Pentatricopeptide repeat-containing protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AgsI | TTSAA | 7 cut(s) | 91, 158, 205, 250, 323, 335, 520 |
| AhlI | ACTAGT | 1 cut(s) | 73 |
| AluBI | AGCT | 2 cut(s) | 191, 619 |
| AluI | AGCT | 2 cut(s) | 191, 619 |
| AoxI | GGCC | 1 cut(s) | 175 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 95 |
| AsuHPI | GGTGA | 2 cut(s) | 226, 235 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 60, 93 |
| BbsI | GAAGAC | 1 cut(s) | 232 |
| BccI | CCATC | 3 cut(s) | 277, 385, 572 |
| BceAI | ACGGC | 1 cut(s) | 448 |
| BciVI | GTATCC | 1 cut(s) | 61 |
| BclI | TGATCA | 1 cut(s) | 79 |
| BcuI | ACTAGT | 1 cut(s) | 73 |
| BfaI | CTAG | 2 cut(s) | 74, 173 |
| BfuI | GTATCC | 1 cut(s) | 61 |
| BmiI | GGNNCC | 2 cut(s) | 358, 436 |
| BmsI | GCATC | 2 cut(s) | 5, 538 |
| BpiI | GAAGAC | 1 cut(s) | 232 |
| BpmI | CTGGAG | 1 cut(s) | 111 |
| BsaJI | CCNNGG | 1 cut(s) | 438 |
| Bse1I | ACTGG | 1 cut(s) | 178 |
| BseDI | CCNNGG | 1 cut(s) | 438 |
| BseGI | GGATG | 2 cut(s) | 20, 288 |
| BseNI | ACTGG | 1 cut(s) | 178 |
| BshFI | GGCC | 1 cut(s) | 177 |
| BsnI | GGCC | 1 cut(s) | 177 |
| Bsp143I | GATC | 2 cut(s) | 79, 415 |
| Bsp19I | CCATGG | 1 cut(s) | 438 |
| BspANI | GGCC | 1 cut(s) | 177 |
| BspLI | GGNNCC | 2 cut(s) | 358, 436 |
| BsrI | ACTGG | 1 cut(s) | 178 |
| BssECI | CCNNGG | 1 cut(s) | 438 |
| BssMI | GATC | 2 cut(s) | 79, 415 |
| BssT1I | CCWWGG | 1 cut(s) | 438 |
| Bst4CI | ACNGT | 4 cut(s) | 56, 371, 377, 424 |
| Bst6I | CTCTTC | 1 cut(s) | 101 |
| BstC8I | GCNNGC | 1 cut(s) | 20 |
| BstDSI | CCRYGG | 1 cut(s) | 438 |
| BstF5I | GGATG | 2 cut(s) | 20, 288 |
| BstKTI | GATC | 2 cut(s) | 82, 418 |
| BstMBI | GATC | 2 cut(s) | 79, 415 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 174 |
| BstV2I | GAAGAC | 1 cut(s) | 232 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 304 |
| BsuI | GTATCC | 1 cut(s) | 61 |
| BsuRI | GGCC | 1 cut(s) | 177 |
| BtgI | CCRYGG | 1 cut(s) | 438 |
| BtsCI | GGATG | 2 cut(s) | 20, 288 |
| BtsIMutI | CAGTG | 2 cut(s) | 185, 458 |
| Cac8I | GCNNGC | 1 cut(s) | 20 |
| CseI | GACGC | 1 cut(s) | 272 |
| CviAII | CATG | 2 cut(s) | 364, 439 |
| CviJI | RGCY | 7 cut(s) | 22, 177, 191, 296, 435, 506, 619 |
| CviKI_1 | RGCY | 7 cut(s) | 22, 177, 191, 296, 435, 506, 619 |
| DpnI | GATC | 2 cut(s) | 81, 417 |
| DpnII | GATC | 2 cut(s) | 79, 415 |
| Eam1104I | CTCTTC | 1 cut(s) | 101 |
| EarI | CTCTTC | 1 cut(s) | 101 |
| Eco130I | CCWWGG | 1 cut(s) | 438 |
| EcoT14I | CCWWGG | 1 cut(s) | 438 |
| EcoT22I | ATGCAT | 1 cut(s) | 531 |
| ErhI | CCWWGG | 1 cut(s) | 438 |
| FaeI | CATG | 2 cut(s) | 367, 442 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 494, 526 |
| FatI | CATG | 2 cut(s) | 363, 438 |
| FauNDI | CATATG | 2 cut(s) | 352, 534 |
| FbaI | TGATCA | 1 cut(s) | 79 |
| FokI | GGATG | 2 cut(s) | 27, 295 |
| FspBI | CTAG | 2 cut(s) | 74, 173 |
| GsuI | CTGGAG | 1 cut(s) | 111 |
| HaeIII | GGCC | 1 cut(s) | 177 |
| HgaI | GACGC | 1 cut(s) | 272 |
| Hin1II | CATG | 2 cut(s) | 367, 442 |
| HincII | GTYRAC | 1 cut(s) | 262 |
| HindII | GTYRAC | 1 cut(s) | 262 |
| HinfI | GANTC | 4 cut(s) | 154, 162, 217, 319 |
| HphI | GGTGA | 2 cut(s) | 226, 235 |
| Hpy166II | GTNNAC | 1 cut(s) | 262 |
| Hpy188III | TCNNGA | 3 cut(s) | 128, 233, 548 |
| Hpy8I | GTNNAC | 1 cut(s) | 262 |
| HpyAV | CCTTC | 1 cut(s) | 256 |
| HpyCH4III | ACNGT | 4 cut(s) | 56, 371, 377, 424 |
| HpyCH4IV | ACGT | 1 cut(s) | 132 |
| HpyCH4V | TGCA | 5 cut(s) | 168, 382, 483, 529, 588 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 174 |
| HpySE526I | ACGT | 1 cut(s) | 132 |
| Hsp92II | CATG | 2 cut(s) | 367, 442 |
| Ksp22I | TGATCA | 1 cut(s) | 79 |
| Kzo9I | GATC | 2 cut(s) | 79, 415 |
| LmnI | GCTCC | 2 cut(s) | 130, 440 |
| LpnPI | CCDG | 5 cut(s) | 36, 141, 191, 246, 561 |
| LweI | GCATC | 2 cut(s) | 5, 538 |
| MaeI | CTAG | 2 cut(s) | 74, 173 |
| MaeII | ACGT | 1 cut(s) | 132 |
| MaeIII | GTNAC | 3 cut(s) | 136, 371, 458 |
| MalI | GATC | 2 cut(s) | 81, 417 |
| MboI | GATC | 2 cut(s) | 79, 415 |
| MboII | GAAGA | 3 cut(s) | 17, 88, 232 |
| MluCI | AATT | 1 cut(s) | 330 |
| MlyI | GAGTC | 2 cut(s) | 171, 226 |
| MnlI | CCTC | 6 cut(s) | 5, 104, 110, 271, 320, 371 |
| Mph1103I | ATGCAT | 1 cut(s) | 531 |
| MroXI | GAANNNNTTC | 1 cut(s) | 95 |
| MseI | TTAA | 2 cut(s) | 39, 444 |
| MslI | CAYNNNNRTG | 1 cut(s) | 104 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 174 |
| NcoI | CCATGG | 1 cut(s) | 438 |
| NdeI | CATATG | 2 cut(s) | 352, 534 |
| NdeII | GATC | 2 cut(s) | 79, 415 |
| NlaIII | CATG | 2 cut(s) | 367, 442 |
| NlaIV | GGNNCC | 2 cut(s) | 358, 436 |
| NmuCI | GTSAC | 1 cut(s) | 136 |
| NsiI | ATGCAT | 1 cut(s) | 531 |
| PdmI | GAANNNNTTC | 1 cut(s) | 95 |
| PfeI | GAWTC | 2 cut(s) | 154, 319 |
| PflFI | GACNNNGTC | 1 cut(s) | 134 |
| PleI | GAGTC | 2 cut(s) | 170, 225 |
| PpsI | GAGTC | 2 cut(s) | 170, 225 |
| PspN4I | GGNNCC | 2 cut(s) | 358, 436 |
| PsyI | GACNNNGTC | 1 cut(s) | 134 |
| RseI | CAYNNNNRTG | 1 cut(s) | 104 |
| SaqAI | TTAA | 2 cut(s) | 39, 444 |
| Sau3AI | GATC | 2 cut(s) | 79, 415 |
| SchI | GAGTC | 2 cut(s) | 171, 226 |
| SfaNI | GCATC | 2 cut(s) | 5, 538 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 104 |
| SpeI | ACTAGT | 1 cut(s) | 73 |
| Sse9I | AATT | 1 cut(s) | 330 |
| SspMI | CTAG | 2 cut(s) | 74, 173 |
| StyI | CCWWGG | 1 cut(s) | 438 |
| TaaI | ACNGT | 4 cut(s) | 56, 371, 377, 424 |
| TaiI | ACGT | 1 cut(s) | 135 |
| TaqI | TCGA | 1 cut(s) | 51 |
| TasI | AATT | 1 cut(s) | 330 |
| TfiI | GAWTC | 2 cut(s) | 154, 319 |
| Tru1I | TTAA | 2 cut(s) | 39, 444 |
| Tru9I | TTAA | 2 cut(s) | 39, 444 |
| TscAI | CASTG | 2 cut(s) | 185, 458 |
| TseFI | GTSAC | 1 cut(s) | 136 |
| Tsp45I | GTSAC | 1 cut(s) | 136 |
| TspDTI | ATGAA | 2 cut(s) | 222, 551 |
| TspGWI | ACGGA | 1 cut(s) | 489 |
| TspRI | CASTG | 2 cut(s) | 185, 458 |
| Tth111I | GACNNNGTC | 1 cut(s) | 134 |
| XmnI | GAANNNNTTC | 1 cut(s) | 95 |
| XspI | CTAG | 2 cut(s) | 74, 173 |
| Zsp2I | ATGCAT | 1 cut(s) | 531 |