Pentatricopeptide repeat-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PPR_2 | PF13041 | 19 - 67 | 4.7e-17 | PPR repeat family |
| PPR_3 | PF13812 | 42 - 95 | 1.5e-06 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 49 - 72 | 5.7e-11 | PPR repeat |
| PPR_2 | PF13041 | 73 - 99 | 6.5e-07 | PPR repeat family |
| PPR_3 | PF13812 | 73 - 130 | 1.7e-08 | Pentatricopeptide repeat domain |
| PPR_2 | PF13041 | 97 - 133 | 6.7e-08 | PPR repeat family |
| PPR_3 | PF13812 | 109 - 165 | 2.3e-07 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 118 - 145 | 8.4e-09 | PPR repeat |
| PPR_2 | PF13041 | 120 - 168 | 3.7e-16 | PPR repeat family |
| PPR_1 | PF12854 | 151 - 168 | 9.2e-06 | PPR repeat |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 421 |
| AccI | GTMKAC | 1 cut(s) | 311 |
| AciI | CCGC | 1 cut(s) | 438 |
| AclWI | GGATC | 3 cut(s) | 350, 363, 435 |
| AcoI | YGGCCR | 2 cut(s) | 85, 244 |
| AcuI | CTGAAG | 1 cut(s) | 443 |
| AfaI | GTAC | 1 cut(s) | 75 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 94 |
| AgsI | TTSAA | 5 cut(s) | 263, 323, 332, 389, 416 |
| AluBI | AGCT | 1 cut(s) | 239 |
| AluI | AGCT | 1 cut(s) | 239 |
| AlwI | GGATC | 3 cut(s) | 350, 363, 435 |
| AoxI | GGCC | 2 cut(s) | 85, 244 |
| AspLEI | GCGC | 1 cut(s) | 422 |
| AsuHPI | GGTGA | 1 cut(s) | 109 |
| BalI | TGGCCA | 1 cut(s) | 246 |
| BamHI | GGATCC | 1 cut(s) | 355 |
| BccI | CCATC | 3 cut(s) | 43, 182, 278 |
| BmiI | GGNNCC | 2 cut(s) | 156, 357 |
| BmsI | GCATC | 2 cut(s) | 111, 222 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 94 |
| Bse118I | RCCGGY | 1 cut(s) | 83 |
| Bse1I | ACTGG | 2 cut(s) | 156, 285 |
| BseGI | GGATG | 2 cut(s) | 10, 289 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 94 |
| BseNI | ACTGG | 2 cut(s) | 156, 285 |
| BshFI | GGCC | 2 cut(s) | 87, 246 |
| BsiSI | CCGG | 1 cut(s) | 84 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 94 |
| BsmI | GAATGC | 1 cut(s) | 422 |
| BsnI | GGCC | 2 cut(s) | 87, 246 |
| Bsp143I | GATC | 4 cut(s) | 25, 109, 355, 427 |
| BspACI | CCGC | 1 cut(s) | 438 |
| BspANI | GGCC | 2 cut(s) | 87, 246 |
| BspLI | GGNNCC | 2 cut(s) | 156, 357 |
| BspPI | GGATC | 3 cut(s) | 350, 363, 435 |
| BsrFI | RCCGGY | 1 cut(s) | 83 |
| BsrI | ACTGG | 2 cut(s) | 156, 285 |
| BssAI | RCCGGY | 1 cut(s) | 83 |
| BssMI | GATC | 4 cut(s) | 25, 109, 355, 427 |
| Bst4CI | ACNGT | 1 cut(s) | 309 |
| Bst6I | CTCTTC | 1 cut(s) | 327 |
| BstC8I | GCNNGC | 2 cut(s) | 200, 237 |
| BstF5I | GGATG | 2 cut(s) | 10, 289 |
| BstHHI | GCGC | 1 cut(s) | 422 |
| BstKTI | GATC | 4 cut(s) | 28, 112, 358, 430 |
| BstMBI | GATC | 4 cut(s) | 25, 109, 355, 427 |
| BstX2I | RGATCY | 2 cut(s) | 355, 427 |
| BstYI | RGATCY | 2 cut(s) | 355, 427 |
| BsuRI | GGCC | 2 cut(s) | 87, 246 |
| BtsCI | GGATG | 2 cut(s) | 10, 289 |
| BtsI | GCAGTG | 1 cut(s) | 123 |
| BtsIMutI | CAGTG | 1 cut(s) | 123 |
| Cac8I | GCNNGC | 2 cut(s) | 200, 237 |
| CfoI | GCGC | 1 cut(s) | 422 |
| Cfr10I | RCCGGY | 1 cut(s) | 83 |
| Csp6I | GTAC | 1 cut(s) | 74 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 348, 383 |
| CviJI | RGCY | 5 cut(s) | 53, 87, 239, 246, 463 |
| CviKI_1 | RGCY | 5 cut(s) | 53, 87, 239, 246, 463 |
| CviQI | GTAC | 1 cut(s) | 74 |
| DpnI | GATC | 4 cut(s) | 27, 111, 357, 429 |
| DpnII | GATC | 4 cut(s) | 25, 109, 355, 427 |
| EaeI | YGGCCR | 2 cut(s) | 85, 244 |
| Eam1104I | CTCTTC | 1 cut(s) | 327 |
| EarI | CTCTTC | 1 cut(s) | 327 |
| Eco57I | CTGAAG | 1 cut(s) | 443 |
| FaiI | YATR | 7 cut(s) | 63, 107, 174, 270, 275, 401, 485 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 416, 448 |
| FblI | GTMKAC | 1 cut(s) | 311 |
| FokI | GGATG | 2 cut(s) | 17, 296 |
| FspI | TGCGCA | 1 cut(s) | 421 |
| GlaI | GCGC | 1 cut(s) | 421 |
| HaeIII | GGCC | 2 cut(s) | 87, 246 |
| HapII | CCGG | 1 cut(s) | 84 |
| HhaI | GCGC | 1 cut(s) | 422 |
| Hin6I | GCGC | 1 cut(s) | 420 |
| HinP1I | GCGC | 1 cut(s) | 420 |
| HindIII | AAGCTT | 1 cut(s) | 237 |
| HpaII | CCGG | 1 cut(s) | 84 |
| HphI | GGTGA | 1 cut(s) | 109 |
| Hpy166II | GTNNAC | 3 cut(s) | 312, 373, 497 |
| Hpy188III | TCNNGA | 3 cut(s) | 131, 158, 472 |
| Hpy8I | GTNNAC | 3 cut(s) | 312, 373, 497 |
| HpyAV | CCTTC | 1 cut(s) | 383 |
| HpyCH4III | ACNGT | 1 cut(s) | 309 |
| HpyCH4IV | ACGT | 1 cut(s) | 72 |
| HpyCH4V | TGCA | 3 cut(s) | 198, 235, 399 |
| HpySE526I | ACGT | 1 cut(s) | 72 |
| HspAI | GCGC | 1 cut(s) | 420 |
| Kzo9I | GATC | 4 cut(s) | 25, 109, 355, 427 |
| LpnPI | CCDG | 9 cut(s) | 97, 98, 116, 126, 137, 171, 188, 266, 457 |
| LweI | GCATC | 2 cut(s) | 111, 222 |
| MaeII | ACGT | 1 cut(s) | 72 |
| MaeIII | GTNAC | 2 cut(s) | 65, 166 |
| MalI | GATC | 4 cut(s) | 27, 111, 357, 429 |
| MboI | GATC | 4 cut(s) | 25, 109, 355, 427 |
| MboII | GAAGA | 1 cut(s) | 344 |
| MflI | RGATCY | 2 cut(s) | 355, 427 |
| MlsI | TGGCCA | 1 cut(s) | 246 |
| MluCI | AATT | 3 cut(s) | 318, 323, 350 |
| MluNI | TGGCCA | 1 cut(s) | 246 |
| MnlI | CCTC | 1 cut(s) | 140 |
| Mox20I | TGGCCA | 1 cut(s) | 246 |
| MscI | TGGCCA | 1 cut(s) | 246 |
| MseI | TTAA | 2 cut(s) | 93, 505 |
| Msp20I | TGGCCA | 1 cut(s) | 246 |
| MspI | CCGG | 1 cut(s) | 84 |
| Mva1269I | GAATGC | 1 cut(s) | 422 |
| NdeII | GATC | 4 cut(s) | 25, 109, 355, 427 |
| NlaIV | GGNNCC | 2 cut(s) | 156, 357 |
| NsbI | TGCGCA | 1 cut(s) | 421 |
| PctI | GAATGC | 1 cut(s) | 422 |
| PspN4I | GGNNCC | 2 cut(s) | 156, 357 |
| PsuI | RGATCY | 2 cut(s) | 355, 427 |
| RsaI | GTAC | 1 cut(s) | 75 |
| RsaNI | GTAC | 1 cut(s) | 74 |
| SaqAI | TTAA | 2 cut(s) | 93, 505 |
| Sau3AI | GATC | 4 cut(s) | 25, 109, 355, 427 |
| SetI | ASST | 4 cut(s) | 75, 99, 241, 394 |
| SfaNI | GCATC | 2 cut(s) | 111, 222 |
| Sse9I | AATT | 3 cut(s) | 318, 323, 350 |
| SsiI | CCGC | 1 cut(s) | 438 |
| SspI | AATATT | 2 cut(s) | 364, 379 |
| TaaI | ACNGT | 1 cut(s) | 309 |
| TaiI | ACGT | 1 cut(s) | 75 |
| TasI | AATT | 3 cut(s) | 318, 323, 350 |
| Tru1I | TTAA | 2 cut(s) | 93, 505 |
| Tru9I | TTAA | 2 cut(s) | 93, 505 |
| TscAI | CASTG | 1 cut(s) | 123 |
| TspDTI | ATGAA | 1 cut(s) | 353 |
| TspGWI | ACGGA | 1 cut(s) | 329 |
| TspRI | CASTG | 1 cut(s) | 123 |
| XmiI | GTMKAC | 1 cut(s) | 311 |