Pentatricopeptide repeat-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Exo5 | PF09810 | 97 - 218 | 1.4e-27 | Exonuclease V - a 5' deoxyribonuclease |
| PDDEXK_1 | PF12705 | 165 - 387 | 2.2e-06 | PD-(D/E)XK nuclease superfamily |
| Exo5 | PF09810 | 221 - 290 | 4.6e-08 | Exonuclease V - a 5' deoxyribonuclease |
| Exo5 | PF09810 | 321 - 386 | 4.8e-11 | Exonuclease V - a 5' deoxyribonuclease |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 3 cut(s) | 252, 301, 327 |
| AclWI | GGATC | 3 cut(s) | 42, 937, 950 |
| AcsI | RAATTY | 1 cut(s) | 464 |
| AcuI | CTGAAG | 6 cut(s) | 164, 289, 591, 876, 1043, 1131 |
| AfaI | GTAC | 3 cut(s) | 185, 374, 926 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 171, 599 |
| AflIII | ACRYGT | 1 cut(s) | 1154 |
| AgsI | TTSAA | 5 cut(s) | 259, 446, 538, 647, 752 |
| AjnI | CCWGG | 1 cut(s) | 938 |
| AluBI | AGCT | 4 cut(s) | 589, 871, 878, 1173 |
| AluI | AGCT | 4 cut(s) | 589, 871, 878, 1173 |
| Alw21I | GWGCWC | 2 cut(s) | 873, 961 |
| Alw26I | GTCTC | 1 cut(s) | 180 |
| AlwI | GGATC | 3 cut(s) | 42, 937, 950 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1176 |
| Ama87I | CYCGRG | 1 cut(s) | 582 |
| AoxI | GGCC | 2 cut(s) | 111, 522 |
| ApaI | GGGCCC | 1 cut(s) | 526 |
| ApeKI | GCWGC | 3 cut(s) | 589, 1167, 1170 |
| ApoI | RAATTY | 1 cut(s) | 464 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 483, 515, 800, 832 |
| AspLEI | GCGC | 1 cut(s) | 432 |
| AspS9I | GGNCC | 2 cut(s) | 522, 523 |
| AsuC2I | CCSGG | 1 cut(s) | 234 |
| AsuHPI | GGTGA | 1 cut(s) | 184 |
| AvaI | CYCGRG | 1 cut(s) | 582 |
| AxyI | CCTNAGG | 1 cut(s) | 527 |
| BaeGI | GKGCMC | 2 cut(s) | 75, 526 |
| BamHI | GGATCC | 1 cut(s) | 942 |
| BanII | GRGCYC | 2 cut(s) | 526, 873 |
| BauI | CACGAG | 1 cut(s) | 699 |
| Bbv12I | GWGCWC | 2 cut(s) | 873, 961 |
| BbvI | GCAGC | 2 cut(s) | 576, 1154 |
| BccI | CCATC | 5 cut(s) | 103, 197, 616, 1034, 1116 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1110, 1144 |
| BciT130I | CCWGG | 1 cut(s) | 940 |
| BclI | TGATCA | 1 cut(s) | 820 |
| BcnI | CCSGG | 1 cut(s) | 234 |
| BcoDI | GTCTC | 1 cut(s) | 180 |
| BfaI | CTAG | 3 cut(s) | 785, 875, 1082 |
| BfmI | CTRYAG | 3 cut(s) | 928, 1161, 1168 |
| BfoI | RGCGCY | 1 cut(s) | 433 |
| BisI | GCNGC | 3 cut(s) | 590, 1168, 1171 |
| BlsI | GCNGC | 3 cut(s) | 591, 1169, 1172 |
| BmcAI | AGTACT | 1 cut(s) | 185 |
| Bme1390I | CCNGG | 2 cut(s) | 234, 940 |
| BmeT110I | CYCGRG | 1 cut(s) | 582 |
| BmgT120I | GGNCC | 2 cut(s) | 522, 523 |
| BmiI | GGNNCC | 3 cut(s) | 212, 524, 944 |
| BmrFI | CCNGG | 2 cut(s) | 234, 940 |
| BmsI | GCATC | 1 cut(s) | 800 |
| BpuEI | CTTGAG | 1 cut(s) | 1091 |
| BpuMI | CCSGG | 1 cut(s) | 234 |
| Bsa29I | ATCGAT | 1 cut(s) | 1011 |
| BsaBI | GATNNNNATC | 1 cut(s) | 39 |
| BsaI | GGTCTC | 1 cut(s) | 180 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 171, 599 |
| Bse1I | ACTGG | 3 cut(s) | 391, 424, 1098 |
| Bse21I | CCTNAGG | 1 cut(s) | 527 |
| Bse8I | GATNNNNATC | 1 cut(s) | 39 |
| BseBI | CCWGG | 1 cut(s) | 940 |
| BseCI | ATCGAT | 1 cut(s) | 1011 |
| BseGI | GGATG | 3 cut(s) | 52, 58, 627 |
| BseJI | GATNNNNATC | 1 cut(s) | 39 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 171, 599 |
| BseMII | CTCAG | 2 cut(s) | 518, 819 |
| BseNI | ACTGG | 3 cut(s) | 391, 424, 1098 |
| BseRI | GAGGAG | 1 cut(s) | 223 |
| BseSI | GKGCMC | 2 cut(s) | 75, 526 |
| BseXI | GCAGC | 2 cut(s) | 576, 1154 |
| BshFI | GGCC | 2 cut(s) | 113, 524 |
| BshVI | ATCGAT | 1 cut(s) | 1011 |
| BsiHKAI | GWGCWC | 2 cut(s) | 873, 961 |
| BsiHKCI | CYCGRG | 1 cut(s) | 582 |
| BsiSI | CCGG | 1 cut(s) | 234 |
| BslFI | GGGAC | 1 cut(s) | 642 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 171, 599 |
| BsmAI | GTCTC | 1 cut(s) | 180 |
| BsmFI | GGGAC | 1 cut(s) | 642 |
| BsmI | GAATGC | 1 cut(s) | 155 |
| BsnI | GGCC | 2 cut(s) | 113, 524 |
| Bso31I | GGTCTC | 1 cut(s) | 180 |
| BsoBI | CYCGRG | 1 cut(s) | 582 |
| Bsp120I | GGGCCC | 1 cut(s) | 522 |
| Bsp1286I | GDGCHC | 4 cut(s) | 75, 526, 873, 961 |
| Bsp143I | GATC | 3 cut(s) | 34, 820, 942 |
| BspACI | CCGC | 3 cut(s) | 252, 301, 327 |
| BspANI | GGCC | 2 cut(s) | 113, 524 |
| BspCNI | CTCAG | 2 cut(s) | 519, 818 |
| BspDI | ATCGAT | 1 cut(s) | 1011 |
| BspHI | TCATGA | 1 cut(s) | 961 |
| BspLI | GGNNCC | 3 cut(s) | 212, 524, 944 |
| BspMAI | CTGCAG | 2 cut(s) | 1165, 1172 |
| BspPI | GGATC | 3 cut(s) | 42, 937, 950 |
| BspQI | GCTCTTC | 2 cut(s) | 125, 1110 |
| BspTNI | GGTCTC | 1 cut(s) | 180 |
| BsrI | ACTGG | 3 cut(s) | 391, 424, 1098 |
| BssMI | GATC | 3 cut(s) | 34, 820, 942 |
| BssSI | CACGAG | 1 cut(s) | 699 |
| Bst2BI | CACGAG | 1 cut(s) | 699 |
| Bst2UI | CCWGG | 1 cut(s) | 940 |
| Bst4CI | ACNGT | 1 cut(s) | 148 |
| Bst6I | CTCTTC | 5 cut(s) | 99, 125, 183, 444, 1110 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1176 |
| BstC8I | GCNNGC | 2 cut(s) | 127, 1165 |
| BstDEI | CTNAG | 2 cut(s) | 527, 805 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 597 |
| BstF5I | GGATG | 3 cut(s) | 52, 58, 627 |
| BstH2I | RGCGCY | 1 cut(s) | 433 |
| BstHHI | GCGC | 1 cut(s) | 432 |
| BstKTI | GATC | 3 cut(s) | 37, 823, 945 |
| BstMAI | GTCTC | 1 cut(s) | 180 |
| BstMBI | GATC | 3 cut(s) | 34, 820, 942 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 1087, 1103, 1176 |
| BstNI | CCWGG | 1 cut(s) | 940 |
| BstNSI | RCATGY | 1 cut(s) | 1158 |
| BstSCI | CCNGG | 2 cut(s) | 232, 938 |
| BstSFI | CTRYAG | 3 cut(s) | 928, 1161, 1168 |
| BstSLI | GKGCMC | 2 cut(s) | 75, 526 |
| BstV1I | GCAGC | 2 cut(s) | 576, 1154 |
| BstX2I | RGATCY | 1 cut(s) | 942 |
| BstYI | RGATCY | 1 cut(s) | 942 |
| Bsu15I | ATCGAT | 1 cut(s) | 1011 |
| Bsu36I | CCTNAGG | 1 cut(s) | 527 |
| BsuRI | GGCC | 2 cut(s) | 113, 524 |
| BsuTUI | ATCGAT | 1 cut(s) | 1011 |
| BtgZI | GCGATG | 1 cut(s) | 1135 |
| BtsCI | GGATG | 3 cut(s) | 52, 58, 627 |
| BtsIMutI | CAGTG | 1 cut(s) | 153 |
| Cac8I | GCNNGC | 2 cut(s) | 127, 1165 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1176 |
| CciI | TCATGA | 1 cut(s) | 961 |
| CfoI | GCGC | 1 cut(s) | 432 |
| Cfr13I | GGNCC | 2 cut(s) | 522, 523 |
| ClaI | ATCGAT | 1 cut(s) | 1011 |
| CseI | GACGC | 1 cut(s) | 157 |
| Csp6I | GTAC | 3 cut(s) | 184, 373, 925 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 319, 354 |
| CviAII | CATG | 3 cut(s) | 434, 962, 1155 |
| CviQI | GTAC | 3 cut(s) | 184, 373, 925 |
| DdeI | CTNAG | 2 cut(s) | 527, 805 |
| DpnI | GATC | 3 cut(s) | 36, 822, 944 |
| DpnII | GATC | 3 cut(s) | 34, 820, 942 |
| DraI | TTTAAA | 1 cut(s) | 469 |
| Eam1104I | CTCTTC | 5 cut(s) | 99, 125, 183, 444, 1110 |
| EarI | CTCTTC | 5 cut(s) | 99, 125, 183, 444, 1110 |
| EciI | GGCGGA | 1 cut(s) | 316 |
| Ecl136II | GAGCTC | 1 cut(s) | 871 |
| Eco24I | GRGCYC | 2 cut(s) | 526, 873 |
| Eco31I | GGTCTC | 1 cut(s) | 180 |
| Eco53kI | GAGCTC | 1 cut(s) | 871 |
| Eco57I | CTGAAG | 6 cut(s) | 164, 289, 591, 876, 1043, 1131 |
| Eco81I | CCTNAGG | 1 cut(s) | 527 |
| Eco88I | CYCGRG | 1 cut(s) | 582 |
| EcoICRI | GAGCTC | 1 cut(s) | 871 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 597 |
| EcoO109I | RGGNCCY | 1 cut(s) | 523 |
| EcoRII | CCWGG | 1 cut(s) | 938 |
| EcoT38I | GRGCYC | 2 cut(s) | 526, 873 |
| FaeI | CATG | 3 cut(s) | 437, 965, 1158 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 305, 337, 699, 731 |
| FaqI | GGGAC | 1 cut(s) | 642 |
| FatI | CATG | 3 cut(s) | 433, 961, 1154 |
| FauI | CCCGC | 1 cut(s) | 245 |
| FbaI | TGATCA | 1 cut(s) | 820 |
| Fnu4HI | GCNGC | 3 cut(s) | 590, 1168, 1171 |
| FokI | GGATG | 3 cut(s) | 39, 45, 634 |
| FriOI | GRGCYC | 2 cut(s) | 526, 873 |
| Fsp4HI | GCNGC | 3 cut(s) | 590, 1168, 1171 |
| FspBI | CTAG | 3 cut(s) | 785, 875, 1082 |
| GlaI | GCGC | 1 cut(s) | 431 |
| GluI | GCNGC | 3 cut(s) | 590, 1168, 1171 |
| HaeII | RGCGCY | 1 cut(s) | 433 |
| HaeIII | GGCC | 2 cut(s) | 113, 524 |
| HapII | CCGG | 1 cut(s) | 234 |
| HgaI | GACGC | 1 cut(s) | 157 |
| HhaI | GCGC | 1 cut(s) | 432 |
| Hin1II | CATG | 3 cut(s) | 437, 965, 1158 |
| Hin6I | GCGC | 1 cut(s) | 430 |
| HinP1I | GCGC | 1 cut(s) | 430 |
| HincII | GTYRAC | 1 cut(s) | 688 |
| HindII | GTYRAC | 1 cut(s) | 688 |
| HpaII | CCGG | 1 cut(s) | 234 |
| HphI | GGTGA | 1 cut(s) | 184 |
| Hpy166II | GTNNAC | 1 cut(s) | 688 |
| Hpy188I | TCNGA | 8 cut(s) | 19, 349, 487, 508, 724, 808, 856, 1039 |
| Hpy8I | GTNNAC | 1 cut(s) | 688 |
| Hpy99I | CGWCG | 1 cut(s) | 104 |
| HpyCH4III | ACNGT | 1 cut(s) | 148 |
| HpyCH4IV | ACGT | 2 cut(s) | 613, 915 |
| HpyCH4V | TGCA | 6 cut(s) | 298, 437, 608, 1028, 1163, 1170 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 1087, 1103, 1176 |
| HpyF3I | CTNAG | 2 cut(s) | 527, 805 |
| HpySE526I | ACGT | 2 cut(s) | 613, 915 |
| Hsp92II | CATG | 3 cut(s) | 437, 965, 1158 |
| HspAI | GCGC | 1 cut(s) | 430 |
| Ksp22I | TGATCA | 1 cut(s) | 820 |
| Kzo9I | GATC | 3 cut(s) | 34, 820, 942 |
| LguI | GCTCTTC | 2 cut(s) | 125, 1110 |
| LmnI | GCTCC | 7 cut(s) | 210, 230, 427, 868, 876, 1111, 1178 |
| Lsp1109I | GCAGC | 2 cut(s) | 576, 1154 |
| LweI | GCATC | 1 cut(s) | 800 |
| MaeI | CTAG | 3 cut(s) | 785, 875, 1082 |
| MaeII | ACGT | 2 cut(s) | 613, 915 |
| MaeIII | GTNAC | 5 cut(s) | 457, 655, 845, 987, 1100 |
| MalI | GATC | 3 cut(s) | 36, 822, 944 |
| MboI | GATC | 3 cut(s) | 34, 820, 942 |
| MfeI | CAATTG | 2 cut(s) | 84, 752 |
| MflI | RGATCY | 1 cut(s) | 942 |
| MhlI | GDGCHC | 4 cut(s) | 75, 526, 873, 961 |
| MlyI | GAGTC | 7 cut(s) | 14, 17, 21, 353, 574, 691, 1028 |
| MmeI | TCCRAC | 2 cut(s) | 42, 327 |
| MseI | TTAA | 3 cut(s) | 468, 833, 1047 |
| MspI | CCGG | 1 cut(s) | 234 |
| MspR9I | CCNGG | 2 cut(s) | 234, 940 |
| MunI | CAATTG | 2 cut(s) | 84, 752 |
| Mva1269I | GAATGC | 1 cut(s) | 155 |
| MvaI | CCWGG | 1 cut(s) | 940 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 1087, 1103, 1176 |
| NciI | CCSGG | 1 cut(s) | 234 |
| NdeII | GATC | 3 cut(s) | 34, 820, 942 |
| NlaIII | CATG | 3 cut(s) | 437, 965, 1158 |
| NlaIV | GGNNCC | 3 cut(s) | 212, 524, 944 |
| NmuCI | GTSAC | 2 cut(s) | 655, 845 |
| NspI | RCATGY | 1 cut(s) | 1158 |
| PaeR7I | CTCGAG | 1 cut(s) | 582 |
| PagI | TCATGA | 1 cut(s) | 961 |
| PciI | ACATGT | 1 cut(s) | 1154 |
| PciSI | GCTCTTC | 2 cut(s) | 125, 1110 |
| PctI | GAATGC | 1 cut(s) | 155 |
| PfeI | GAWTC | 3 cut(s) | 245, 287, 798 |
| PflFI | GACNNNGTC | 1 cut(s) | 7 |
| PfoI | TCCNGGA | 1 cut(s) | 938 |
| PkrI | GCNGC | 3 cut(s) | 591, 1169, 1172 |
| PleI | GAGTC | 7 cut(s) | 14, 16, 21, 352, 574, 691, 1028 |
| PpsI | GAGTC | 7 cut(s) | 14, 16, 21, 352, 574, 691, 1028 |
| PscI | ACATGT | 1 cut(s) | 1154 |
| Psp124BI | GAGCTC | 1 cut(s) | 873 |
| Psp6I | CCWGG | 1 cut(s) | 938 |
| PspGI | CCWGG | 1 cut(s) | 938 |
| PspN4I | GGNNCC | 3 cut(s) | 212, 524, 944 |
| PspOMI | GGGCCC | 1 cut(s) | 522 |
| PspPI | GGNCC | 2 cut(s) | 522, 523 |
| PstI | CTGCAG | 2 cut(s) | 1165, 1172 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1176 |
| PsuI | RGATCY | 1 cut(s) | 942 |
| PsyI | GACNNNGTC | 1 cut(s) | 7 |
| RsaI | GTAC | 3 cut(s) | 185, 374, 926 |
| RsaNI | GTAC | 3 cut(s) | 184, 373, 925 |
| SacI | GAGCTC | 1 cut(s) | 873 |
| SapI | GCTCTTC | 2 cut(s) | 125, 1110 |
| SaqAI | TTAA | 3 cut(s) | 468, 833, 1047 |
| SatI | GCNGC | 3 cut(s) | 590, 1168, 1171 |
| Sau3AI | GATC | 3 cut(s) | 34, 820, 942 |
| Sau96I | GGNCC | 2 cut(s) | 522, 523 |
| SbfI | CCTGCAGG | 1 cut(s) | 1165 |
| ScaI | AGTACT | 1 cut(s) | 185 |
| SchI | GAGTC | 7 cut(s) | 14, 17, 21, 353, 574, 691, 1028 |
| ScrFI | CCNGG | 2 cut(s) | 234, 940 |
| SdaI | CCTGCAGG | 1 cut(s) | 1165 |
| SduI | GDGCHC | 4 cut(s) | 75, 526, 873, 961 |
| SfaNI | GCATC | 1 cut(s) | 800 |
| SfcI | CTRYAG | 3 cut(s) | 928, 1161, 1168 |
| Sfr274I | CTCGAG | 1 cut(s) | 582 |
| SlaI | CTCGAG | 1 cut(s) | 582 |
| SmlI | CTYRAG | 2 cut(s) | 582, 1070 |
| SmoI | CTYRAG | 2 cut(s) | 582, 1070 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 1165 |
| SsiI | CCGC | 3 cut(s) | 252, 301, 327 |
| SspMI | CTAG | 3 cut(s) | 785, 875, 1082 |
| SstI | GAGCTC | 1 cut(s) | 873 |
| StyD4I | CCNGG | 2 cut(s) | 232, 938 |
| TaaI | ACNGT | 1 cut(s) | 148 |
| TaiI | ACGT | 2 cut(s) | 616, 918 |
| TaqI | TCGA | 2 cut(s) | 583, 1011 |
| TatI | WGTACW | 1 cut(s) | 183 |
| TfiI | GAWTC | 3 cut(s) | 245, 287, 798 |
| Tru1I | TTAA | 3 cut(s) | 468, 833, 1047 |
| Tru9I | TTAA | 3 cut(s) | 468, 833, 1047 |
| TscAI | CASTG | 1 cut(s) | 153 |
| TseFI | GTSAC | 2 cut(s) | 655, 845 |
| TseI | GCWGC | 3 cut(s) | 589, 1167, 1170 |
| Tsp45I | GTSAC | 2 cut(s) | 655, 845 |
| TspDTI | ATGAA | 2 cut(s) | 428, 1029 |
| TspGWI | ACGGA | 1 cut(s) | 20 |
| TspRI | CASTG | 1 cut(s) | 153 |
| Tth111I | GACNNNGTC | 1 cut(s) | 7 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 597 |
| XapI | RAATTY | 1 cut(s) | 464 |
| XbaI | TCTAGA | 1 cut(s) | 784 |
| XceI | RCATGY | 1 cut(s) | 1158 |
| XhoI | CTCGAG | 1 cut(s) | 582 |
| XspI | CTAG | 3 cut(s) | 785, 875, 1082 |
| ZrmI | AGTACT | 1 cut(s) | 185 |