Pentatricopeptide repeat-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PPR_2 | PF13041 | 1 - 21 | 3.8e-06 | PPR repeat family |
| PPR_1 | PF12854 | 4 - 36 | 2.5e-11 | PPR repeat |
| PPR_2 | PF13041 | 8 - 57 | 1.4e-18 | PPR repeat family |
| PPR_long | PF17177 | 25 - 152 | 7.6e-09 | Pentacotripeptide-repeat region of PRORP |
| PPR_3 | PF13812 | 31 - 90 | 9.5e-11 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 40 - 71 | 9.3e-13 | PPR repeat |
| PPR_2 | PF13041 | 43 - 92 | 1.8e-17 | PPR repeat family |
| PPR | PF01535 | 46 - 75 | 8.4e-09 | PPR repeat |
| PPR_1 | PF12854 | 75 - 106 | 6.5e-07 | PPR repeat |
| PPR_2 | PF13041 | 80 - 126 | 2.2e-09 | PPR repeat family |
| PPR_1 | PF12854 | 110 - 139 | 9.1e-07 | PPR repeat |
| PPR_3 | PF13812 | 145 - 193 | 2.3e-06 | Pentatricopeptide repeat domain |
| PPR_2 | PF13041 | 151 - 197 | 2.1e-13 | PPR repeat family |
| PPR_1 | PF12854 | 181 - 212 | 3.4e-13 | PPR repeat |
| PPR_2 | PF13041 | 183 - 220 | 1.3e-09 | PPR repeat family |
| PPR | PF01535 | 186 - 215 | 1.6e-07 | PPR repeat |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccIII | TCCGGA | 1 cut(s) | 652 |
| AcoI | YGGCCR | 2 cut(s) | 175, 643 |
| AcsI | RAATTY | 1 cut(s) | 513 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 652 |
| AflIII | ACRYGT | 1 cut(s) | 462 |
| AgsI | TTSAA | 5 cut(s) | 91, 250, 484, 520, 605 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 16, 48 |
| AluBI | AGCT | 5 cut(s) | 94, 191, 296, 593, 649 |
| AluI | AGCT | 5 cut(s) | 94, 191, 296, 593, 649 |
| Alw26I | GTCTC | 1 cut(s) | 232 |
| Aor13HI | TCCGGA | 1 cut(s) | 652 |
| AoxI | GGCC | 2 cut(s) | 175, 643 |
| ApoI | RAATTY | 1 cut(s) | 513 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 543 |
| AsuHPI | GGTGA | 2 cut(s) | 235, 666 |
| BalI | TGGCCA | 2 cut(s) | 177, 645 |
| BanII | GRGCYC | 1 cut(s) | 437 |
| BccI | CCATC | 2 cut(s) | 277, 440 |
| BclI | TGATCA | 2 cut(s) | 108, 499 |
| BcoDI | GTCTC | 1 cut(s) | 232 |
| BmiI | GGNNCC | 1 cut(s) | 436 |
| BmsI | GCATC | 4 cut(s) | 5, 309, 598, 621 |
| BpmI | CTGGAG | 2 cut(s) | 111, 224 |
| BsaJI | CCNNGG | 1 cut(s) | 438 |
| BsaWI | WCCGGW | 1 cut(s) | 652 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 652 |
| Bse1I | ACTGG | 1 cut(s) | 178 |
| BseAI | TCCGGA | 1 cut(s) | 652 |
| BseDI | CCNNGG | 1 cut(s) | 438 |
| BseGI | GGATG | 3 cut(s) | 20, 288, 661 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 652 |
| BseMII | CTCAG | 1 cut(s) | 206 |
| BseNI | ACTGG | 1 cut(s) | 178 |
| BseRI | GAGGAG | 1 cut(s) | 399 |
| BseYI | CCCAGC | 1 cut(s) | 593 |
| BshFI | GGCC | 2 cut(s) | 177, 645 |
| BsiSI | CCGG | 1 cut(s) | 653 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 652 |
| BsmAI | GTCTC | 1 cut(s) | 232 |
| BsmBI | CGTCTC | 1 cut(s) | 232 |
| BsnI | GGCC | 2 cut(s) | 177, 645 |
| Bsp1286I | GDGCHC | 1 cut(s) | 437 |
| Bsp13I | TCCGGA | 1 cut(s) | 652 |
| Bsp143I | GATC | 4 cut(s) | 108, 415, 499, 580 |
| Bsp19I | CCATGG | 1 cut(s) | 438 |
| BspANI | GGCC | 2 cut(s) | 177, 645 |
| BspCNI | CTCAG | 1 cut(s) | 207 |
| BspEI | TCCGGA | 1 cut(s) | 652 |
| BspLI | GGNNCC | 1 cut(s) | 436 |
| BsrI | ACTGG | 1 cut(s) | 178 |
| BssECI | CCNNGG | 1 cut(s) | 438 |
| BssMI | GATC | 4 cut(s) | 108, 415, 499, 580 |
| BssT1I | CCWWGG | 1 cut(s) | 438 |
| Bst4CI | ACNGT | 2 cut(s) | 346, 618 |
| BstC8I | GCNNGC | 2 cut(s) | 20, 647 |
| BstDEI | CTNAG | 1 cut(s) | 215 |
| BstDSI | CCRYGG | 1 cut(s) | 438 |
| BstF5I | GGATG | 3 cut(s) | 20, 288, 661 |
| BstKTI | GATC | 4 cut(s) | 111, 418, 502, 583 |
| BstMAI | GTCTC | 1 cut(s) | 232 |
| BstMBI | GATC | 4 cut(s) | 108, 415, 499, 580 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 174 |
| BstNSI | RCATGY | 1 cut(s) | 466 |
| BsuRI | GGCC | 2 cut(s) | 177, 645 |
| BtgI | CCRYGG | 1 cut(s) | 438 |
| BtsCI | GGATG | 3 cut(s) | 20, 288, 661 |
| BtsIMutI | CAGTG | 2 cut(s) | 149, 185 |
| Cac8I | GCNNGC | 2 cut(s) | 20, 647 |
| CseI | GACGC | 1 cut(s) | 214 |
| CviAII | CATG | 5 cut(s) | 313, 439, 463, 663, 678 |
| DdeI | CTNAG | 1 cut(s) | 215 |
| DpnI | GATC | 4 cut(s) | 110, 417, 501, 582 |
| DpnII | GATC | 4 cut(s) | 108, 415, 499, 580 |
| EaeI | YGGCCR | 2 cut(s) | 175, 643 |
| Eco130I | CCWWGG | 1 cut(s) | 438 |
| Eco24I | GRGCYC | 1 cut(s) | 437 |
| EcoT14I | CCWWGG | 1 cut(s) | 438 |
| EcoT22I | ATGCAT | 1 cut(s) | 531 |
| EcoT38I | GRGCYC | 1 cut(s) | 437 |
| ErhI | CCWWGG | 1 cut(s) | 438 |
| Esp3I | CGTCTC | 1 cut(s) | 232 |
| FaeI | CATG | 5 cut(s) | 316, 442, 466, 666, 681 |
| FatI | CATG | 5 cut(s) | 312, 438, 462, 662, 677 |
| FbaI | TGATCA | 2 cut(s) | 108, 499 |
| FokI | GGATG | 3 cut(s) | 27, 295, 668 |
| FriOI | GRGCYC | 1 cut(s) | 437 |
| GsaI | CCCAGC | 1 cut(s) | 597 |
| GsuI | CTGGAG | 2 cut(s) | 111, 224 |
| HaeIII | GGCC | 2 cut(s) | 177, 645 |
| HapII | CCGG | 1 cut(s) | 653 |
| HgaI | GACGC | 1 cut(s) | 214 |
| Hin1II | CATG | 5 cut(s) | 316, 442, 466, 666, 681 |
| HindIII | AAGCTT | 1 cut(s) | 92 |
| HinfI | GANTC | 1 cut(s) | 659 |
| HpaII | CCGG | 1 cut(s) | 653 |
| HphI | GGTGA | 2 cut(s) | 235, 666 |
| Hpy188I | TCNGA | 1 cut(s) | 103 |
| Hpy188III | TCNNGA | 5 cut(s) | 128, 289, 548, 653, 683 |
| Hpy99I | CGWCG | 1 cut(s) | 56 |
| HpyAV | CCTTC | 1 cut(s) | 256 |
| HpyCH4III | ACNGT | 2 cut(s) | 346, 618 |
| HpyCH4V | TGCA | 7 cut(s) | 18, 168, 322, 529, 588, 611, 634 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 174 |
| HpyF3I | CTNAG | 1 cut(s) | 215 |
| Hsp92II | CATG | 5 cut(s) | 316, 442, 466, 666, 681 |
| Kpn2I | TCCGGA | 1 cut(s) | 652 |
| Ksp22I | TGATCA | 2 cut(s) | 108, 499 |
| Kzo9I | GATC | 4 cut(s) | 108, 415, 499, 580 |
| LmnI | GCTCC | 3 cut(s) | 130, 205, 440 |
| LweI | GCATC | 4 cut(s) | 5, 309, 598, 621 |
| MaeIII | GTNAC | 4 cut(s) | 136, 346, 458, 672 |
| MalI | GATC | 4 cut(s) | 110, 417, 501, 582 |
| MboI | GATC | 4 cut(s) | 108, 415, 499, 580 |
| MboII | GAAGA | 2 cut(s) | 17, 617 |
| MhlI | GDGCHC | 1 cut(s) | 437 |
| MlsI | TGGCCA | 2 cut(s) | 177, 645 |
| MluCI | AATT | 6 cut(s) | 75, 267, 468, 513, 600, 688 |
| MluNI | TGGCCA | 2 cut(s) | 177, 645 |
| MnlI | CCTC | 4 cut(s) | 5, 58, 377, 581 |
| Mox20I | TGGCCA | 2 cut(s) | 177, 645 |
| Mph1103I | ATGCAT | 1 cut(s) | 531 |
| MroI | TCCGGA | 1 cut(s) | 652 |
| MroXI | GAANNNNTTC | 1 cut(s) | 543 |
| MscI | TGGCCA | 2 cut(s) | 177, 645 |
| MseI | TTAA | 3 cut(s) | 467, 471, 564 |
| MslI | CAYNNNNRTG | 1 cut(s) | 317 |
| Msp20I | TGGCCA | 2 cut(s) | 177, 645 |
| MspI | CCGG | 1 cut(s) | 653 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 174 |
| NcoI | CCATGG | 1 cut(s) | 438 |
| NdeII | GATC | 4 cut(s) | 108, 415, 499, 580 |
| NlaIII | CATG | 5 cut(s) | 316, 442, 466, 666, 681 |
| NlaIV | GGNNCC | 1 cut(s) | 436 |
| NmuCI | GTSAC | 2 cut(s) | 136, 672 |
| NsiI | ATGCAT | 1 cut(s) | 531 |
| NspI | RCATGY | 1 cut(s) | 466 |
| PacI | TTAATTAA | 1 cut(s) | 471 |
| PciI | ACATGT | 1 cut(s) | 462 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 60 |
| PdmI | GAANNNNTTC | 1 cut(s) | 543 |
| PfeI | GAWTC | 1 cut(s) | 659 |
| PflFI | GACNNNGTC | 1 cut(s) | 670 |
| PscI | ACATGT | 1 cut(s) | 462 |
| PspFI | CCCAGC | 1 cut(s) | 593 |
| PspN4I | GGNNCC | 1 cut(s) | 436 |
| PsyI | GACNNNGTC | 1 cut(s) | 670 |
| RseI | CAYNNNNRTG | 1 cut(s) | 317 |
| SaqAI | TTAA | 3 cut(s) | 467, 471, 564 |
| Sau3AI | GATC | 4 cut(s) | 108, 415, 499, 580 |
| SduI | GDGCHC | 1 cut(s) | 437 |
| SetI | ASST | 7 cut(s) | 96, 193, 200, 248, 298, 595, 651 |
| SfaNI | GCATC | 4 cut(s) | 5, 309, 598, 621 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 317 |
| Sse9I | AATT | 6 cut(s) | 75, 267, 468, 513, 600, 688 |
| StyI | CCWWGG | 1 cut(s) | 438 |
| TaaI | ACNGT | 2 cut(s) | 346, 618 |
| TaqI | TCGA | 1 cut(s) | 51 |
| TasI | AATT | 6 cut(s) | 75, 267, 468, 513, 600, 688 |
| TfiI | GAWTC | 1 cut(s) | 659 |
| Tru1I | TTAA | 3 cut(s) | 467, 471, 564 |
| Tru9I | TTAA | 3 cut(s) | 467, 471, 564 |
| TscAI | CASTG | 2 cut(s) | 156, 185 |
| TseFI | GTSAC | 2 cut(s) | 136, 672 |
| Tsp45I | GTSAC | 2 cut(s) | 136, 672 |
| TspDTI | ATGAA | 1 cut(s) | 651 |
| TspGWI | ACGGA | 2 cut(s) | 174, 489 |
| TspRI | CASTG | 2 cut(s) | 156, 185 |
| Tth111I | GACNNNGTC | 1 cut(s) | 670 |
| XapI | RAATTY | 1 cut(s) | 513 |
| XceI | RCATGY | 1 cut(s) | 466 |
| XmnI | GAANNNNTTC | 1 cut(s) | 543 |
| Zsp2I | ATGCAT | 1 cut(s) | 531 |