Pentatricopeptide repeat-containing protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 50 |
| Acc36I | ACCTGC | 2 cut(s) | 50, 428 |
| AciI | CCGC | 2 cut(s) | 274, 512 |
| AcoI | YGGCCR | 1 cut(s) | 513 |
| AcsI | RAATTY | 2 cut(s) | 295, 414 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 354, 457 |
| AgsI | TTSAA | 5 cut(s) | 229, 295, 366, 469, 692 |
| AhlI | ACTAGT | 1 cut(s) | 607 |
| AluBI | AGCT | 3 cut(s) | 46, 199, 725 |
| AluI | AGCT | 3 cut(s) | 46, 199, 725 |
| Alw21I | GWGCWC | 1 cut(s) | 53 |
| Alw44I | GTGCAC | 1 cut(s) | 49 |
| AoxI | GGCC | 2 cut(s) | 513, 709 |
| ApaLI | GTGCAC | 1 cut(s) | 49 |
| ApeKI | GCWGC | 4 cut(s) | 251, 271, 407, 725 |
| ApoI | RAATTY | 2 cut(s) | 295, 414 |
| AseI | ATTAAT | 1 cut(s) | 245 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 629 |
| AsuC2I | CCSGG | 1 cut(s) | 355 |
| AsuHPI | GGTGA | 2 cut(s) | 74, 84 |
| BaeGI | GKGCMC | 2 cut(s) | 53, 262 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 594, 627 |
| BbsI | GAAGAC | 1 cut(s) | 236 |
| Bbv12I | GWGCWC | 1 cut(s) | 53 |
| BbvI | GCAGC | 4 cut(s) | 238, 258, 394, 712 |
| BccI | CCATC | 1 cut(s) | 529 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 182, 216 |
| BciVI | GTATCC | 1 cut(s) | 595 |
| BcnI | CCSGG | 1 cut(s) | 355 |
| BcuI | ACTAGT | 1 cut(s) | 607 |
| BfaI | CTAG | 1 cut(s) | 608 |
| BfmI | CTRYAG | 1 cut(s) | 571 |
| BfuAI | ACCTGC | 2 cut(s) | 50, 428 |
| BfuI | GTATCC | 1 cut(s) | 595 |
| BglII | AGATCT | 1 cut(s) | 11 |
| BisI | GCNGC | 5 cut(s) | 252, 272, 408, 513, 726 |
| BlsI | GCNGC | 5 cut(s) | 253, 273, 409, 514, 727 |
| Bme1390I | CCNGG | 1 cut(s) | 355 |
| BmiI | GGNNCC | 1 cut(s) | 37 |
| BmrFI | CCNGG | 1 cut(s) | 355 |
| BmsI | GCATC | 3 cut(s) | 120, 258, 607 |
| BpiI | GAAGAC | 1 cut(s) | 236 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 74, 106 |
| BpmI | CTGGAG | 2 cut(s) | 452, 645 |
| BpuMI | CCSGG | 1 cut(s) | 355 |
| BsaJI | CCNNGG | 2 cut(s) | 39, 353 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 354, 457 |
| Bse1I | ACTGG | 1 cut(s) | 712 |
| Bse3DI | GCAATG | 1 cut(s) | 627 |
| BseDI | CCNNGG | 2 cut(s) | 39, 353 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 354, 457 |
| BseMI | GCAATG | 1 cut(s) | 627 |
| BseMII | CTCAG | 1 cut(s) | 648 |
| BseNI | ACTGG | 1 cut(s) | 712 |
| BseRI | GAGGAG | 2 cut(s) | 48, 56 |
| BseSI | GKGCMC | 2 cut(s) | 53, 262 |
| BseXI | GCAGC | 4 cut(s) | 238, 258, 394, 712 |
| BsgI | GTGCAG | 2 cut(s) | 78, 393 |
| BshFI | GGCC | 2 cut(s) | 515, 711 |
| BsiHKAI | GWGCWC | 1 cut(s) | 53 |
| BsiSI | CCGG | 1 cut(s) | 355 |
| BslFI | GGGAC | 1 cut(s) | 291 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 354, 457 |
| BsmFI | GGGAC | 1 cut(s) | 291 |
| BsnI | GGCC | 2 cut(s) | 515, 711 |
| Bsp1286I | GDGCHC | 2 cut(s) | 53, 262 |
| Bsp143I | GATC | 2 cut(s) | 11, 204 |
| BspACI | CCGC | 2 cut(s) | 274, 512 |
| BspANI | GGCC | 2 cut(s) | 515, 711 |
| BspCNI | CTCAG | 1 cut(s) | 647 |
| BspLI | GGNNCC | 1 cut(s) | 37 |
| BspMI | ACCTGC | 2 cut(s) | 50, 428 |
| BsrDI | GCAATG | 1 cut(s) | 627 |
| BsrI | ACTGG | 1 cut(s) | 712 |
| BssECI | CCNNGG | 2 cut(s) | 39, 353 |
| BssMI | GATC | 2 cut(s) | 11, 204 |
| Bst4CI | ACNGT | 5 cut(s) | 96, 163, 509, 548, 590 |
| Bst6I | CTCTTC | 4 cut(s) | 65, 132, 207, 635 |
| BstC8I | GCNNGC | 1 cut(s) | 201 |
| BstDEI | CTNAG | 2 cut(s) | 527, 634 |
| BstKTI | GATC | 2 cut(s) | 14, 207 |
| BstMBI | GATC | 2 cut(s) | 11, 204 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 257, 708 |
| BstNSI | RCATGY | 1 cut(s) | 324 |
| BstSCI | CCNGG | 1 cut(s) | 353 |
| BstSFI | CTRYAG | 1 cut(s) | 571 |
| BstSLI | GKGCMC | 2 cut(s) | 53, 262 |
| BstV1I | GCAGC | 4 cut(s) | 238, 258, 394, 712 |
| BstV2I | GAAGAC | 1 cut(s) | 236 |
| BstX2I | RGATCY | 1 cut(s) | 11 |
| BstYI | RGATCY | 1 cut(s) | 11 |
| BsuI | GTATCC | 1 cut(s) | 595 |
| BsuRI | GGCC | 2 cut(s) | 515, 711 |
| BtsIMutI | CAGTG | 2 cut(s) | 514, 719 |
| BveI | ACCTGC | 2 cut(s) | 50, 428 |
| Cac8I | GCNNGC | 1 cut(s) | 201 |
| CviAII | CATG | 4 cut(s) | 300, 321, 493, 517 |
| DdeI | CTNAG | 2 cut(s) | 527, 634 |
| DpnI | GATC | 2 cut(s) | 13, 206 |
| DpnII | GATC | 2 cut(s) | 11, 204 |
| EaeI | YGGCCR | 1 cut(s) | 513 |
| Eam1104I | CTCTTC | 4 cut(s) | 65, 132, 207, 635 |
| EarI | CTCTTC | 4 cut(s) | 65, 132, 207, 635 |
| EcoRI | GAATTC | 1 cut(s) | 295 |
| FaeI | CATG | 4 cut(s) | 303, 324, 496, 520 |
| FaqI | GGGAC | 1 cut(s) | 291 |
| FatI | CATG | 4 cut(s) | 299, 320, 492, 516 |
| FauI | CCCGC | 1 cut(s) | 267 |
| Fnu4HI | GCNGC | 5 cut(s) | 252, 272, 408, 513, 726 |
| Fsp4HI | GCNGC | 5 cut(s) | 252, 272, 408, 513, 726 |
| FspBI | CTAG | 1 cut(s) | 608 |
| GluI | GCNGC | 5 cut(s) | 252, 272, 408, 513, 726 |
| GsuI | CTGGAG | 2 cut(s) | 452, 645 |
| HaeIII | GGCC | 2 cut(s) | 515, 711 |
| HapII | CCGG | 1 cut(s) | 355 |
| Hin1II | CATG | 4 cut(s) | 303, 324, 496, 520 |
| HincII | GTYRAC | 1 cut(s) | 172 |
| HindII | GTYRAC | 1 cut(s) | 172 |
| HindIII | AAGCTT | 1 cut(s) | 197 |
| HinfI | GANTC | 4 cut(s) | 279, 304, 339, 688 |
| HpaII | CCGG | 1 cut(s) | 355 |
| HphI | GGTGA | 2 cut(s) | 74, 84 |
| Hpy166II | GTNNAC | 2 cut(s) | 51, 172 |
| Hpy188I | TCNGA | 2 cut(s) | 334, 637 |
| Hpy188III | TCNNGA | 2 cut(s) | 179, 662 |
| Hpy8I | GTNNAC | 2 cut(s) | 51, 172 |
| HpyAV | CCTTC | 3 cut(s) | 182, 359, 589 |
| HpyCH4III | ACNGT | 5 cut(s) | 96, 163, 509, 548, 590 |
| HpyCH4IV | ACGT | 1 cut(s) | 666 |
| HpyCH4V | TGCA | 9 cut(s) | 51, 59, 410, 492, 520, 597, 620, 702, 728 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 257, 708 |
| HpyF3I | CTNAG | 2 cut(s) | 527, 634 |
| HpySE526I | ACGT | 1 cut(s) | 666 |
| Hsp92II | CATG | 4 cut(s) | 303, 324, 496, 520 |
| Kzo9I | GATC | 2 cut(s) | 11, 204 |
| LmnI | GCTCC | 2 cut(s) | 35, 43 |
| LpnPI | CCDG | 9 cut(s) | 45, 86, 164, 219, 368, 416, 423, 675, 725 |
| Lsp1109I | GCAGC | 4 cut(s) | 238, 258, 394, 712 |
| LweI | GCATC | 3 cut(s) | 120, 258, 607 |
| MaeI | CTAG | 1 cut(s) | 608 |
| MaeII | ACGT | 1 cut(s) | 666 |
| MaeIII | GTNAC | 4 cut(s) | 96, 446, 460, 670 |
| MalI | GATC | 2 cut(s) | 13, 206 |
| MboI | GATC | 2 cut(s) | 11, 204 |
| MboII | GAAGA | 7 cut(s) | 82, 149, 224, 241, 544, 551, 622 |
| MflI | RGATCY | 1 cut(s) | 11 |
| MhlI | GDGCHC | 2 cut(s) | 53, 262 |
| MluCI | AATT | 3 cut(s) | 295, 414, 521 |
| MlyI | GAGTC | 1 cut(s) | 273 |
| MmeI | TCCRAC | 1 cut(s) | 129 |
| MroXI | GAANNNNTTC | 1 cut(s) | 629 |
| MseI | TTAA | 3 cut(s) | 245, 585, 738 |
| MslI | CAYNNNNRTG | 1 cut(s) | 402 |
| MspI | CCGG | 1 cut(s) | 355 |
| MspR9I | CCNGG | 1 cut(s) | 355 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 257, 708 |
| NciI | CCSGG | 1 cut(s) | 355 |
| NdeII | GATC | 2 cut(s) | 11, 204 |
| NlaIII | CATG | 4 cut(s) | 303, 324, 496, 520 |
| NlaIV | GGNNCC | 1 cut(s) | 37 |
| NmeAIII | GCCGAG | 1 cut(s) | 64 |
| NmuCI | GTSAC | 1 cut(s) | 96 |
| NspI | RCATGY | 1 cut(s) | 324 |
| PaqCI | CACCTGC | 1 cut(s) | 50 |
| PdmI | GAANNNNTTC | 1 cut(s) | 629 |
| PfeI | GAWTC | 3 cut(s) | 304, 339, 688 |
| PkrI | GCNGC | 5 cut(s) | 253, 273, 409, 514, 727 |
| PleI | GAGTC | 1 cut(s) | 273 |
| PpsI | GAGTC | 1 cut(s) | 273 |
| PshBI | ATTAAT | 1 cut(s) | 245 |
| PspN4I | GGNNCC | 1 cut(s) | 37 |
| PsuI | RGATCY | 1 cut(s) | 11 |
| RseI | CAYNNNNRTG | 1 cut(s) | 402 |
| SaqAI | TTAA | 3 cut(s) | 245, 585, 738 |
| SatI | GCNGC | 5 cut(s) | 252, 272, 408, 513, 726 |
| Sau3AI | GATC | 2 cut(s) | 11, 204 |
| SchI | GAGTC | 1 cut(s) | 273 |
| ScrFI | CCNGG | 1 cut(s) | 355 |
| SduI | GDGCHC | 2 cut(s) | 53, 262 |
| SfaNI | GCATC | 3 cut(s) | 120, 258, 607 |
| SfcI | CTRYAG | 1 cut(s) | 571 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 402 |
| SpeI | ACTAGT | 1 cut(s) | 607 |
| Sse9I | AATT | 3 cut(s) | 295, 414, 521 |
| SsiI | CCGC | 2 cut(s) | 274, 512 |
| SspMI | CTAG | 1 cut(s) | 608 |
| StyD4I | CCNGG | 1 cut(s) | 353 |
| TaaI | ACNGT | 5 cut(s) | 96, 163, 509, 548, 590 |
| TaiI | ACGT | 1 cut(s) | 669 |
| TasI | AATT | 3 cut(s) | 295, 414, 521 |
| TauI | GCSGC | 1 cut(s) | 515 |
| TfiI | GAWTC | 3 cut(s) | 304, 339, 688 |
| Tru1I | TTAA | 3 cut(s) | 245, 585, 738 |
| Tru9I | TTAA | 3 cut(s) | 245, 585, 738 |
| TscAI | CASTG | 2 cut(s) | 514, 719 |
| TseFI | GTSAC | 1 cut(s) | 96 |
| TseI | GCWGC | 4 cut(s) | 251, 271, 407, 725 |
| Tsp45I | GTSAC | 1 cut(s) | 96 |
| TspDTI | ATGAA | 5 cut(s) | 171, 288, 571, 638, 756 |
| TspRI | CASTG | 2 cut(s) | 514, 719 |
| VneI | GTGCAC | 1 cut(s) | 49 |
| VspI | ATTAAT | 1 cut(s) | 245 |
| XapI | RAATTY | 2 cut(s) | 295, 414 |
| XceI | RCATGY | 1 cut(s) | 324 |
| XmnI | GAANNNNTTC | 1 cut(s) | 629 |
| XspI | CTAG | 1 cut(s) | 608 |