RchiOBHm_Chr5g0078811

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000021
Physical Location & Seq
Forward (+)
84639377 .. 84640123
747 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ35330

Sequence Viewer

Length: 744 bp
ATGGTTAGGAAGGGACCTATGGTTAATGTTTATAGTTGTAACATATTGATAAACGGATATTGCAAGAAGAAAAAGATTGGTGAGGCCAAGAAAGTTTTTAAGGAAATGCGTTGTAGGGAACTTATTCCTAATACCGTTACTTTTAACACTCTTATTGACGGTTTTTGTAAAGCGGGGAGAATACGAGAAGCAGAAGAGCTGTTCTCTGAGATGCAAGGTTGTGGCCAACTTCCAGATGTTCAAACTTTTTCTGTTTTACTTGATGCCCTATGCAGTAGCCAACAAGTTTCTACGGCATTAGAATTGCTTAATGAGATGGAAGCCAACAAATTGGAACTAGACGTTGTAGTTTACACTGTTGTTATTGCTGGTTTGTGTAAAGCTGGAAACATTGAATCTGCAAGAGCTGTCTTCCCTGGTTTATCATCAAAAGGAGTTCAGCCAAATGTGAGGACATTTAATGTAATGATATGTGGACTCTGTAACAGAGGCCTATTTATTGAAGCAGAAAAGTTGCTGGGAGAGATGCGAGAGAAGGGCTGTTCTCCAGATGGTTGGACCTATAACATCATTATCCGAGGGTTGTTAAATAACAATGAGACATCATGGGCTATGAAATTTATTGAAGAAATGGTAGAGTTGCGTTTCTCTGCAGATACATTAACTACGGAACTGATAGTTTGCTTATTGTCCAAGGATATAGTAGATCCGGGTTTGTTGCCGTTGTTAAAAGATTCATCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

247

Amino Acids

27.39

Weight (kDa)

5.5

Isoelectric Point (pI)

28.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_3 PF13812 1 - 54 2.7e-09 Pentatricopeptide repeat domain
PPR_1 PF12854 5 - 37 2.2e-08 PPR repeat
PPR_2 PF13041 9 - 57 8.8e-19 PPR repeat family
PPR PF01535 11 - 39 3e-08 PPR repeat
PPR_long PF17177 23 - 114 2.2e-07 Pentacotripeptide-repeat region of PRORP
PPR_1 PF12854 41 - 72 3.9e-16 PPR repeat
PPR_2 PF13041 43 - 91 3.2e-19 PPR repeat family
PPR PF01535 46 - 75 3.5e-11 PPR repeat
TPR_24 PF23276 46 - 138 2e-09 Fungal tetratrico peptide repeats
PPR_1 PF12854 75 - 107 9.4e-07 PPR repeat
PPR_3 PF13812 102 - 157 2.6e-09 Pentatricopeptide repeat domain
PPR_1 PF12854 111 - 138 2.1e-06 PPR repeat
PPR_2 PF13041 114 - 162 3.3e-14 PPR repeat family
PPR_1 PF12854 144 - 177 1.4e-10 PPR repeat
PPR_2 PF13041 148 - 196 1.7e-16 PPR repeat family
PPR PF01535 152 - 181 7.5e-09 PPR repeat
PPR_1 PF12854 179 - 212 6e-07 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000021)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G12700 AT1G12700 AT1G12700 AT1G62680 AT1G62680 AT1G62720 AT1G63230 AT1G63630 AT1G63630 AT1G64583 AT1G64583 AT3G16710 AT3G16710 AT5G16640 AT5G41170 AT5G41170
fragaria_vesca FvH4_2g40320 FvH4_3g13950 FvH4_3g31580 FvH4_3g31590 FvH4_3g33650 FvH4_3g33650 FvH4_3g33650 FvH4_3g35200 FvH4_3g36280 FvH4_3g37111 FvH4_3g37480 FvH4_3g37481 FvH4_3g38020 FvH4_3g38070 FvH4_3g38471 FvH4_3g38472 FvH4_3g38590 FvH4_3g38590 FvH4_3g38590 FvH4_3g38931 FvH4_3g38940 FvH4_3g38940 FvH4_3g39650 FvH4_3g39890 FvH4_3g39940 FvH4_3g40100 FvH4_3g40130 FvH4_3g40940 FvH4_3g40940 FvH4_3g40940 FvH4_3g41340 FvH4_3g41820 FvH4_3g42120 FvH4_3g42121 FvH4_3g42430 FvH4_3g42600 FvH4_3g42700 FvH4_3g43150 FvH4_3g43170 FvH4_3g43330 FvH4_3g44300 FvH4_4g22270 FvH4_4g22280 FvH4_5g09470 FvH4_6g52550
malus_domestica MD03G1099700.v1.1 MD03G1101000.v1.1 MD03G1103400.v1.1 MD03G1103500.v1.1 MD03G1103700.v1.1 MD03G1105300.v1.1 MD03G1106000.v1.1 MD03G1106100.v1.1 MD03G1107100.v1.1 MD03G1108100.v1.1 MD03G1113100.v1.1 MD03G1113300.v1.1 MD03G1113400.v1.1 MD03G1113500.v1.1 MD03G1113600.v1.1 MD03G1113700.v1.1 MD03G1113800.v1.1 MD04G1015600.v1.1 MD11G1115600.v1.1 MD11G1117400.v1.1 MD11G1117500.v1.1 MD11G1122400.v1.1 MD11G1126400.v1.1 MD11G1126500.v1.1 MD11G1128300.v1.1 MD11G1128400.v1.1 MD11G1128600.v1.1 MD11G1128700.v1.1 MD11G1131800.v1.1 MD11G1131900.v1.1 MD11G1132200.v1.1 MD11G1132300.v1.1 MD11G1135500.v1.1
prunus_persica Prupe.3G114600_v2.0.a1 Prupe.3G114700_v2.0.a1 Prupe.3G138000_v2.0.a1 Prupe.6G080500_v2.0.a1 Prupe.6G081600_v2.0.a1 Prupe.6G086000_v2.0.a1 Prupe.6G087400_v2.0.a1 Prupe.6G087400_v2.0.a1 Prupe.6G087400_v2.0.a1 Prupe.6G087400_v2.0.a1 Prupe.6G087600_v2.0.a1 Prupe.6G088600_v2.0.a1 Prupe.6G088600_v2.0.a1 Prupe.6G088600_v2.0.a1 Prupe.6G088600_v2.0.a1 Prupe.6G090500_v2.0.a1 Prupe.6G090600_v2.0.a1 Prupe.6G091000_v2.0.a1 Prupe.6G091400_v2.0.a1 Prupe.6G091500_v2.0.a1 Prupe.6G093300_v2.0.a1 Prupe.6G094000_v2.0.a1 Prupe.6G094000_v2.0.a1 Prupe.6G094000_v2.0.a1 Prupe.6G094000_v2.0.a1 Prupe.6G106300_v2.0.a1 Prupe.6G117200_v2.0.a1 Prupe.6G117400_v2.0.a1 Prupe.6G195600_v2.0.a1 Prupe.6G195700_v2.0.a1 Prupe.8G027800_v2.0.a1 Prupe.8G078200_v2.0.a1 Prupe.8G078200_v2.0.a1
pyrus_communis pycom03g08210 pycom03g08430 pycom03g08450 pycom03g08500 pycom03g08510 pycom03g08640 pycom03g08650 pycom03g08660 pycom04g01160 pycom11g09860 pycom11g10660 pycom11g10700 pycom11g10730 pycom11g10740 pycom11g10890 pycom11g10900 pycom11g10910 pycom11g11040 pycom11g11070 pycom11g11080 pycom11g11090 pycom11g11110 pycom11g11130 pycom11g11140 pycom11g11240
rosa_chinensis RchiOBHm_Chr2g0133531 RchiOBHm_Chr4g0407671 RchiOBHm_Chr5g0027691 RchiOBHm_Chr5g0027731 RchiOBHm_Chr5g0031841 RchiOBHm_Chr5g0041821 RchiOBHm_Chr5g0061091 RchiOBHm_Chr5g0061131 RchiOBHm_Chr5g0061141 RchiOBHm_Chr5g0062111 RchiOBHm_Chr5g0062121 RchiOBHm_Chr5g0062141 RchiOBHm_Chr5g0062151 RchiOBHm_Chr5g0062161 RchiOBHm_Chr5g0062301 RchiOBHm_Chr5g0062311 RchiOBHm_Chr5g0065171 RchiOBHm_Chr5g0066121 RchiOBHm_Chr5g0066211 RchiOBHm_Chr5g0069221 RchiOBHm_Chr5g0069231 RchiOBHm_Chr5g0069241 RchiOBHm_Chr5g0069251 RchiOBHm_Chr5g0069261 RchiOBHm_Chr5g0069321 RchiOBHm_Chr5g0069341 RchiOBHm_Chr5g0069351 RchiOBHm_Chr5g0069571 RchiOBHm_Chr5g0069581 RchiOBHm_Chr5g0069591 RchiOBHm_Chr5g0069601 RchiOBHm_Chr5g0069651 RchiOBHm_Chr5g0070751 RchiOBHm_Chr5g0071481 RchiOBHm_Chr5g0071931 RchiOBHm_Chr5g0071941 RchiOBHm_Chr5g0072771 RchiOBHm_Chr5g0072831 RchiOBHm_Chr5g0072861 RchiOBHm_Chr5g0072871 RchiOBHm_Chr5g0072901 RchiOBHm_Chr5g0072921 RchiOBHm_Chr5g0073691 RchiOBHm_Chr5g0073711 RchiOBHm_Chr5g0073761 RchiOBHm_Chr5g0074141 RchiOBHm_Chr5g0074181 RchiOBHm_Chr5g0074191 RchiOBHm_Chr5g0074201 RchiOBHm_Chr5g0074231 RchiOBHm_Chr5g0074941 RchiOBHm_Chr5g0074951 RchiOBHm_Chr5g0074961 RchiOBHm_Chr5g0074981 RchiOBHm_Chr5g0075791 RchiOBHm_Chr5g0076111 RchiOBHm_Chr5g0076121 RchiOBHm_Chr5g0076231 RchiOBHm_Chr5g0076241 RchiOBHm_Chr5g0076251 RchiOBHm_Chr5g0076261 RchiOBHm_Chr5g0077441 RchiOBHm_Chr5g0077451 RchiOBHm_Chr5g0077481 RchiOBHm_Chr5g0077511 RchiOBHm_Chr5g0077521 RchiOBHm_Chr5g0077541 RchiOBHm_Chr5g0078461 RchiOBHm_Chr5g0078471 RchiOBHm_Chr5g0078541 RchiOBHm_Chr5g0078551 RchiOBHm_Chr5g0078591 RchiOBHm_Chr5g0078611 RchiOBHm_Chr5g0078801 RchiOBHm_Chr5g0078811 RchiOBHm_Chr7g0226411 RchiOBHm_Chr7g0226421
rosa_laevigata RLG00000001731 RLG00000001921 RLG00000007507 RLG00000008174 RLG00000008512 RLG00000029432 RLG00000033036 RLG00000033038 RLG00000034096 RLG00000035428 RLG00000035433 RLG00000035434 RLG00000035435 RLG00000035535 RLG00000035536 RLG00000035548 RLG00000035751 RLG00000035754 RLG00000035764 RLG00000035882 RLG00000036044 RLG00000036048 RLG00000036060 RLG00000036061 RLG00000036062 RLG00000036063 RLG00000036070 RLG00000036078 RLG00000036079 RLG00000036080 RLG00000036156 RLG00000036218 RLG00000036219 RLG00000036263 RLG00000036264 RLG00000036331 RLG00000036332 RLG00000036333 RLG00000036338 RLG00000036339 RLG00000036344 RLG00000036345 RLG00000036347 RLG00000036348 RLG00000036349 RLG00000036405 RLG00000036416 RLG00000036457 RLG00000036459 RLG00000036515 RLG00000036516 RLG00000036517 RLG00000036646 RLG00000036697 RLG00000036698 RLG00000036699 RLG00000036702 RLG00000036774 RLG00000036775 RLG00000036786 RLG00000036787
rosa_multiflora Rmu_co8164206.1_g000001 Rmu_co8198940.1_g000001 Rmu_co8222088.1_g000001 Rmu_co8267751.1_g000001 Rmu_co8339831.1_g000001 Rmu_sc0000573.1_g000056 Rmu_sc0000573.1_g000057 Rmu_sc0000848.1_g000018 Rmu_sc0000861.1_g000039 Rmu_sc0000956.1_g000006 Rmu_sc0000956.1_g000007 Rmu_sc0000987.1_g000004 Rmu_sc0001264.1_g000011 Rmu_sc0001264.1_g000023 Rmu_sc0001366.1_g000024 Rmu_sc0001366.1_g000034 Rmu_sc0001647.1_g000023 Rmu_sc0001647.1_g000025 Rmu_sc0002101.1_g000008 Rmu_sc0002149.1_g000019 Rmu_sc0002296.1_g000015 Rmu_sc0002296.1_g000018 Rmu_sc0002627.1_g000002 Rmu_sc0002658.1_g000002 Rmu_sc0002658.1_g000004 Rmu_sc0002658.1_g000005 Rmu_sc0002658.1_g000008 Rmu_sc0003160.1_g000001 Rmu_sc0003160.1_g000002 Rmu_sc0003160.1_g000027 Rmu_sc0003264.1_g000007 Rmu_sc0003323.1_g000018 Rmu_sc0003542.1_g000014 Rmu_sc0003945.1_g000018 Rmu_sc0004140.1_g000044 Rmu_sc0004140.1_g000045 Rmu_sc0004277.1_g000049 Rmu_sc0004277.1_g000050 Rmu_sc0004277.1_g000051 Rmu_sc0004277.1_g000056 Rmu_sc0004277.1_g000059 Rmu_sc0004277.1_g000064 Rmu_sc0004277.1_g000065 Rmu_sc0004277.1_g000066 Rmu_sc0004277.1_g000071 Rmu_sc0004277.1_g000073 Rmu_sc0004277.1_g000074 Rmu_sc0004277.1_g000080 Rmu_sc0004277.1_g000081 Rmu_sc0004277.1_g000082 Rmu_sc0004501.1_g000006 Rmu_sc0004501.1_g000008 Rmu_sc0004501.1_g000009 Rmu_sc0005069.1_g000010 Rmu_sc0005069.1_g000013 Rmu_sc0005069.1_g000028 Rmu_sc0005255.1_g000008 Rmu_sc0005255.1_g000009 Rmu_sc0005860.1_g000003 Rmu_sc0005961.1_g000008 Rmu_sc0005961.1_g000009 Rmu_sc0006031.1_g000026 Rmu_sc0006952.1_g000035 Rmu_sc0006984.1_g000001 Rmu_sc0007385.1_g000011 Rmu_sc0007385.1_g000018 Rmu_sc0007385.1_g000019 Rmu_sc0007385.1_g000025 Rmu_sc0009248.1_g000008 Rmu_sc0009248.1_g000016 Rmu_sc0009685.1_g000001 Rmu_sc0009685.1_g000008 Rmu_sc0009911.1_g000004 Rmu_sc0009988.1_g000002 Rmu_sc0013565.1_g000003 Rmu_sc0013615.1_g000005 Rmu_sc0015509.1_g000001 Rmu_sc0016676.1_g000001 Rmu_sc0019146.1_g000001 Rmu_sc0023658.1_g000001 Rmu_sc0026875.1_g000001 Rmu_sc0032705.1_g000003 Rmu_sc0036016.1_g000001 Rmu_sc0038790.1_g000001 Rmu_sc0038790.1_g000002 Rmu_sc0038790.1_g000003 Rmu_sc0041070.1_g000001 Rmu_sc0041071.1_g000001
rosa_roxburghii Rroxscaffold_1G00004470 Rroxscaffold_1G00005600 Rroxscaffold_1G00006630 Rroxscaffold_1G00006640 Rroxscaffold_1G00006680 Rroxscaffold_1G00007240 Rroxscaffold_1G00007270 Rroxscaffold_1G00007600 Rroxscaffold_1G00008320 Rroxscaffold_1G00008330 Rroxscaffold_1G00008390 Rroxscaffold_1G00008400 Rroxscaffold_1G00009250 Rroxscaffold_1G00009640 Rroxscaffold_1G00010430 Rroxscaffold_1G00011430 Rroxscaffold_1G00011580 Rroxscaffold_1G00014270 Rroxscaffold_1G00017730 Rroxscaffold_1G00018390 Rroxscaffold_1G00018400 Rroxscaffold_1G00018410 Rroxscaffold_1G00018550 Rroxscaffold_1G00018580 Rroxscaffold_1G00018590 Rroxscaffold_1G00019560 Rroxscaffold_1G00038700 Rroxscaffold_1G00038710 Rroxscaffold_1G00051880 Rroxscaffold_2G00122050 Rroxscaffold_2G00122060 Rroxscaffold_2G00122070 Rroxscaffold_3G00232850 Rroxscaffold_3G00233170 Rroxscaffold_3G00235240 Rroxscaffold_3G00236030 Rroxscaffold_4G00316710 Rroxscaffold_5G00352260 Rroxscaffold_5G00354420 Rroxscaffold_5G00358050 Rroxscaffold_5G00366080 Rroxscaffold_5G00384640 Rroxscaffold_6G00394470
rosa_rugosa Rorug02G0236100 Rorug02G0312600 Rorug02G0312600 Rorug04G0081200 Rorug04G0099500 Rorug04G0125700 Rorug04G0192800 Rorug04G0192800 Rorug05G0100300 Rorug05G0195500 Rorug05G0337500 Rorug05G0338000 Rorug05G0338100 Rorug05G0338200 Rorug05G0346000 Rorug05G0346100 Rorug05G0346300 Rorug05G0346400 Rorug05G0347500 Rorug05G0347500 Rorug05G0347700 Rorug05G0347800 Rorug05G0376600 Rorug05G0376600 Rorug05G0379000 Rorug05G0396800 Rorug05G0397000 Rorug05G0397000 Rorug05G0397000 Rorug05G0397200 Rorug05G0398400 Rorug05G0398500 Rorug05G0399000 Rorug05G0412600 Rorug05G0412700 Rorug05G0415700 Rorug05G0419800 Rorug05G0419900 Rorug05G0420000 Rorug05G0420100 Rorug05G0420200 Rorug05G0420500 Rorug05G0429200 Rorug05G0429300 Rorug05G0429400 Rorug05G0429600 Rorug05G0429600 Rorug05G0442200 Rorug05G0446100 Rorug05G0446100 Rorug05G0446100 Rorug05G0446100 Rorug05G0446100 Rorug05G0446200 Rorug05G0446200 Rorug05G0446300 Rorug05G0455000 Rorug05G0455000 Rorug05G0455200 Rorug05G0455400 Rorug05G0461000 Rorug06G0021200 Rorug07G0220800 Rorug07G0237100
rosa_samantha Rh4DG139600 Rh7AG368500 Rh7DG382400
rosa_wichuraiana Rw0G005990 Rw0G015820 Rw0G023090 Rw1G011560 Rw5G026460 Rw5G037630 Rw5G040110 Rw5G042370 Rw5G042480 Rw5G042500 Rw5G042520 Rw5G043540 Rw5G043840 Rw5G044270 Rw5G044280 Rw5G044310 Rw5G044320 Rw5G044940 Rw5G045650 Rw5G045660 Rw5G045670 Rw5G046760 Rw5G047270 Rw5G047280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 173
AclWI GGATC 1 cut(s) 701
AcoI YGGCCR 1 cut(s) 223
AcsI RAATTY 1 cut(s) 617
AgsI TTSAA 4 cut(s) 242, 395, 503, 626
AjnI CCWGG 1 cut(s) 415
AluBI AGCT 3 cut(s) 199, 383, 407
AluI AGCT 3 cut(s) 199, 383, 407
Alw26I GTCTC 1 cut(s) 593
AlwI GGATC 1 cut(s) 701
AoxI GGCC 3 cut(s) 84, 223, 490
ApoI RAATTY 1 cut(s) 617
Asp700I GAANNNNTTC 1 cut(s) 123
AspS9I GGNCC 2 cut(s) 14, 558
AsuC2I CCSGG 1 cut(s) 711
AsuHPI GGTGA 1 cut(s) 92
AvaII GGWCC 2 cut(s) 14, 558
BalI TGGCCA 1 cut(s) 225
BbsI GAAGAC 1 cut(s) 403
BccI CCATC 2 cut(s) 310, 545
BceAI ACGGC 2 cut(s) 309, 706
BciT130I CCWGG 1 cut(s) 417
BcnI CCSGG 1 cut(s) 711
BcoDI GTCTC 1 cut(s) 593
BfaI CTAG 1 cut(s) 338
BfmI CTRYAG 1 cut(s) 651
Bme1390I CCNGG 2 cut(s) 417, 711
Bme18I GGWCC 2 cut(s) 14, 558
BmgT120I GGNCC 2 cut(s) 14, 558
BmiI GGNNCC 1 cut(s) 15
BmrFI CCNGG 2 cut(s) 417, 711
BmsI GCATC 3 cut(s) 201, 253, 516
BpiI GAAGAC 1 cut(s) 403
BplI GAGNNNNNCTC 2 cut(s) 188, 220
BpmI CTGGAG 1 cut(s) 531
BpuMI CCSGG 1 cut(s) 711
BsaJI CCNNGG 3 cut(s) 415, 577, 693
BseBI CCWGG 1 cut(s) 417
BseDI CCNNGG 3 cut(s) 415, 577, 693
BseMII CTCAG 1 cut(s) 198
BseYI CCCAGC 1 cut(s) 517
BshFI GGCC 3 cut(s) 86, 225, 492
BsiSI CCGG 1 cut(s) 710
BslFI GGGAC 1 cut(s) 27
BsmAI GTCTC 1 cut(s) 593
BsmFI GGGAC 1 cut(s) 27
BsnI GGCC 3 cut(s) 86, 225, 492
Bsp143I GATC 1 cut(s) 706
BspACI CCGC 1 cut(s) 173
BspANI GGCC 3 cut(s) 86, 225, 492
BspCNI CTCAG 1 cut(s) 199
BspHI TCATGA 1 cut(s) 740
BspLI GGNNCC 1 cut(s) 15
BspMAI CTGCAG 1 cut(s) 655
BspPI GGATC 1 cut(s) 701
BspQI GCTCTTC 1 cut(s) 189
BssECI CCNNGG 3 cut(s) 415, 577, 693
BssMI GATC 1 cut(s) 706
BssT1I CCWWGG 1 cut(s) 693
Bst2UI CCWGG 1 cut(s) 417
Bst4CI ACNGT 3 cut(s) 136, 161, 358
Bst6I CTCTTC 1 cut(s) 189
BstDEI CTNAG 1 cut(s) 207
BstKTI GATC 1 cut(s) 709
BstMAI GTCTC 1 cut(s) 593
BstMBI GATC 1 cut(s) 706
BstNI CCWGG 1 cut(s) 417
BstSCI CCNGG 2 cut(s) 415, 709
BstSFI CTRYAG 1 cut(s) 651
BstV2I GAAGAC 1 cut(s) 403
BstX2I RGATCY 1 cut(s) 706
BstXI CCANNNNNNTGG 2 cut(s) 331, 555
BstYI RGATCY 1 cut(s) 706
BsuRI GGCC 3 cut(s) 86, 225, 492
BtsIMutI CAGTG 1 cut(s) 354
CciI TCATGA 1 cut(s) 740
Cfr13I GGNCC 2 cut(s) 14, 558
CviAII CATG 2 cut(s) 606, 741
DdeI CTNAG 1 cut(s) 207
DpnI GATC 1 cut(s) 708
DpnII GATC 1 cut(s) 706
EaeI YGGCCR 1 cut(s) 223
Eam1104I CTCTTC 1 cut(s) 189
EarI CTCTTC 1 cut(s) 189
Eco130I CCWWGG 1 cut(s) 693
Eco147I AGGCCT 1 cut(s) 492
Eco47I GGWCC 2 cut(s) 14, 558
EcoO109I RGGNCCY 1 cut(s) 14
EcoRII CCWGG 1 cut(s) 415
EcoT14I CCWWGG 1 cut(s) 693
ErhI CCWWGG 1 cut(s) 693
FaeI CATG 2 cut(s) 609, 744
FaqI GGGAC 1 cut(s) 27
FatI CATG 2 cut(s) 605, 740
FauI CCCGC 1 cut(s) 166
FspBI CTAG 1 cut(s) 338
GsaI CCCAGC 1 cut(s) 521
GsuI CTGGAG 1 cut(s) 531
HaeIII GGCC 3 cut(s) 86, 225, 492
HapII CCGG 1 cut(s) 710
Hin1II CATG 2 cut(s) 609, 744
HinfI GANTC 3 cut(s) 395, 477, 734
HpaII CCGG 1 cut(s) 710
HphI GGTGA 1 cut(s) 92
Hpy166II GTNNAC 2 cut(s) 352, 476
Hpy188I TCNGA 2 cut(s) 208, 578
Hpy188III TCNNGA 3 cut(s) 233, 548, 741
Hpy8I GTNNAC 2 cut(s) 352, 476
HpyAV CCTTC 2 cut(s) 4, 529
HpyCH4III ACNGT 3 cut(s) 136, 161, 358
HpyCH4IV ACGT 1 cut(s) 342
HpyCH4V TGCA 5 cut(s) 63, 214, 273, 401, 653
HpyF3I CTNAG 1 cut(s) 207
HpySE526I ACGT 1 cut(s) 342
Hsp92II CATG 2 cut(s) 609, 744
Kzo9I GATC 1 cut(s) 706
LguI GCTCTTC 1 cut(s) 189
LpnPI CCDG 8 cut(s) 246, 354, 369, 402, 429, 503, 561, 723
LweI GCATC 3 cut(s) 201, 253, 516
MaeI CTAG 1 cut(s) 338
MaeII ACGT 1 cut(s) 342
MaeIII GTNAC 3 cut(s) 38, 136, 482
MalI GATC 1 cut(s) 708
MboI GATC 1 cut(s) 706
MboII GAAGA 4 cut(s) 79, 206, 403, 638
MflI RGATCY 1 cut(s) 706
MlsI TGGCCA 1 cut(s) 225
MluCI AATT 3 cut(s) 302, 329, 617
MluNI TGGCCA 1 cut(s) 225
MlyI GAGTC 1 cut(s) 471
MmeI TCCRAC 1 cut(s) 536
MnlI CCTC 4 cut(s) 76, 444, 482, 572
Mox20I TGGCCA 1 cut(s) 225
MroXI GAANNNNTTC 1 cut(s) 123
MscI TGGCCA 1 cut(s) 225
MseI TTAA 8 cut(s) 24, 99, 144, 309, 459, 587, 662, 728
Msp20I TGGCCA 1 cut(s) 225
MspI CCGG 1 cut(s) 710
MspR9I CCNGG 2 cut(s) 417, 711
MvaI CCWGG 1 cut(s) 417
NciI CCSGG 1 cut(s) 711
NdeII GATC 1 cut(s) 706
NlaIII CATG 2 cut(s) 609, 744
NlaIV GGNNCC 1 cut(s) 15
PagI TCATGA 1 cut(s) 740
PceI AGGCCT 1 cut(s) 492
PciSI GCTCTTC 1 cut(s) 189
PdmI GAANNNNTTC 1 cut(s) 123
PfeI GAWTC 2 cut(s) 395, 734
PleI GAGTC 1 cut(s) 471
PpsI GAGTC 1 cut(s) 471
PpuMI RGGWCCY 1 cut(s) 14
Psp5II RGGWCCY 1 cut(s) 14
Psp6I CCWGG 1 cut(s) 415
PspFI CCCAGC 1 cut(s) 517
PspGI CCWGG 1 cut(s) 415
PspN4I GGNNCC 1 cut(s) 15
PspPI GGNCC 2 cut(s) 14, 558
PspPPI RGGWCCY 1 cut(s) 14
PstI CTGCAG 1 cut(s) 655
PsuI RGATCY 1 cut(s) 706
SapI GCTCTTC 1 cut(s) 189
SaqAI TTAA 8 cut(s) 24, 99, 144, 309, 459, 587, 662, 728
Sau3AI GATC 1 cut(s) 706
Sau96I GGNCC 2 cut(s) 14, 558
SchI GAGTC 1 cut(s) 471
ScrFI CCNGG 2 cut(s) 417, 711
SetI ASST 7 cut(s) 19, 201, 220, 345, 385, 409, 563
SfaNI GCATC 3 cut(s) 201, 253, 516
SfcI CTRYAG 1 cut(s) 651
SinI GGWCC 2 cut(s) 14, 558
Sse9I AATT 3 cut(s) 302, 329, 617
SseBI AGGCCT 1 cut(s) 492
SsiI CCGC 1 cut(s) 173
SspMI CTAG 1 cut(s) 338
StuI AGGCCT 1 cut(s) 492
StyD4I CCNGG 2 cut(s) 415, 709
StyI CCWWGG 1 cut(s) 693
TaaI ACNGT 3 cut(s) 136, 161, 358
TaiI ACGT 1 cut(s) 345
TasI AATT 3 cut(s) 302, 329, 617
TfiI GAWTC 2 cut(s) 395, 734
Tru1I TTAA 8 cut(s) 24, 99, 144, 309, 459, 587, 662, 728
Tru9I TTAA 8 cut(s) 24, 99, 144, 309, 459, 587, 662, 728
TscAI CASTG 1 cut(s) 361
TspDTI ATGAA 2 cut(s) 629, 726
TspGWI ACGGA 2 cut(s) 69, 683
TspRI CASTG 1 cut(s) 361
VpaK11BI GGWCC 2 cut(s) 14, 558
XapI RAATTY 1 cut(s) 617
XmnI GAANNNNTTC 1 cut(s) 123
XspI CTAG 1 cut(s) 338
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.