Pentatricopeptide repeat-containing protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 240 |
| AccII | CGCG | 1 cut(s) | 145 |
| AcuI | CTGAAG | 1 cut(s) | 137 |
| AgsI | TTSAA | 6 cut(s) | 229, 307, 349, 362, 382, 490 |
| AjnI | CCWGG | 1 cut(s) | 333 |
| AluBI | AGCT | 1 cut(s) | 536 |
| AluI | AGCT | 1 cut(s) | 536 |
| Alw26I | GTCTC | 1 cut(s) | 248 |
| AoxI | GGCC | 1 cut(s) | 337 |
| ApeKI | GCWGC | 2 cut(s) | 428, 533 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 122, 135, 256 |
| AspS9I | GGNCC | 1 cut(s) | 337 |
| BbsI | GAAGAC | 1 cut(s) | 350 |
| BbvCI | CCTCAGC | 1 cut(s) | 423 |
| BbvI | GCAGC | 2 cut(s) | 440, 545 |
| BceAI | ACGGC | 1 cut(s) | 412 |
| BciT130I | CCWGG | 1 cut(s) | 335 |
| BcoDI | GTCTC | 1 cut(s) | 248 |
| BfaI | CTAG | 1 cut(s) | 75 |
| BglII | AGATCT | 1 cut(s) | 177 |
| BisI | GCNGC | 2 cut(s) | 429, 534 |
| BlsI | GCNGC | 2 cut(s) | 430, 535 |
| Bme1390I | CCNGG | 1 cut(s) | 335 |
| BmgT120I | GGNCC | 1 cut(s) | 337 |
| BmrFI | CCNGG | 1 cut(s) | 335 |
| BmsI | GCATC | 1 cut(s) | 100 |
| BpiI | GAAGAC | 1 cut(s) | 350 |
| Bpu10I | CCTNAGC | 1 cut(s) | 423 |
| BsaI | GGTCTC | 1 cut(s) | 248 |
| BsaJI | CCNNGG | 1 cut(s) | 334 |
| BseBI | CCWGG | 1 cut(s) | 335 |
| BseDI | CCNNGG | 1 cut(s) | 334 |
| BseGI | GGATG | 2 cut(s) | 115, 481 |
| BseMII | CTCAG | 2 cut(s) | 188, 414 |
| BseRI | GAGGAG | 2 cut(s) | 15, 18 |
| BseXI | GCAGC | 2 cut(s) | 440, 545 |
| BsgI | GTGCAG | 1 cut(s) | 552 |
| Bsh1236I | CGCG | 1 cut(s) | 145 |
| BshFI | GGCC | 1 cut(s) | 339 |
| BsiSI | CCGG | 1 cut(s) | 473 |
| BsmAI | GTCTC | 1 cut(s) | 248 |
| BsnI | GGCC | 1 cut(s) | 339 |
| Bso31I | GGTCTC | 1 cut(s) | 248 |
| Bsp143I | GATC | 1 cut(s) | 177 |
| BspANI | GGCC | 1 cut(s) | 339 |
| BspCNI | CTCAG | 2 cut(s) | 187, 415 |
| BspFNI | CGCG | 1 cut(s) | 145 |
| BspTNI | GGTCTC | 1 cut(s) | 248 |
| BssECI | CCNNGG | 1 cut(s) | 334 |
| BssMI | GATC | 1 cut(s) | 177 |
| Bst2UI | CCWGG | 1 cut(s) | 335 |
| Bst4CI | ACNGT | 1 cut(s) | 530 |
| BstC8I | GCNNGC | 1 cut(s) | 86 |
| BstDEI | CTNAG | 2 cut(s) | 174, 423 |
| BstF5I | GGATG | 2 cut(s) | 115, 481 |
| BstFNI | CGCG | 1 cut(s) | 145 |
| BstKTI | GATC | 1 cut(s) | 180 |
| BstMAI | GTCTC | 1 cut(s) | 248 |
| BstMBI | GATC | 1 cut(s) | 177 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 142, 151, 428 |
| BstNI | CCWGG | 1 cut(s) | 335 |
| BstSCI | CCNGG | 1 cut(s) | 333 |
| BstUI | CGCG | 1 cut(s) | 145 |
| BstV1I | GCAGC | 2 cut(s) | 440, 545 |
| BstV2I | GAAGAC | 1 cut(s) | 350 |
| BstX2I | RGATCY | 1 cut(s) | 177 |
| BstYI | RGATCY | 1 cut(s) | 177 |
| BsuRI | GGCC | 1 cut(s) | 339 |
| BtsCI | GGATG | 2 cut(s) | 115, 481 |
| BtsIMutI | CAGTG | 1 cut(s) | 535 |
| Cac8I | GCNNGC | 1 cut(s) | 86 |
| Cfr13I | GGNCC | 1 cut(s) | 337 |
| CseI | GACGC | 1 cut(s) | 134 |
| DdeI | CTNAG | 2 cut(s) | 174, 423 |
| DpnI | GATC | 1 cut(s) | 179 |
| DpnII | GATC | 1 cut(s) | 177 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 240 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 240 |
| Eco31I | GGTCTC | 1 cut(s) | 248 |
| Eco57I | CTGAAG | 1 cut(s) | 137 |
| EcoRII | CCWGG | 1 cut(s) | 333 |
| FaiI | YATR | 2 cut(s) | 7, 270 |
| Fnu4HI | GCNGC | 2 cut(s) | 429, 534 |
| FokI | GGATG | 2 cut(s) | 122, 488 |
| Fsp4HI | GCNGC | 2 cut(s) | 429, 534 |
| FspBI | CTAG | 1 cut(s) | 75 |
| GluI | GCNGC | 2 cut(s) | 429, 534 |
| HaeIII | GGCC | 1 cut(s) | 339 |
| HapII | CCGG | 1 cut(s) | 473 |
| HgaI | GACGC | 1 cut(s) | 134 |
| HinfI | GANTC | 1 cut(s) | 307 |
| HpaII | CCGG | 1 cut(s) | 473 |
| Hpy166II | GTNNAC | 1 cut(s) | 483 |
| Hpy188I | TCNGA | 4 cut(s) | 177, 201, 251, 262 |
| Hpy188III | TCNNGA | 1 cut(s) | 75 |
| Hpy8I | GTNNAC | 1 cut(s) | 483 |
| HpyAV | CCTTC | 2 cut(s) | 112, 388 |
| HpyCH4III | ACNGT | 1 cut(s) | 530 |
| HpyCH4V | TGCA | 3 cut(s) | 374, 513, 533 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 142, 151, 428 |
| HpyF3I | CTNAG | 2 cut(s) | 174, 423 |
| Kzo9I | GATC | 1 cut(s) | 177 |
| LpnPI | CCDG | 6 cut(s) | 98, 103, 128, 320, 347, 486 |
| Lsp1109I | GCAGC | 2 cut(s) | 440, 545 |
| LweI | GCATC | 1 cut(s) | 100 |
| MaeI | CTAG | 1 cut(s) | 75 |
| MaeIII | GTNAC | 1 cut(s) | 543 |
| MalI | GATC | 1 cut(s) | 179 |
| MboI | GATC | 1 cut(s) | 177 |
| MboII | GAAGA | 2 cut(s) | 337, 350 |
| MfeI | CAATTG | 1 cut(s) | 289 |
| MflI | RGATCY | 1 cut(s) | 177 |
| MluCI | AATT | 3 cut(s) | 252, 289, 341 |
| MnlI | CCTC | 7 cut(s) | 36, 39, 100, 159, 230, 418, 452 |
| MroXI | GAANNNNTTC | 3 cut(s) | 122, 135, 256 |
| MspI | CCGG | 1 cut(s) | 473 |
| MspR9I | CCNGG | 1 cut(s) | 335 |
| MunI | CAATTG | 1 cut(s) | 289 |
| MvaI | CCWGG | 1 cut(s) | 335 |
| MvnI | CGCG | 1 cut(s) | 145 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 142, 151, 428 |
| NdeII | GATC | 1 cut(s) | 177 |
| PdmI | GAANNNNTTC | 3 cut(s) | 122, 135, 256 |
| PfeI | GAWTC | 1 cut(s) | 307 |
| PkrI | GCNGC | 2 cut(s) | 430, 535 |
| Psp6I | CCWGG | 1 cut(s) | 333 |
| PspGI | CCWGG | 1 cut(s) | 333 |
| PspPI | GGNCC | 1 cut(s) | 337 |
| PsuI | RGATCY | 1 cut(s) | 177 |
| SatI | GCNGC | 2 cut(s) | 429, 534 |
| Sau3AI | GATC | 1 cut(s) | 177 |
| Sau96I | GGNCC | 1 cut(s) | 337 |
| ScrFI | CCNGG | 1 cut(s) | 335 |
| SetI | ASST | 4 cut(s) | 123, 380, 463, 538 |
| SfaNI | GCATC | 1 cut(s) | 100 |
| Sse9I | AATT | 3 cut(s) | 252, 289, 341 |
| SspMI | CTAG | 1 cut(s) | 75 |
| StyD4I | CCNGG | 1 cut(s) | 333 |
| TaaI | ACNGT | 1 cut(s) | 530 |
| TaqI | TCGA | 1 cut(s) | 126 |
| TasI | AATT | 3 cut(s) | 252, 289, 341 |
| TfiI | GAWTC | 1 cut(s) | 307 |
| TscAI | CASTG | 1 cut(s) | 535 |
| TseI | GCWGC | 2 cut(s) | 428, 533 |
| TspDTI | ATGAA | 3 cut(s) | 35, 144, 201 |
| TspGWI | ACGGA | 1 cut(s) | 155 |
| TspRI | CASTG | 1 cut(s) | 535 |
| XbaI | TCTAGA | 1 cut(s) | 74 |
| XmnI | GAANNNNTTC | 3 cut(s) | 122, 135, 256 |
| XspI | CTAG | 1 cut(s) | 75 |