Pentatricopeptide repeat-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PPR_1 | PF12854 | 5 - 37 | 3.4e-14 | PPR repeat |
| PPR_2 | PF13041 | 8 - 57 | 1.1e-17 | PPR repeat family |
| TPR_24 | PF23276 | 10 - 103 | 4.2e-10 | Fungal tetratrico peptide repeats |
| PPR | PF01535 | 11 - 41 | 4.8e-09 | PPR repeat |
| PPR_1 | PF12854 | 40 - 71 | 1.8e-06 | PPR repeat |
| PPR_2 | PF13041 | 51 - 91 | 3.9e-07 | PPR repeat family |
| PPR_3 | PF13812 | 67 - 123 | 6.3e-07 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 76 - 103 | 2.2e-08 | PPR repeat |
| PPR_2 | PF13041 | 79 - 127 | 4e-16 | PPR repeat family |
| PPR_1 | PF12854 | 109 - 141 | 1.9e-12 | PPR repeat |
| PPR | PF01535 | 117 - 146 | 3.6e-09 | PPR repeat |
| PPR_2 | PF13041 | 119 - 161 | 5e-12 | PPR repeat family |
| PPR_2 | PF13041 | 151 - 191 | 2.9e-06 | PPR repeat family |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 346, 401 |
| AcsI | RAATTY | 1 cut(s) | 285 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 226 |
| AgsI | TTSAA | 5 cut(s) | 80, 137, 263, 398, 521 |
| AhlI | ACTAGT | 1 cut(s) | 16 |
| AluBI | AGCT | 5 cut(s) | 191, 199, 211, 278, 604 |
| AluI | AGCT | 5 cut(s) | 191, 199, 211, 278, 604 |
| Alw26I | GTCTC | 1 cut(s) | 488 |
| AoxI | GGCC | 2 cut(s) | 118, 160 |
| ApeKI | GCWGC | 3 cut(s) | 188, 199, 604 |
| ApoI | RAATTY | 1 cut(s) | 285 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 18 |
| BbvI | GCAGC | 3 cut(s) | 186, 200, 591 |
| BccI | CCATC | 3 cut(s) | 47, 152, 583 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 586, 620 |
| BciVI | GTATCC | 1 cut(s) | 586 |
| BcoDI | GTCTC | 1 cut(s) | 488 |
| BcuI | ACTAGT | 1 cut(s) | 16 |
| BfaI | CTAG | 1 cut(s) | 17 |
| BfmI | CTRYAG | 3 cut(s) | 186, 192, 546 |
| BfuI | GTATCC | 1 cut(s) | 586 |
| BglII | AGATCT | 1 cut(s) | 301 |
| BisI | GCNGC | 3 cut(s) | 189, 200, 605 |
| BlsI | GCNGC | 3 cut(s) | 190, 201, 606 |
| BmsI | GCATC | 4 cut(s) | 96, 425, 541, 563 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 591, 623 |
| BpmI | CTGGAG | 1 cut(s) | 300 |
| BpuEI | CTTGAG | 1 cut(s) | 551 |
| BsaJI | CCNNGG | 1 cut(s) | 472 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 226 |
| Bse1I | ACTGG | 1 cut(s) | 231 |
| BseDI | CCNNGG | 1 cut(s) | 472 |
| BseGI | GGATG | 1 cut(s) | 440 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 226 |
| BseMII | CTCAG | 2 cut(s) | 93, 427 |
| BseNI | ACTGG | 1 cut(s) | 231 |
| BseXI | GCAGC | 3 cut(s) | 186, 200, 591 |
| BshFI | GGCC | 2 cut(s) | 120, 162 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 226 |
| BsmAI | GTCTC | 1 cut(s) | 488 |
| BsnI | GGCC | 2 cut(s) | 120, 162 |
| Bsp143I | GATC | 1 cut(s) | 301 |
| BspACI | CCGC | 2 cut(s) | 346, 401 |
| BspANI | GGCC | 2 cut(s) | 120, 162 |
| BspCNI | CTCAG | 2 cut(s) | 94, 426 |
| BspMAI | CTGCAG | 2 cut(s) | 190, 550 |
| BsrI | ACTGG | 1 cut(s) | 231 |
| BssECI | CCNNGG | 1 cut(s) | 472 |
| BssMI | GATC | 1 cut(s) | 301 |
| Bst4CI | ACNGT | 1 cut(s) | 251 |
| Bst6I | CTCTTC | 1 cut(s) | 311 |
| BstC8I | GCNNGC | 1 cut(s) | 122 |
| BstDEI | CTNAG | 3 cut(s) | 102, 203, 413 |
| BstF5I | GGATG | 1 cut(s) | 440 |
| BstKTI | GATC | 1 cut(s) | 304 |
| BstMAI | GTCTC | 1 cut(s) | 488 |
| BstMBI | GATC | 1 cut(s) | 301 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 208, 610 |
| BstSFI | CTRYAG | 3 cut(s) | 186, 192, 546 |
| BstV1I | GCAGC | 3 cut(s) | 186, 200, 591 |
| BstX2I | RGATCY | 1 cut(s) | 301 |
| BstYI | RGATCY | 1 cut(s) | 301 |
| BsuI | GTATCC | 1 cut(s) | 586 |
| BsuRI | GGCC | 2 cut(s) | 120, 162 |
| BtsCI | GGATG | 1 cut(s) | 440 |
| Cac8I | GCNNGC | 1 cut(s) | 122 |
| CviAII | CATG | 2 cut(s) | 383, 610 |
| CviJI | RGCY | 9 cut(s) | 120, 162, 191, 199, 211, 218, 278, 506, 604 |
| CviKI_1 | RGCY | 9 cut(s) | 120, 162, 191, 199, 211, 218, 278, 506, 604 |
| DdeI | CTNAG | 3 cut(s) | 102, 203, 413 |
| DpnI | GATC | 1 cut(s) | 303 |
| DpnII | GATC | 1 cut(s) | 301 |
| Eam1104I | CTCTTC | 1 cut(s) | 311 |
| EarI | CTCTTC | 1 cut(s) | 311 |
| EcoT22I | ATGCAT | 2 cut(s) | 556, 615 |
| FaeI | CATG | 2 cut(s) | 386, 613 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 513, 545 |
| FatI | CATG | 2 cut(s) | 382, 609 |
| FauNDI | CATATG | 1 cut(s) | 615 |
| Fnu4HI | GCNGC | 3 cut(s) | 189, 200, 605 |
| FokI | GGATG | 1 cut(s) | 447 |
| Fsp4HI | GCNGC | 3 cut(s) | 189, 200, 605 |
| FspBI | CTAG | 1 cut(s) | 17 |
| GluI | GCNGC | 3 cut(s) | 189, 200, 605 |
| GsuI | CTGGAG | 1 cut(s) | 300 |
| HaeIII | GGCC | 2 cut(s) | 120, 162 |
| Hin1II | CATG | 2 cut(s) | 386, 613 |
| HinfI | GANTC | 1 cut(s) | 330 |
| Hpy166II | GTNNAC | 1 cut(s) | 371 |
| Hpy188I | TCNGA | 3 cut(s) | 103, 416, 473 |
| Hpy188III | TCNNGA | 3 cut(s) | 80, 128, 521 |
| Hpy8I | GTNNAC | 1 cut(s) | 371 |
| HpyAV | CCTTC | 1 cut(s) | 257 |
| HpyCH4III | ACNGT | 1 cut(s) | 251 |
| HpyCH4V | TGCA | 9 cut(s) | 63, 109, 188, 273, 296, 453, 548, 554, 613 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 208, 610 |
| HpyF3I | CTNAG | 3 cut(s) | 102, 203, 413 |
| Hsp92II | CATG | 2 cut(s) | 386, 613 |
| Kzo9I | GATC | 1 cut(s) | 301 |
| LpnPI | CCDG | 7 cut(s) | 54, 134, 141, 197, 212, 264, 351 |
| Lsp1109I | GCAGC | 3 cut(s) | 186, 200, 591 |
| LweI | GCATC | 4 cut(s) | 96, 425, 541, 563 |
| MaeI | CTAG | 1 cut(s) | 17 |
| MalI | GATC | 1 cut(s) | 303 |
| MboI | GATC | 1 cut(s) | 301 |
| MboII | GAAGA | 1 cut(s) | 298 |
| MflI | RGATCY | 1 cut(s) | 301 |
| MluCI | AATT | 6 cut(s) | 30, 75, 285, 393, 513, 566 |
| MlyI | GAGTC | 1 cut(s) | 324 |
| MmeI | TCCRAC | 1 cut(s) | 358 |
| MnlI | CCTC | 4 cut(s) | 419, 467, 528, 612 |
| Mph1103I | ATGCAT | 2 cut(s) | 556, 615 |
| MroXI | GAANNNNTTC | 1 cut(s) | 18 |
| MseI | TTAA | 2 cut(s) | 39, 389 |
| MslI | CAYNNNNRTG | 1 cut(s) | 614 |
| MspA1I | CMGCKG | 1 cut(s) | 191 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 208, 610 |
| NdeI | CATATG | 1 cut(s) | 615 |
| NdeII | GATC | 1 cut(s) | 301 |
| NlaIII | CATG | 2 cut(s) | 386, 613 |
| NsiI | ATGCAT | 2 cut(s) | 556, 615 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 593 |
| PdmI | GAANNNNTTC | 1 cut(s) | 18 |
| PflFI | GACNNNGTC | 1 cut(s) | 375 |
| PkrI | GCNGC | 3 cut(s) | 190, 201, 606 |
| PleI | GAGTC | 1 cut(s) | 324 |
| PpsI | GAGTC | 1 cut(s) | 324 |
| PstI | CTGCAG | 2 cut(s) | 190, 550 |
| PsuI | RGATCY | 1 cut(s) | 301 |
| PsyI | GACNNNGTC | 1 cut(s) | 375 |
| PvuII | CAGCTG | 1 cut(s) | 191 |
| RseI | CAYNNNNRTG | 1 cut(s) | 614 |
| SaqAI | TTAA | 2 cut(s) | 39, 389 |
| SatI | GCNGC | 3 cut(s) | 189, 200, 605 |
| Sau3AI | GATC | 1 cut(s) | 301 |
| SchI | GAGTC | 1 cut(s) | 324 |
| SfaNI | GCATC | 4 cut(s) | 96, 425, 541, 563 |
| SfcI | CTRYAG | 3 cut(s) | 186, 192, 546 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 614 |
| SmlI | CTYRAG | 1 cut(s) | 530 |
| SmoI | CTYRAG | 1 cut(s) | 530 |
| SpeI | ACTAGT | 1 cut(s) | 16 |
| Sse9I | AATT | 6 cut(s) | 30, 75, 285, 393, 513, 566 |
| SsiI | CCGC | 2 cut(s) | 346, 401 |
| SspMI | CTAG | 1 cut(s) | 17 |
| TaaI | ACNGT | 1 cut(s) | 251 |
| TaqI | TCGA | 2 cut(s) | 234, 587 |
| TasI | AATT | 6 cut(s) | 30, 75, 285, 393, 513, 566 |
| Tru1I | TTAA | 2 cut(s) | 39, 389 |
| Tru9I | TTAA | 2 cut(s) | 39, 389 |
| TseI | GCWGC | 3 cut(s) | 188, 199, 604 |
| TspDTI | ATGAA | 1 cut(s) | 629 |
| TspGWI | ACGGA | 1 cut(s) | 578 |
| Tth111I | GACNNNGTC | 1 cut(s) | 375 |
| XapI | RAATTY | 1 cut(s) | 285 |
| XmnI | GAANNNNTTC | 1 cut(s) | 18 |
| XspI | CTAG | 1 cut(s) | 17 |
| Zsp2I | ATGCAT | 2 cut(s) | 556, 615 |