Pentatricopeptide repeat-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PPR_1 | PF12854 | 9 - 37 | 4e-06 | PPR repeat |
| PPR_2 | PF13041 | 10 - 46 | 1.2e-08 | PPR repeat family |
| PPR_long | PF17177 | 21 - 114 | 1e-05 | Pentacotripeptide-repeat region of PRORP |
| PPR_3 | PF13812 | 33 - 91 | 1.3e-09 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 41 - 72 | 7.2e-09 | PPR repeat |
| PPR_2 | PF13041 | 44 - 93 | 4.9e-15 | PPR repeat family |
| PPR_1 | PF12854 | 76 - 107 | 2e-06 | PPR repeat |
| PPR_2 | PF13041 | 79 - 127 | 3.5e-10 | PPR repeat family |
| PPR_1 | PF12854 | 113 - 142 | 1.9e-08 | PPR repeat |
| PPR_2 | PF13041 | 114 - 142 | 2.7e-06 | PPR repeat family |
| PPR | PF01535 | 120 - 142 | 5.1e-06 | PPR repeat |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 42 |
| Acc65I | GGTACC | 2 cut(s) | 122, 428 |
| AccB1I | GGYRCC | 2 cut(s) | 122, 428 |
| AciI | CCGC | 1 cut(s) | 126 |
| AclWI | GGATC | 1 cut(s) | 326 |
| AfaI | GTAC | 2 cut(s) | 124, 430 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 67 |
| AgsI | TTSAA | 4 cut(s) | 94, 253, 314, 326 |
| AluBI | AGCT | 1 cut(s) | 194 |
| AluI | AGCT | 1 cut(s) | 194 |
| Alw21I | GWGCWC | 1 cut(s) | 248 |
| Alw44I | GTGCAC | 1 cut(s) | 244 |
| AlwI | GGATC | 1 cut(s) | 326 |
| AoxI | GGCC | 1 cut(s) | 178 |
| ApaLI | GTGCAC | 1 cut(s) | 244 |
| Asp718I | GGTACC | 2 cut(s) | 122, 428 |
| BaeGI | GKGCMC | 1 cut(s) | 248 |
| BanI | GGYRCC | 2 cut(s) | 122, 428 |
| BanII | GRGCYC | 1 cut(s) | 447 |
| BbsI | GAAGAC | 1 cut(s) | 406 |
| Bbv12I | GWGCWC | 1 cut(s) | 248 |
| BccI | CCATC | 2 cut(s) | 365, 388 |
| BciVI | GTATCC | 1 cut(s) | 64 |
| BclI | TGATCA | 1 cut(s) | 111 |
| BfuI | GTATCC | 1 cut(s) | 64 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 177 |
| BmiI | GGNNCC | 2 cut(s) | 124, 430 |
| BmsI | GCATC | 3 cut(s) | 76, 256, 446 |
| BpiI | GAAGAC | 1 cut(s) | 406 |
| BsaBI | GATNNNNATC | 1 cut(s) | 21 |
| BsaJI | CCNNGG | 1 cut(s) | 439 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 67 |
| Bse1I | ACTGG | 1 cut(s) | 181 |
| Bse8I | GATNNNNATC | 1 cut(s) | 21 |
| BseDI | CCNNGG | 1 cut(s) | 439 |
| BseGI | GGATG | 2 cut(s) | 156, 376 |
| BseJI | GATNNNNATC | 1 cut(s) | 21 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 67 |
| BseNI | ACTGG | 1 cut(s) | 181 |
| BseRI | GAGGAG | 2 cut(s) | 402, 413 |
| BseSI | GKGCMC | 1 cut(s) | 248 |
| BshFI | GGCC | 1 cut(s) | 180 |
| BshNI | GGYRCC | 2 cut(s) | 122, 428 |
| BsiHKAI | GWGCWC | 1 cut(s) | 248 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 67 |
| BsmI | GAATGC | 1 cut(s) | 89 |
| BsnI | GGCC | 1 cut(s) | 180 |
| Bsp1286I | GDGCHC | 2 cut(s) | 248, 447 |
| Bsp143I | GATC | 4 cut(s) | 16, 111, 331, 418 |
| BspACI | CCGC | 1 cut(s) | 126 |
| BspANI | GGCC | 1 cut(s) | 180 |
| BspLI | GGNNCC | 2 cut(s) | 124, 430 |
| BspPI | GGATC | 1 cut(s) | 326 |
| BspT107I | GGYRCC | 2 cut(s) | 122, 428 |
| BsrI | ACTGG | 1 cut(s) | 181 |
| BssECI | CCNNGG | 1 cut(s) | 439 |
| BssMI | GATC | 4 cut(s) | 16, 111, 331, 418 |
| BssT1I | CCWWGG | 1 cut(s) | 439 |
| Bst4CI | ACNGT | 3 cut(s) | 49, 349, 380 |
| BstF5I | GGATG | 2 cut(s) | 156, 376 |
| BstKTI | GATC | 4 cut(s) | 19, 114, 334, 421 |
| BstMBI | GATC | 4 cut(s) | 16, 111, 331, 418 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 177 |
| BstSLI | GKGCMC | 1 cut(s) | 248 |
| BstV2I | GAAGAC | 1 cut(s) | 406 |
| BstX2I | RGATCY | 1 cut(s) | 331 |
| BstYI | RGATCY | 1 cut(s) | 331 |
| BsuI | GTATCC | 1 cut(s) | 64 |
| BsuRI | GGCC | 1 cut(s) | 180 |
| BtsCI | GGATG | 2 cut(s) | 156, 376 |
| BtsIMutI | CAGTG | 1 cut(s) | 188 |
| Csp6I | GTAC | 2 cut(s) | 123, 429 |
| CviJI | RGCY | 3 cut(s) | 180, 194, 445 |
| CviKI_1 | RGCY | 3 cut(s) | 180, 194, 445 |
| CviQI | GTAC | 2 cut(s) | 123, 429 |
| DpnI | GATC | 4 cut(s) | 18, 113, 333, 420 |
| DpnII | GATC | 4 cut(s) | 16, 111, 331, 418 |
| Eco130I | CCWWGG | 1 cut(s) | 439 |
| Eco24I | GRGCYC | 1 cut(s) | 447 |
| EcoT14I | CCWWGG | 1 cut(s) | 439 |
| EcoT22I | ATGCAT | 2 cut(s) | 91, 271 |
| EcoT38I | GRGCYC | 1 cut(s) | 447 |
| ErhI | CCWWGG | 1 cut(s) | 439 |
| FaiI | YATR | 5 cut(s) | 42, 147, 162, 308, 368 |
| FbaI | TGATCA | 1 cut(s) | 111 |
| FokI | GGATG | 2 cut(s) | 143, 383 |
| FriOI | GRGCYC | 1 cut(s) | 447 |
| HaeIII | GGCC | 1 cut(s) | 180 |
| HinfI | GANTC | 1 cut(s) | 322 |
| Hpy166II | GTNNAC | 1 cut(s) | 246 |
| Hpy188I | TCNGA | 1 cut(s) | 106 |
| Hpy188III | TCNNGA | 4 cut(s) | 14, 68, 236, 335 |
| Hpy8I | GTNNAC | 1 cut(s) | 246 |
| HpyAV | CCTTC | 1 cut(s) | 259 |
| HpyCH4III | ACNGT | 3 cut(s) | 49, 349, 380 |
| HpyCH4IV | ACGT | 1 cut(s) | 135 |
| HpyCH4V | TGCA | 4 cut(s) | 89, 246, 269, 276 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 177 |
| HpySE526I | ACGT | 1 cut(s) | 135 |
| KpnI | GGTACC | 2 cut(s) | 126, 432 |
| Ksp22I | TGATCA | 1 cut(s) | 111 |
| Kzo9I | GATC | 4 cut(s) | 16, 111, 331, 418 |
| LpnPI | CCDG | 6 cut(s) | 27, 53, 144, 194, 249, 348 |
| LweI | GCATC | 3 cut(s) | 76, 256, 446 |
| MaeII | ACGT | 1 cut(s) | 135 |
| MaeIII | GTNAC | 2 cut(s) | 349, 374 |
| MalI | GATC | 4 cut(s) | 18, 113, 333, 420 |
| MboI | GATC | 4 cut(s) | 16, 111, 331, 418 |
| MboII | GAAGA | 1 cut(s) | 406 |
| MflI | RGATCY | 1 cut(s) | 331 |
| MhlI | GDGCHC | 2 cut(s) | 248, 447 |
| MluCI | AATT | 3 cut(s) | 28, 78, 173 |
| MnlI | CCTC | 6 cut(s) | 107, 192, 274, 380, 391, 394 |
| Mph1103I | ATGCAT | 2 cut(s) | 91, 271 |
| Mva1269I | GAATGC | 1 cut(s) | 89 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 177 |
| NdeII | GATC | 4 cut(s) | 16, 111, 331, 418 |
| NlaIV | GGNNCC | 2 cut(s) | 124, 430 |
| NsiI | ATGCAT | 2 cut(s) | 91, 271 |
| PctI | GAATGC | 1 cut(s) | 89 |
| PfeI | GAWTC | 1 cut(s) | 322 |
| PsiI | TTATAA | 1 cut(s) | 42 |
| PspN4I | GGNNCC | 2 cut(s) | 124, 430 |
| PsuI | RGATCY | 1 cut(s) | 331 |
| RsaI | GTAC | 2 cut(s) | 124, 430 |
| RsaNI | GTAC | 2 cut(s) | 123, 429 |
| Sau3AI | GATC | 4 cut(s) | 16, 111, 331, 418 |
| SduI | GDGCHC | 2 cut(s) | 248, 447 |
| SetI | ASST | 6 cut(s) | 99, 138, 196, 203, 251, 343 |
| SfaNI | GCATC | 3 cut(s) | 76, 256, 446 |
| Sse9I | AATT | 3 cut(s) | 28, 78, 173 |
| SsiI | CCGC | 1 cut(s) | 126 |
| StyI | CCWWGG | 1 cut(s) | 439 |
| TaaI | ACNGT | 3 cut(s) | 49, 349, 380 |
| TaiI | ACGT | 1 cut(s) | 138 |
| TaqI | TCGA | 2 cut(s) | 417, 454 |
| TasI | AATT | 3 cut(s) | 28, 78, 173 |
| TfiI | GAWTC | 1 cut(s) | 322 |
| TscAI | CASTG | 1 cut(s) | 188 |
| TspRI | CASTG | 1 cut(s) | 188 |
| VneI | GTGCAC | 1 cut(s) | 244 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 446 |
| Zsp2I | ATGCAT | 2 cut(s) | 91, 271 |