Pentatricopeptide repeat-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PPR_2 | PF13041 | 3 - 51 | 3e-20 | PPR repeat family |
| PPR_1 | PF12854 | 3 - 30 | 1.7e-09 | PPR repeat |
| PPR | PF01535 | 6 - 35 | 1.4e-09 | PPR repeat |
| PPR_long | PF17177 | 17 - 124 | 9e-07 | Pentacotripeptide-repeat region of PRORP |
| PPR_3 | PF13812 | 26 - 82 | 6.7e-08 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 33 - 66 | 2e-13 | PPR repeat |
| PPR_2 | PF13041 | 37 - 85 | 5.4e-18 | PPR repeat family |
| PPR | PF01535 | 40 - 69 | 1.5e-08 | PPR repeat |
| PPR_2 | PF13041 | 72 - 121 | 7e-14 | PPR repeat family |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 126, 231 |
| AcoI | YGGCCR | 1 cut(s) | 205 |
| AcyI | GRCGYC | 1 cut(s) | 66 |
| AfaI | GTAC | 1 cut(s) | 335 |
| AgsI | TTSAA | 4 cut(s) | 224, 257, 316, 350 |
| AluBI | AGCT | 2 cut(s) | 18, 200 |
| AluI | AGCT | 2 cut(s) | 18, 200 |
| Alw26I | GTCTC | 2 cut(s) | 96, 170 |
| AoxI | GGCC | 2 cut(s) | 205, 247 |
| BalI | TGGCCA | 1 cut(s) | 207 |
| BccI | CCATC | 2 cut(s) | 134, 292 |
| BcoDI | GTCTC | 2 cut(s) | 96, 170 |
| BlpI | GCTNAGC | 1 cut(s) | 290 |
| BmsI | GCATC | 1 cut(s) | 160 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 290 |
| BsaHI | GRCGYC | 1 cut(s) | 66 |
| BseGI | GGATG | 1 cut(s) | 145 |
| BseRI | GAGGAG | 1 cut(s) | 172 |
| BshFI | GGCC | 2 cut(s) | 207, 249 |
| BsmAI | GTCTC | 2 cut(s) | 96, 170 |
| BsmI | GAATGC | 1 cut(s) | 78 |
| BsnI | GGCC | 2 cut(s) | 207, 249 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 290 |
| BspANI | GGCC | 2 cut(s) | 207, 249 |
| BssNI | GRCGYC | 1 cut(s) | 66 |
| Bst4CI | ACNGT | 2 cut(s) | 118, 338 |
| BstACI | GRCGYC | 1 cut(s) | 66 |
| BstC8I | GCNNGC | 1 cut(s) | 198 |
| BstDEI | CTNAG | 1 cut(s) | 290 |
| BstF5I | GGATG | 1 cut(s) | 145 |
| BstMAI | GTCTC | 2 cut(s) | 96, 170 |
| BsuRI | GGCC | 2 cut(s) | 207, 249 |
| BtsCI | GGATG | 1 cut(s) | 145 |
| BtsI | GCAGTG | 1 cut(s) | 285 |
| BtsIMutI | CAGTG | 1 cut(s) | 285 |
| Cac8I | GCNNGC | 1 cut(s) | 198 |
| CseI | GACGC | 1 cut(s) | 74 |
| Csp6I | GTAC | 1 cut(s) | 334 |
| CviJI | RGCY | 4 cut(s) | 18, 200, 207, 249 |
| CviKI_1 | RGCY | 4 cut(s) | 18, 200, 207, 249 |
| CviQI | GTAC | 1 cut(s) | 334 |
| DdeI | CTNAG | 1 cut(s) | 290 |
| EaeI | YGGCCR | 1 cut(s) | 205 |
| Eco32I | GATATC | 1 cut(s) | 325 |
| EcoRV | GATATC | 1 cut(s) | 325 |
| EcoT22I | ATGCAT | 1 cut(s) | 385 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 302, 334 |
| FokI | GGATG | 1 cut(s) | 152 |
| HaeIII | GGCC | 2 cut(s) | 207, 249 |
| HgaI | GACGC | 1 cut(s) | 74 |
| Hin1I | GRCGYC | 1 cut(s) | 66 |
| HindIII | AAGCTT | 1 cut(s) | 198 |
| Hpy188III | TCNNGA | 4 cut(s) | 83, 110, 215, 347 |
| HpyCH4III | ACNGT | 2 cut(s) | 118, 338 |
| HpyCH4IV | ACGT | 1 cut(s) | 332 |
| HpyCH4V | TGCA | 6 cut(s) | 150, 173, 196, 283, 360, 383 |
| HpyF3I | CTNAG | 1 cut(s) | 290 |
| HpySE526I | ACGT | 1 cut(s) | 332 |
| Hsp92I | GRCGYC | 1 cut(s) | 66 |
| LpnPI | CCDG | 4 cut(s) | 68, 123, 228, 263 |
| LweI | GCATC | 1 cut(s) | 160 |
| MaeII | ACGT | 1 cut(s) | 332 |
| MaeIII | GTNAC | 2 cut(s) | 118, 328 |
| MboII | GAAGA | 1 cut(s) | 335 |
| MfeI | CAATTG | 1 cut(s) | 284 |
| MlsI | TGGCCA | 1 cut(s) | 207 |
| MluCI | AATT | 2 cut(s) | 266, 284 |
| MluNI | TGGCCA | 1 cut(s) | 207 |
| MnlI | CCTC | 2 cut(s) | 150, 295 |
| Mox20I | TGGCCA | 1 cut(s) | 207 |
| Mph1103I | ATGCAT | 1 cut(s) | 385 |
| MscI | TGGCCA | 1 cut(s) | 207 |
| MslI | CAYNNNNRTG | 1 cut(s) | 134 |
| Msp20I | TGGCCA | 1 cut(s) | 207 |
| MunI | CAATTG | 1 cut(s) | 284 |
| Mva1269I | GAATGC | 1 cut(s) | 78 |
| NsiI | ATGCAT | 1 cut(s) | 385 |
| PctI | GAATGC | 1 cut(s) | 78 |
| PsiI | TTATAA | 2 cut(s) | 126, 231 |
| RsaI | GTAC | 1 cut(s) | 335 |
| RsaNI | GTAC | 1 cut(s) | 334 |
| RseI | CAYNNNNRTG | 1 cut(s) | 134 |
| SetI | ASST | 3 cut(s) | 20, 202, 335 |
| SfaNI | GCATC | 1 cut(s) | 160 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 134 |
| Sse9I | AATT | 2 cut(s) | 266, 284 |
| SspI | AATATT | 1 cut(s) | 235 |
| TaaI | ACNGT | 2 cut(s) | 118, 338 |
| TaiI | ACGT | 1 cut(s) | 335 |
| TasI | AATT | 2 cut(s) | 266, 284 |
| TscAI | CASTG | 1 cut(s) | 285 |
| TspRI | CASTG | 1 cut(s) | 285 |
| Zsp2I | ATGCAT | 1 cut(s) | 385 |