Pentatricopeptide repeat-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PPR_1 | PF12854 | 5 - 37 | 3.5e-08 | PPR repeat |
| PPR_2 | PF13041 | 8 - 45 | 4.8e-07 | PPR repeat family |
| PPR_3 | PF13812 | 8 - 53 | 7.5e-06 | Pentatricopeptide repeat domain |
| TPR_24 | PF23276 | 29 - 139 | 1.1e-06 | Fungal tetratrico peptide repeats |
| PPR_1 | PF12854 | 41 - 68 | 3.6e-07 | PPR repeat |
| PPR_2 | PF13041 | 44 - 92 | 4.3e-18 | PPR repeat family |
| PPR | PF01535 | 46 - 76 | 5.9e-06 | PPR repeat |
| PPR_3 | PF13812 | 71 - 123 | 1.5e-06 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 74 - 106 | 3.1e-12 | PPR repeat |
| PPR | PF01535 | 82 - 111 | 7.4e-09 | PPR repeat |
| PPR_2 | PF13041 | 86 - 126 | 2e-10 | PPR repeat family |
| PPR_2 | PF13041 | 117 - 158 | 3.1e-06 | PPR repeat family |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 189 |
| AclWI | GGATC | 1 cut(s) | 491 |
| AcsI | RAATTY | 1 cut(s) | 92 |
| AgsI | TTSAA | 4 cut(s) | 158, 185, 293, 416 |
| AluBI | AGCT | 4 cut(s) | 19, 173, 304, 514 |
| AluI | AGCT | 4 cut(s) | 19, 173, 304, 514 |
| Alw26I | GTCTC | 1 cut(s) | 383 |
| AlwI | GGATC | 1 cut(s) | 491 |
| AoxI | GGCC | 2 cut(s) | 55, 265 |
| ApeKI | GCWGC | 2 cut(s) | 304, 511 |
| ApoI | RAATTY | 1 cut(s) | 92 |
| AspS9I | GGNCC | 2 cut(s) | 265, 348 |
| AsuII | TTCGAA | 1 cut(s) | 31 |
| AvaII | GGWCC | 1 cut(s) | 348 |
| BbvI | GCAGC | 2 cut(s) | 291, 523 |
| BccI | CCATC | 3 cut(s) | 47, 100, 335 |
| BceAI | ACGGC | 1 cut(s) | 99 |
| BcoDI | GTCTC | 1 cut(s) | 383 |
| BfaI | CTAG | 1 cut(s) | 5 |
| BfmI | CTRYAG | 1 cut(s) | 441 |
| BglII | AGATCT | 1 cut(s) | 196 |
| BisI | GCNGC | 2 cut(s) | 305, 512 |
| BlsI | GCNGC | 2 cut(s) | 306, 513 |
| Bme18I | GGWCC | 1 cut(s) | 348 |
| BmgT120I | GGNCC | 2 cut(s) | 265, 348 |
| BmsI | GCATC | 2 cut(s) | 436, 458 |
| BpmI | CTGGAG | 1 cut(s) | 321 |
| Bpu14I | TTCGAA | 1 cut(s) | 31 |
| BpuEI | CTTGAG | 1 cut(s) | 446 |
| BsaJI | CCNNGG | 1 cut(s) | 367 |
| Bse118I | RCCGGY | 1 cut(s) | 69 |
| BseDI | CCNNGG | 1 cut(s) | 367 |
| BseGI | GGATG | 1 cut(s) | 335 |
| BseMII | CTCAG | 1 cut(s) | 299 |
| BseXI | GCAGC | 2 cut(s) | 291, 523 |
| BshFI | GGCC | 2 cut(s) | 57, 267 |
| BsiSI | CCGG | 2 cut(s) | 70, 500 |
| BsmAI | GTCTC | 1 cut(s) | 383 |
| BsnI | GGCC | 2 cut(s) | 57, 267 |
| Bsp119I | TTCGAA | 1 cut(s) | 31 |
| Bsp143I | GATC | 2 cut(s) | 196, 496 |
| BspACI | CCGC | 1 cut(s) | 189 |
| BspANI | GGCC | 2 cut(s) | 57, 267 |
| BspCNI | CTCAG | 1 cut(s) | 300 |
| BspHI | TCATGA | 1 cut(s) | 527 |
| BspMAI | CTGCAG | 1 cut(s) | 445 |
| BspPI | GGATC | 1 cut(s) | 491 |
| BspT104I | TTCGAA | 1 cut(s) | 31 |
| BsrFI | RCCGGY | 1 cut(s) | 69 |
| BssAI | RCCGGY | 1 cut(s) | 69 |
| BssECI | CCNNGG | 1 cut(s) | 367 |
| BssMI | GATC | 2 cut(s) | 196, 496 |
| Bst4CI | ACNGT | 1 cut(s) | 43 |
| BstBI | TTCGAA | 1 cut(s) | 31 |
| BstDEI | CTNAG | 1 cut(s) | 308 |
| BstF5I | GGATG | 1 cut(s) | 335 |
| BstKTI | GATC | 2 cut(s) | 199, 499 |
| BstMAI | GTCTC | 1 cut(s) | 383 |
| BstMBI | GATC | 2 cut(s) | 196, 496 |
| BstSFI | CTRYAG | 1 cut(s) | 441 |
| BstV1I | GCAGC | 2 cut(s) | 291, 523 |
| BstX2I | RGATCY | 2 cut(s) | 196, 496 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 345 |
| BstYI | RGATCY | 2 cut(s) | 196, 496 |
| BsuRI | GGCC | 2 cut(s) | 57, 267 |
| BtsCI | GGATG | 1 cut(s) | 335 |
| BtsIMutI | CAGTG | 1 cut(s) | 39 |
| CciI | TCATGA | 1 cut(s) | 527 |
| Cfr10I | RCCGGY | 1 cut(s) | 69 |
| Cfr13I | GGNCC | 2 cut(s) | 265, 348 |
| CviAII | CATG | 3 cut(s) | 278, 396, 528 |
| DdeI | CTNAG | 1 cut(s) | 308 |
| DpnI | GATC | 2 cut(s) | 198, 498 |
| DpnII | GATC | 2 cut(s) | 196, 496 |
| Eco47I | GGWCC | 1 cut(s) | 348 |
| EcoO109I | RGGNCCY | 1 cut(s) | 265 |
| EcoT22I | ATGCAT | 1 cut(s) | 451 |
| FaeI | CATG | 3 cut(s) | 281, 399, 531 |
| FaiI | YATR | 7 cut(s) | 247, 254, 279, 397, 404, 491, 529 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 111, 143, 408, 440 |
| FatI | CATG | 3 cut(s) | 277, 395, 527 |
| Fnu4HI | GCNGC | 2 cut(s) | 305, 512 |
| FokI | GGATG | 1 cut(s) | 342 |
| Fsp4HI | GCNGC | 2 cut(s) | 305, 512 |
| FspBI | CTAG | 1 cut(s) | 5 |
| GluI | GCNGC | 2 cut(s) | 305, 512 |
| GsuI | CTGGAG | 1 cut(s) | 321 |
| HaeIII | GGCC | 2 cut(s) | 57, 267 |
| HapII | CCGG | 2 cut(s) | 70, 500 |
| Hin1II | CATG | 3 cut(s) | 281, 399, 531 |
| HinfI | GANTC | 3 cut(s) | 185, 259, 524 |
| HpaII | CCGG | 2 cut(s) | 70, 500 |
| Hpy166II | GTNNAC | 2 cut(s) | 14, 142 |
| Hpy188I | TCNGA | 1 cut(s) | 368 |
| Hpy188III | TCNNGA | 3 cut(s) | 338, 416, 528 |
| Hpy8I | GTNNAC | 2 cut(s) | 14, 142 |
| HpyAV | CCTTC | 4 cut(s) | 38, 152, 320, 478 |
| HpyCH4III | ACNGT | 1 cut(s) | 43 |
| HpyCH4V | TGCA | 4 cut(s) | 168, 443, 449, 511 |
| HpyF3I | CTNAG | 1 cut(s) | 308 |
| Hsp92II | CATG | 3 cut(s) | 281, 399, 531 |
| Kzo9I | GATC | 2 cut(s) | 196, 496 |
| LpnPI | CCDG | 7 cut(s) | 71, 83, 159, 246, 248, 351, 513 |
| Lsp1109I | GCAGC | 2 cut(s) | 291, 523 |
| LweI | GCATC | 2 cut(s) | 436, 458 |
| MaeI | CTAG | 1 cut(s) | 5 |
| MaeIII | GTNAC | 1 cut(s) | 62 |
| MalI | GATC | 2 cut(s) | 198, 498 |
| MboI | GATC | 2 cut(s) | 196, 496 |
| MflI | RGATCY | 2 cut(s) | 196, 496 |
| MluCI | AATT | 5 cut(s) | 92, 180, 288, 411, 461 |
| MmeI | TCCRAC | 1 cut(s) | 326 |
| MnlI | CCTC | 3 cut(s) | 314, 362, 423 |
| Mph1103I | ATGCAT | 1 cut(s) | 451 |
| MseI | TTAA | 6 cut(s) | 99, 129, 284, 354, 377, 518 |
| MslI | CAYNNNNRTG | 1 cut(s) | 254 |
| MspA1I | CMGCKG | 1 cut(s) | 514 |
| MspI | CCGG | 2 cut(s) | 70, 500 |
| NdeII | GATC | 2 cut(s) | 196, 496 |
| NlaIII | CATG | 3 cut(s) | 281, 399, 531 |
| NsiI | ATGCAT | 1 cut(s) | 451 |
| NspV | TTCGAA | 1 cut(s) | 31 |
| PagI | TCATGA | 1 cut(s) | 527 |
| PfeI | GAWTC | 3 cut(s) | 185, 259, 524 |
| PkrI | GCNGC | 2 cut(s) | 306, 513 |
| PspPI | GGNCC | 2 cut(s) | 265, 348 |
| PstI | CTGCAG | 1 cut(s) | 445 |
| PsuI | RGATCY | 2 cut(s) | 196, 496 |
| PvuII | CAGCTG | 1 cut(s) | 514 |
| RseI | CAYNNNNRTG | 1 cut(s) | 254 |
| SaqAI | TTAA | 6 cut(s) | 99, 129, 284, 354, 377, 518 |
| SatI | GCNGC | 2 cut(s) | 305, 512 |
| Sau3AI | GATC | 2 cut(s) | 196, 496 |
| Sau96I | GGNCC | 2 cut(s) | 265, 348 |
| SetI | ASST | 7 cut(s) | 10, 21, 30, 175, 306, 353, 516 |
| SfaNI | GCATC | 2 cut(s) | 436, 458 |
| SfcI | CTRYAG | 1 cut(s) | 441 |
| SfuI | TTCGAA | 1 cut(s) | 31 |
| SinI | GGWCC | 1 cut(s) | 348 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 254 |
| SmlI | CTYRAG | 1 cut(s) | 425 |
| SmoI | CTYRAG | 1 cut(s) | 425 |
| Sse9I | AATT | 5 cut(s) | 92, 180, 288, 411, 461 |
| SsiI | CCGC | 1 cut(s) | 189 |
| SspMI | CTAG | 1 cut(s) | 5 |
| TaaI | ACNGT | 1 cut(s) | 43 |
| TaqI | TCGA | 2 cut(s) | 31, 482 |
| TasI | AATT | 5 cut(s) | 92, 180, 288, 411, 461 |
| TfiI | GAWTC | 3 cut(s) | 185, 259, 524 |
| Tru1I | TTAA | 6 cut(s) | 99, 129, 284, 354, 377, 518 |
| Tru9I | TTAA | 6 cut(s) | 99, 129, 284, 354, 377, 518 |
| TscAI | CASTG | 1 cut(s) | 46 |
| TseI | GCWGC | 2 cut(s) | 304, 511 |
| TspDTI | ATGAA | 2 cut(s) | 419, 516 |
| TspRI | CASTG | 1 cut(s) | 46 |
| VpaK11BI | GGWCC | 1 cut(s) | 348 |
| XapI | RAATTY | 1 cut(s) | 92 |
| XspI | CTAG | 1 cut(s) | 5 |
| Zsp2I | ATGCAT | 1 cut(s) | 451 |