517 RLG00000036646 RLG00000036697 RLG00000036698 RLG00000036699 RLG00000036702 RLG00000036774 RLG00000036775 RLG00000036786 RLG00000036787
rosa_multiflora	Rmu_co8164206.1_g000001 Rmu_co8198940.1_g000001 Rmu_co8222088.1_g000001 Rmu_co8267751.1_g000001 Rmu_co8339831.1_g000001 Rmu_sc0000573.1_g000056 Rmu_sc0000573.1_g000057 Rmu_sc0000848.1_g000018 Rmu_sc0000861.1_g000039 Rmu_sc0000956.1_g000006 Rmu_sc0000956.1_g000007 Rmu_sc0000987.1_g000004 Rmu_sc0001264.1_g000011 Rmu_sc0001264.1_g000023 Rmu_sc0001366.1_g000024 Rmu_sc0001366.1_g000034 Rmu_sc0001647.1_g000023 Rmu_sc0001647.1_g000025 Rmu_sc0002101.1_g000008 Rmu_sc0002149.1_g000019 Rmu_sc0002296.1_g000015 Rmu_sc0002296.1_g000018 Rmu_sc0002627.1_g000002 Rmu_sc0002658.1_g000002 Rmu_sc0002658.1_g000004 Rmu_sc0002658.1_g000005 Rmu_sc0002658.1_g000008 Rmu_sc0003160.1_g000001 Rmu_sc0003160.1_g000002 Rmu_sc0003160.1_g000027 Rmu_sc0003264.1_g000007 Rmu_sc0003323.1_g000018 Rmu_sc0003542.1_g000014 Rmu_sc0003945.1_g000018 Rmu_sc0004140.1_g000044 Rmu_sc0004140.1_g000045 Rmu_sc0004277.1_g000049 Rmu_sc0004277.1_g000050 Rmu_sc0004277.1_g000051 Rmu_sc0004277.1_g000056 Rmu_sc0004277.1_g000059 Rmu_sc0004277.1_g000064 Rmu_sc0004277.1_g000065 Rmu_sc0004277.1_g000066 Rmu_sc0004277.1_g000071 Rmu_sc0004277.1_g000073 Rmu_sc0004277.1_g000074 Rmu_sc0004277.1_g000080 Rmu_sc0004277.1_g000081 Rmu_sc0004277.1_g000082 Rmu_sc0004501.1_g000006 Rmu_sc0004501.1_g000008 Rmu_sc0004501.1_g000009 Rmu_sc0005069.1_g000010 Rmu_sc0005069.1_g000013 Rmu_sc0005069.1_g000028 Rmu_sc0005255.1_g000008 Rmu_sc0005255.1_g000009 Rmu_sc0005860.1_g000003 Rmu_sc0005961.1_g000008 Rmu_sc0005961.1_g000009 Rmu_sc0006031.1_g000026 Rmu_sc0006952.1_g000035 Rmu_sc0006984.1_g000001 Rmu_sc0007385.1_g000011 Rmu_sc0007385.1_g000018 Rmu_sc0007385.1_g000019 Rmu_sc0007385.1_g000025 Rmu_sc0009248.1_g000008 Rmu_sc0009248.1_g000016 Rmu_sc0009685.1_g000001 Rmu_sc0009685.1_g000008 Rmu_sc0009911.1_g000004 Rmu_sc0009988.1_g000002 Rmu_sc0013565.1_g000003 Rmu_sc0013615.1_g000005 Rmu_sc0015509.1_g000001 Rmu_sc0016676.1_g000001 Rmu_sc0019146.1_g000001 Rmu_sc0023658.1_g000001 Rmu_sc0026875.1_g000001 Rmu_sc0032705.1_g000003 Rmu_sc0036016.1_g000001 Rmu_sc0038790.1_g000001 Rmu_sc0038790.1_g000002 Rmu_sc0038790.1_g000003 Rmu_sc0041070.1_g000001 Rmu_sc0041071.1_g000001
rosa_roxburghii	Rroxscaffold_1G00004470 Rroxscaffold_1G00005600 Rroxscaffold_1G00006630 Rroxscaffold_1G00006640 Rroxscaffold_1G00006680 Rroxscaffold_1G00007240 Rroxscaffold_1G00007270 Rroxscaffold_1G00007600 Rroxscaffold_1G00008320 Rroxscaffold_1G00008330 Rroxscaffold_1G00008390 Rroxscaffold_1G00008400 Rroxscaffold_1G00009250 Rroxscaffold_1G00009640 Rroxscaffold_1G00010430 Rroxscaffold_1G00011430 Rroxscaffold_1G00011580 Rroxscaffold_1G00014270 Rroxscaffold_1G00017730 Rroxscaffold_1G00018390 Rroxscaffold_1G00018400 Rroxscaffold_1G00018410 Rroxscaffold_1G00018550 Rroxscaffold_1G00018580 Rroxscaffold_1G00018590 Rroxscaffold_1G00019560 Rroxscaffold_1G00038700 Rroxscaffold_1G00038710 Rroxscaffold_1G00051880 Rroxscaffold_2G00122050 Rroxscaffold_2G00122060 Rroxscaffold_2G00122070 Rroxscaffold_3G00232850 Rroxscaffold_3G00233170 Rroxscaffold_3G00235240 Rroxscaffold_3G00236030 Rroxscaffold_4G00316710 Rroxscaffold_5G00352260 Rroxscaffold_5G00354420 Rroxscaffold_5G00358050 Rroxscaffold_5G00366080 Rroxscaffold_5G00384640 Rroxscaffold_6G00394470
rosa_rugosa	Rorug02G0236100 Rorug02G0312600 Rorug02G0312600 Rorug04G0081200 Rorug04G0099500 Rorug04G0125700 Rorug04G0192800 Rorug04G0192800 Rorug05G0100300 Rorug05G0195500 Rorug05G0337500 Rorug05G0338000 Rorug05G0338100 Rorug05G0338200 Rorug05G0346000 Rorug05G0346100 Rorug05G0346300 Rorug05G0346400 Rorug05G0347500 Rorug05G0347500 Rorug05G0347700 Rorug05G0347800 Rorug05G0376600 Rorug05G0376600 Rorug05G0379000 Rorug05G0396800 Rorug05G0397000 Rorug05G0397000 Rorug05G0397000 Rorug05G0397200 Rorug05G0398400 Rorug05G0398500 Rorug05G0399000 Rorug05G0412600 Rorug05G0412700 Rorug05G0415700 Rorug05G0419800 Rorug05G0419900 Rorug05G0420000 Rorug05G0420100 Rorug05G0420200 Rorug05G0420500 Rorug05G0429200 Rorug05G0429300 Rorug05G0429400 Rorug05G0429600 Rorug05G0429600 Rorug05G0442200 Rorug05G0446100 Rorug05G0446100 Rorug05G0446100 Rorug05G0446100 Rorug05G0446100 Rorug05G0446200 Rorug05G0446200 Rorug05G0446300 Rorug05G0455000 Rorug05G0455000 Rorug05G0455200 Rorug05G0455400 Rorug05G0461000 Rorug06G0021200 Rorug07G0220800 Rorug07G0237100
rosa_samantha	Rh4DG139600 Rh7AG368500 Rh7DG382400
rosa_wichuraiana	Rw0G005990 Rw0G015820 Rw0G023090 Rw1G011560 Rw5G026460 Rw5G037630 Rw5G040110 Rw5G042370 Rw5G042480 Rw5G042500 Rw5G042520 Rw5G043540 Rw5G043840 Rw5G044270 Rw5G044280 Rw5G044310 Rw5G044320 Rw5G044940 Rw5G045650 Rw5G045660 Rw5G045670 Rw5G046760 Rw5G047270 Rw5G047280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	914
AccB1I	GGYRCC	1 cut(s)	1614
AccB7I	CCANNNNNTGG	1 cut(s)	235
AciI	CCGC	1 cut(s)	1562
AclWI	GGATC	4 cut(s)	799, 1182, 2090, 2103
AcsI	RAATTY	2 cut(s)	754, 1569
AcuI	CTGAAG	2 cut(s)	455, 635
AfiI	CCNNNNNNNGG	3 cut(s)	235, 382, 383
AhlI	ACTAGT	2 cut(s)	1042, 1510
AjuI	GAANNNNNNNTTGG	2 cut(s)	2052, 2084
AleI	CACNNNNGTG	1 cut(s)	1608
AloI	GAACNNNNNNTCC	2 cut(s)	1915, 1947
AluBI	AGCT	2 cut(s)	738, 1160
AluI	AGCT	2 cut(s)	738, 1160
Alw26I	GTCTC	3 cut(s)	302, 603, 1031
AlwI	GGATC	4 cut(s)	799, 1182, 2090, 2103
Ama87I	CYCGRG	2 cut(s)	377, 821
AoxI	GGCC	4 cut(s)	27, 108, 1144, 1654
ApeKI	GCWGC	3 cut(s)	54, 842, 947
ApoI	RAATTY	2 cut(s)	754, 1569
Asp700I	GAANNNNTTC	5 cut(s)	176, 536, 549, 1064, 1512
AspS9I	GGNCC	1 cut(s)	1947
AsuC2I	CCSGG	2 cut(s)	378, 379
AsuHPI	GGTGA	4 cut(s)	427, 847, 1099, 1204
AvaI	CYCGRG	2 cut(s)	377, 821
AvaII	GGWCC	1 cut(s)	1947
BaeGI	GKGCMC	1 cut(s)	1617
BamHI	GGATCC	1 cut(s)	2095
BanI	GGYRCC	1 cut(s)	1614
BanII	GRGCYC	1 cut(s)	1406
BbsI	GAAGAC	4 cut(s)	413, 764, 1201, 1865
BbvCI	CCTCAGC	1 cut(s)	837
BbvI	GCAGC	3 cut(s)	66, 829, 934
BccI	CCATC	6 cut(s)	1022, 1246, 1541, 1646, 1699, 1934
BceAI	ACGGC	2 cut(s)	1698, 2095
BcgI	CGANNNNNNTGC	2 cut(s)	1000, 1034
BcnI	CCSGG	2 cut(s)	378, 379
BcoDI	GTCTC	3 cut(s)	302, 603, 1031
BcuI	ACTAGT	2 cut(s)	1042, 1510
BfaI	CTAG	2 cut(s)	1043, 1511
BfmI	CTRYAG	2 cut(s)	627, 2001
BglII	AGATCT	1 cut(s)	1795
BisI	GCNGC	3 cut(s)	55, 843, 948
BlsI	GCNGC	3 cut(s)	56, 844, 949
Bme1390I	CCNGG	2 cut(s)	378, 379
Bme18I	GGWCC	1 cut(s)	1947
BmeT110I	CYCGRG	2 cut(s)	377, 821
BmgT120I	GGNCC	1 cut(s)	1947
BmiI	GGNNCC	3 cut(s)	1405, 1616, 2097
BmrFI	CCNGG	2 cut(s)	378, 379
BmrI	ACTGGG	1 cut(s)	425
BmsI	GCATC	4 cut(s)	1042, 1590, 2035, 2113
BmuI	ACTGGG	1 cut(s)	425
BpiI	GAAGAC	4 cut(s)	413, 764, 1201, 1865
BplI	GAGNNNNNCTC	2 cut(s)	1577, 1609
BpmI	CTGGAG	2 cut(s)	887, 1920
Bpu10I	CCTNAGC	1 cut(s)	837
BpuEI	CTTGAG	1 cut(s)	44
BpuMI	CCSGG	2 cut(s)	378, 379
Bsa29I	ATCGAT	1 cut(s)	1020
BsaI	GGTCTC	1 cut(s)	302
BsaJI	CCNNGG	5 cut(s)	376, 377, 808, 1407, 1966
BsaXI	ACNNNNNCTCC	2 cut(s)	1915, 1945
Bsc4I	CCNNNNNNNGG	3 cut(s)	235, 382, 383
Bse1I	ACTGG	2 cut(s)	420, 1147
Bse3DI	GCAATG	1 cut(s)	1692
BseCI	ATCGAT	1 cut(s)	1020
BseDI	CCNNGG	5 cut(s)	376, 377, 808, 1407, 1966
BseGI	GGATG	3 cut(s)	1257, 1962, 2092
BseLI	CCNNNNNNNGG	3 cut(s)	235, 382, 383
BseMI	GCAATG	1 cut(s)	1692
BseMII	CTCAG	4 cut(s)	343, 828, 1083, 1898
BseNI	ACTGG	2 cut(s)	420, 1147
BseRI	GAGGAG	2 cut(s)	201, 1368
BseSI	GKGCMC	1 cut(s)	1617
BseXI	GCAGC	3 cut(s)	66, 829, 934
BsgI	GTGCAG	1 cut(s)	828
BshFI	GGCC	4 cut(s)	29, 110, 1146, 1656
BshNI	GGYRCC	1 cut(s)	1614
BshVI	ATCGAT	1 cut(s)	1020
BsiHKCI	CYCGRG	2 cut(s)	377, 821
BsiSI	CCGG	2 cut(s)	378, 2099
BslI	CCNNNNNNNGG	3 cut(s)	235, 382, 383
BsmAI	GTCTC	3 cut(s)	302, 603, 1031
BsmI	GAATGC	2 cut(s)	192, 333
BsnI	GGCC	4 cut(s)	29, 110, 1146, 1656
Bso31I	GGTCTC	1 cut(s)	302
BsoBI	CYCGRG	2 cut(s)	377, 821
Bsp1286I	GDGCHC	2 cut(s)	1406, 1617
Bsp143I	GATC	4 cut(s)	804, 1174, 1795, 2095
Bsp19I	CCATGG	2 cut(s)	808, 1407
BspACI	CCGC	1 cut(s)	1562
BspANI	GGCC	4 cut(s)	29, 110, 1146, 1656
BspCNI	CTCAG	4 cut(s)	342, 829, 1082, 1899
BspDI	ATCGAT	1 cut(s)	1020
BspLI	GGNNCC	3 cut(s)	1405, 1616, 2097
BspMAI	CTGCAG	1 cut(s)	631
BspPI	GGATC	4 cut(s)	799, 1182, 2090, 2103
BspT107I	GGYRCC	1 cut(s)	1614
BspTNI	GGTCTC	1 cut(s)	302
BsrDI	GCAATG	1 cut(s)	1692
BsrI	ACTGG	2 cut(s)	420, 1147
BssECI	CCNNGG	5 cut(s)	376, 377, 808, 1407, 1966
BssMI	GATC	4 cut(s)	804, 1174, 1795, 2095
BssT1I	CCWWGG	2 cut(s)	808, 1407
Bst4CI	ACNGT	7 cut(s)	353, 944, 1130, 1340, 1346, 1525, 1607
Bst6I	CTCTTC	1 cut(s)	1805
BstC8I	GCNNGC	1 cut(s)	989
BstDEI	CTNAG	6 cut(s)	329, 837, 962, 1069, 1596, 1907
BstDSI	CCRYGG	2 cut(s)	808, 1407
BstF5I	GGATG	3 cut(s)	1257, 1962, 2092
BstKTI	GATC	4 cut(s)	807, 1177, 1798, 2098
BstMAI	GTCTC	3 cut(s)	302, 603, 1031
BstMBI	GATC	4 cut(s)	804, 1174, 1795, 2095
BstMWI	GCNNNNNNNGC	5 cut(s)	196, 205, 556, 842, 1143
BstNSI	RCATGY	1 cut(s)	199
BstSCI	CCNGG	2 cut(s)	376, 377
BstSFI	CTRYAG	2 cut(s)	627, 2001
BstSLI	GKGCMC	1 cut(s)	1617
BstV1I	GCAGC	3 cut(s)	66, 829, 934
BstV2I	GAAGAC	4 cut(s)	413, 764, 1201, 1865
BstX2I	RGATCY	2 cut(s)	1795, 2095
BstXI	CCANNNNNNTGG	3 cut(s)	865, 1273, 1944
BstYI	RGATCY	2 cut(s)	1795, 2095
Bsu15I	ATCGAT	1 cut(s)	1020
BsuRI	GGCC	4 cut(s)	29, 110, 1146, 1656
BsuTUI	ATCGAT	1 cut(s)	1020
BtgI	CCRYGG	2 cut(s)	808, 1407
BtgZI	GCGATG	1 cut(s)	772
BtsCI	GGATG	3 cut(s)	1257, 1962, 2092
BtsI	GCAGTG	2 cut(s)	444, 1587
BtsIMutI	CAGTG	6 cut(s)	153, 444, 845, 949, 1154, 1587
Cac8I	GCNNGC	1 cut(s)	989
Cfr13I	GGNCC	1 cut(s)	1947
Cfr9I	CCCGGG	1 cut(s)	377
ClaI	ATCGAT	1 cut(s)	1020
CseI	GACGC	4 cut(s)	188, 548, 650, 1487
DdeI	CTNAG	6 cut(s)	329, 837, 962, 1069, 1596, 1907
DpnI	GATC	4 cut(s)	806, 1176, 1797, 2097
DpnII	GATC	4 cut(s)	804, 1174, 1795, 2095
DraI	TTTAAA	1 cut(s)	286
Eam1104I	CTCTTC	1 cut(s)	1805
EarI	CTCTTC	1 cut(s)	1805
Eco130I	CCWWGG	2 cut(s)	808, 1407
Eco147I	AGGCCT	1 cut(s)	29
Eco24I	GRGCYC	1 cut(s)	1406
Eco31I	GGTCTC	1 cut(s)	302
Eco47I	GGWCC	1 cut(s)	1947
Eco57I	CTGAAG	2 cut(s)	455, 635
Eco88I	CYCGRG	2 cut(s)	377, 821
EcoRI	GAATTC	1 cut(s)	1569
EcoT14I	CCWWGG	2 cut(s)	808, 1407
EcoT22I	ATGCAT	2 cut(s)	2050, 2128
EcoT38I	GRGCYC	1 cut(s)	1406
ErhI	CCWWGG	2 cut(s)	808, 1407
FalI	AAGNNNNNCTT	2 cut(s)	450, 482
FauI	CCCGC	1 cut(s)	1555
Fnu4HI	GCNGC	3 cut(s)	55, 843, 948
FokI	GGATG	3 cut(s)	1264, 1949, 2099
FriOI	GRGCYC	1 cut(s)	1406
Fsp4HI	GCNGC	3 cut(s)	55, 843, 948
FspBI	CTAG	2 cut(s)	1043, 1511
GluI	GCNGC	3 cut(s)	55, 843, 948
GsuI	CTGGAG	2 cut(s)	887, 1920
HaeIII	GGCC	4 cut(s)	29, 110, 1146, 1656
HapII	CCGG	2 cut(s)	378, 2099
HgaI	GACGC	4 cut(s)	188, 548, 650, 1487
HincII	GTYRAC	1 cut(s)	1714
HindII	GTYRAC	1 cut(s)	1714
HinfI	GANTC	8 cut(s)	306, 317, 361, 591, 826, 1123, 1288, 1624
HpaII	CCGG	2 cut(s)	378, 2099
HphI	GGTGA	4 cut(s)	427, 847, 1099, 1204
Hpy166II	GTNNAC	2 cut(s)	1714, 1741
Hpy188I	TCNGA	5 cut(s)	474, 804, 1072, 1422, 1967
Hpy8I	GTNNAC	2 cut(s)	1714, 1741
Hpy99I	CGWCG	3 cut(s)	666, 1262, 1503
HpyAV	CCTTC	7 cut(s)	86, 451, 579, 802, 1241, 1392, 1751
HpyCH4III	ACNGT	7 cut(s)	353, 944, 1130, 1340, 1346, 1525, 1607
HpyF10VI	GCNNNNNNNGC	5 cut(s)	196, 205, 556, 842, 1143
HpyF3I	CTNAG	6 cut(s)	329, 837, 962, 1069, 1596, 1907
Kzo9I	GATC	4 cut(s)	804, 1174, 1795, 2095
LmnI	GCTCC	4 cut(s)	160, 256, 1099, 1409
Lsp1109I	GCAGC	3 cut(s)	66, 829, 934
LweI	GCATC	4 cut(s)	1042, 1590, 2035, 2113
MaeI	CTAG	2 cut(s)	1043, 1511
MaeIII	GTNAC	7 cut(s)	433, 895, 1105, 1309, 1340, 1525, 1661
MalI	GATC	4 cut(s)	806, 1176, 1797, 2097
MboI	GATC	4 cut(s)	804, 1174, 1795, 2095
MflI	RGATCY	2 cut(s)	1795, 2095
MhlI	GDGCHC	2 cut(s)	1406, 1617
MmeI	TCCRAC	1 cut(s)	1925
Mph1103I	ATGCAT	2 cut(s)	2050, 2128
MroXI	GAANNNNTTC	5 cut(s)	176, 536, 549, 1064, 1512
MseI	TTAA	9 cut(s)	285, 690, 1169, 1218, 1440, 1488, 1698, 1728, 2117
MslI	CAYNNNNRTG	3 cut(s)	264, 860, 1608
MspI	CCGG	2 cut(s)	378, 2099
MspR9I	CCNGG	2 cut(s)	378, 379
MssI	GTTTAAAC	1 cut(s)	286
Mva1269I	GAATGC	2 cut(s)	192, 333
MwoI	GCNNNNNNNGC	5 cut(s)	196, 205, 556, 842, 1143
NciI	CCSGG	2 cut(s)	378, 379
NcoI	CCATGG	2 cut(s)	808, 1407
NdeII	GATC	4 cut(s)	804, 1174, 1795, 2095
NlaIV	GGNNCC	3 cut(s)	1405, 1616, 2097
NmuCI	GTSAC	2 cut(s)	433, 1105
NsiI	ATGCAT	2 cut(s)	2050, 2128
NspI	RCATGY	1 cut(s)	199
OliI	CACNNNNGTG	1 cut(s)	1608
PaeR7I	CTCGAG	1 cut(s)	821
PceI	AGGCCT	1 cut(s)	29
PctI	GAATGC	2 cut(s)	192, 333
PdmI	GAANNNNTTC	5 cut(s)	176, 536, 549, 1064, 1512
PfeI	GAWTC	8 cut(s)	306, 317, 361, 591, 826, 1123, 1288, 1624
PflFI	GACNNNGTC	1 cut(s)	1869
PflMI	CCANNNNNTGG	1 cut(s)	235
PkrI	GCNGC	3 cut(s)	56, 844, 949
PmeI	GTTTAAAC	1 cut(s)	286
PsiI	TTATAA	1 cut(s)	914
PspN4I	GGNNCC	3 cut(s)	1405, 1616, 2097
PspPI	GGNCC	1 cut(s)	1947
PstI	CTGCAG	1 cut(s)	631
PsuI	RGATCY	2 cut(s)	1795, 2095
PsyI	GACNNNGTC	1 cut(s)	1869
RseI	CAYNNNNRTG	3 cut(s)	264, 860, 1608
SaqAI	TTAA	9 cut(s)	285, 690, 1169, 1218, 1440, 1488, 1698, 1728, 2117
SatI	GCNGC	3 cut(s)	55, 843, 948
Sau3AI	GATC	4 cut(s)	804, 1174, 1795, 2095
Sau96I	GGNCC	1 cut(s)	1947
ScrFI	CCNGG	2 cut(s)	378, 379
SduI	GDGCHC	2 cut(s)	1406, 1617
SfaNI	GCATC	4 cut(s)	1042, 1590, 2035, 2113
SfcI	CTRYAG	2 cut(s)	627, 2001
Sfr274I	CTCGAG	1 cut(s)	821
SinI	GGWCC	1 cut(s)	1947
SlaI	CTCGAG	1 cut(s)	821
SmaI	CCCGGG	1 cut(s)	379
SmiMI	CAYNNNNRTG	3 cut(s)	264, 860, 1608
SmlI	CTYRAG	2 cut(s)	23, 821
SmoI	CTYRAG	2 cut(s)	23, 821
SpeI	ACTAGT	2 cut(s)	1042, 1510
SseBI	AGGCCT	1 cut(s)	29
SsiI	CCGC	1 cut(s)	1562
SspI	AATATT	3 cut(s)	1300, 1747, 1780
SspMI	CTAG	2 cut(s)	1043, 1511
StuI	AGGCCT	1 cut(s)	29
StyD4I	CCNGG	2 cut(s)	376, 377
StyI	CCWWGG	2 cut(s)	808, 1407
TaaI	ACNGT	7 cut(s)	353, 944, 1130, 1340, 1346, 1525, 1607
TaqI	TCGA	6 cut(s)	589, 664, 822, 1020, 1260, 1622
TfiI	GAWTC	8 cut(s)	306, 317, 361, 591, 826, 1123, 1288, 1624
Tru1I	TTAA	9 cut(s)	285, 690, 1169, 1218, 1440, 1488, 1698, 1728, 2117
Tru9I	TTAA	9 cut(s)	285, 690, 1169, 1218, 1440, 1488, 1698, 1728, 2117
TscAI	CASTG	6 cut(s)	153, 451, 852, 949, 1154, 1587
TseFI	GTSAC	2 cut(s)	433, 1105
TseI	GCWGC	3 cut(s)	54, 842, 947
Tsp45I	GTSAC	2 cut(s)	433, 1105
TspDTI	ATGAA	6 cut(s)	17, 94, 107, 558, 1850, 1865
TspGWI	ACGGA	1 cut(s)	1458
TspMI	CCCGGG	1 cut(s)	377
TspRI	CASTG	6 cut(s)	153, 451, 852, 949, 1154, 1587
Tth111I	GACNNNGTC	1 cut(s)	1869
Van91I	CCANNNNNTGG	1 cut(s)	235
VpaK11BI	GGWCC	1 cut(s)	1947
XapI	RAATTY	2 cut(s)	754, 1569
XceI	RCATGY	1 cut(s)	199
XhoI	CTCGAG	1 cut(s)	821
XmaI	CCCGGG	1 cut(s)	377
XmnI	GAANNNNTTC	5 cut(s)	176, 536, 549, 1064, 1512
XspI	CTAG	2 cut(s)	1043, 1511
Zsp2I	ATGCAT	2 cut(s)	2050, 2128

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.