Pentatricopeptide repeat-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PPR_2 | PF13041 | 91 - 138 | 2.5e-07 | PPR repeat family |
| PPR_3 | PF13812 | 118 - 172 | 4.6e-10 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 123 - 155 | 8.2e-06 | PPR repeat |
| PPR_2 | PF13041 | 126 - 175 | 4.9e-12 | PPR repeat family |
| PPR_3 | PF13812 | 158 - 207 | 2.7e-12 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 159 - 191 | 3.8e-12 | PPR repeat |
| PPR_2 | PF13041 | 162 - 211 | 5e-17 | PPR repeat family |
| PPR | PF01535 | 165 - 195 | 5.2e-06 | PPR repeat |
| PPR_1 | PF12854 | 193 - 225 | 1.7e-13 | PPR repeat |
| PPR_2 | PF13041 | 197 - 246 | 5.3e-18 | PPR repeat family |
| PPR | PF01535 | 200 - 230 | 8.9e-06 | PPR repeat |
| PPR_3 | PF13812 | 221 - 278 | 2.3e-10 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 229 - 261 | 1.4e-08 | PPR repeat |
| PPR_2 | PF13041 | 232 - 281 | 3.3e-16 | PPR repeat family |
| PPR_1 | PF12854 | 263 - 295 | 8e-07 | PPR repeat |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 384 |
| AccII | CGCG | 1 cut(s) | 157 |
| AccIII | TCCGGA | 1 cut(s) | 694 |
| AciI | CCGC | 2 cut(s) | 441, 545 |
| AcsI | RAATTY | 3 cut(s) | 209, 353, 447 |
| AcyI | GRCGYC | 1 cut(s) | 381 |
| AfaI | GTAC | 1 cut(s) | 41 |
| AflIII | ACRYGT | 1 cut(s) | 155 |
| AgsI | TTSAA | 9 cut(s) | 214, 319, 361, 374, 502, 725, 772, 817, 890 |
| AhlI | ACTAGT | 1 cut(s) | 508 |
| AluBI | AGCT | 2 cut(s) | 336, 758 |
| AluI | AGCT | 2 cut(s) | 336, 758 |
| Alw26I | GTCTC | 1 cut(s) | 872 |
| Aor13HI | TCCGGA | 1 cut(s) | 694 |
| AoxI | GGCC | 2 cut(s) | 196, 438 |
| ApoI | RAATTY | 3 cut(s) | 209, 353, 447 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 147, 662 |
| AspS9I | GGNCC | 1 cut(s) | 196 |
| AsuHPI | GGTGA | 3 cut(s) | 376, 793, 802 |
| AxyI | CCTNAGG | 1 cut(s) | 435 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 627, 660 |
| BbsI | GAAGAC | 1 cut(s) | 362 |
| BccI | CCATC | 6 cut(s) | 102, 239, 523, 562, 620, 844 |
| BceAI | ACGGC | 2 cut(s) | 297, 424 |
| BciVI | GTATCC | 1 cut(s) | 628 |
| BcoDI | GTCTC | 1 cut(s) | 872 |
| BcuI | ACTAGT | 1 cut(s) | 508 |
| BfaI | CTAG | 1 cut(s) | 509 |
| BfmI | CTRYAG | 1 cut(s) | 16 |
| BfuI | GTATCC | 1 cut(s) | 628 |
| BglII | AGATCT | 1 cut(s) | 802 |
| BisI | GCNGC | 2 cut(s) | 441, 546 |
| BlsI | GCNGC | 2 cut(s) | 442, 547 |
| BmcAI | AGTACT | 1 cut(s) | 41 |
| BmgT120I | GGNCC | 1 cut(s) | 196 |
| BmsI | GCATC | 3 cut(s) | 112, 572, 640 |
| BpiI | GAAGAC | 1 cut(s) | 362 |
| BpuEI | CTTGAG | 1 cut(s) | 404 |
| BsaHI | GRCGYC | 1 cut(s) | 381 |
| BsaWI | WCCGGW | 1 cut(s) | 694 |
| Bse1I | ACTGG | 2 cut(s) | 645, 745 |
| Bse21I | CCTNAGG | 1 cut(s) | 435 |
| Bse3DI | GCAATG | 1 cut(s) | 660 |
| BseAI | TCCGGA | 1 cut(s) | 694 |
| BseGI | GGATG | 5 cut(s) | 145, 231, 587, 703, 855 |
| BseMI | GCAATG | 1 cut(s) | 660 |
| BseMII | CTCAG | 2 cut(s) | 426, 681 |
| BseNI | ACTGG | 2 cut(s) | 645, 745 |
| BseRI | GAGGAG | 1 cut(s) | 797 |
| BsgI | GTGCAG | 1 cut(s) | 210 |
| Bsh1236I | CGCG | 1 cut(s) | 157 |
| BshFI | GGCC | 2 cut(s) | 198, 440 |
| BsiSI | CCGG | 2 cut(s) | 590, 695 |
| BsmAI | GTCTC | 1 cut(s) | 872 |
| BsmBI | CGTCTC | 1 cut(s) | 872 |
| BsnI | GGCC | 2 cut(s) | 198, 440 |
| Bsp13I | TCCGGA | 1 cut(s) | 694 |
| Bsp143I | GATC | 2 cut(s) | 472, 802 |
| BspACI | CCGC | 2 cut(s) | 441, 545 |
| BspANI | GGCC | 2 cut(s) | 198, 440 |
| BspCNI | CTCAG | 2 cut(s) | 427, 680 |
| BspEI | TCCGGA | 1 cut(s) | 694 |
| BspFNI | CGCG | 1 cut(s) | 157 |
| BsrDI | GCAATG | 1 cut(s) | 660 |
| BsrI | ACTGG | 2 cut(s) | 645, 745 |
| BssMI | GATC | 2 cut(s) | 472, 802 |
| BssNI | GRCGYC | 1 cut(s) | 381 |
| Bst4CI | ACNGT | 4 cut(s) | 293, 623, 839, 871 |
| Bst6I | CTCTTC | 1 cut(s) | 668 |
| BstACI | GRCGYC | 1 cut(s) | 381 |
| BstC8I | GCNNGC | 1 cut(s) | 587 |
| BstDEI | CTNAG | 2 cut(s) | 435, 667 |
| BstF5I | GGATG | 5 cut(s) | 145, 231, 587, 703, 855 |
| BstFNI | CGCG | 1 cut(s) | 157 |
| BstKTI | GATC | 2 cut(s) | 475, 805 |
| BstMAI | GTCTC | 1 cut(s) | 872 |
| BstMBI | GATC | 2 cut(s) | 472, 802 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 154, 163, 741 |
| BstSFI | CTRYAG | 1 cut(s) | 16 |
| BstUI | CGCG | 1 cut(s) | 157 |
| BstV2I | GAAGAC | 1 cut(s) | 362 |
| BstX2I | RGATCY | 1 cut(s) | 802 |
| BstYI | RGATCY | 1 cut(s) | 802 |
| Bsu36I | CCTNAGG | 1 cut(s) | 435 |
| BsuI | GTATCC | 1 cut(s) | 628 |
| BsuRI | GGCC | 2 cut(s) | 198, 440 |
| BtsCI | GGATG | 5 cut(s) | 145, 231, 587, 703, 855 |
| BtsIMutI | CAGTG | 3 cut(s) | 638, 752, 835 |
| Cac8I | GCNNGC | 1 cut(s) | 587 |
| Cfr13I | GGNCC | 1 cut(s) | 196 |
| CseI | GACGC | 1 cut(s) | 146 |
| Csp6I | GTAC | 1 cut(s) | 40 |
| CviAII | CATG | 1 cut(s) | 127 |
| CviQI | GTAC | 1 cut(s) | 40 |
| DdeI | CTNAG | 2 cut(s) | 435, 667 |
| DpnI | GATC | 2 cut(s) | 474, 804 |
| DpnII | GATC | 2 cut(s) | 472, 802 |
| Eam1104I | CTCTTC | 1 cut(s) | 668 |
| EarI | CTCTTC | 1 cut(s) | 668 |
| Eco81I | CCTNAGG | 1 cut(s) | 435 |
| Esp3I | CGTCTC | 1 cut(s) | 872 |
| FaeI | CATG | 1 cut(s) | 130 |
| FatI | CATG | 1 cut(s) | 126 |
| FauNDI | CATATG | 1 cut(s) | 324 |
| Fnu4HI | GCNGC | 2 cut(s) | 441, 546 |
| FokI | GGATG | 5 cut(s) | 152, 218, 594, 710, 862 |
| Fsp4HI | GCNGC | 2 cut(s) | 441, 546 |
| FspBI | CTAG | 1 cut(s) | 509 |
| GluI | GCNGC | 2 cut(s) | 441, 546 |
| HaeIII | GGCC | 2 cut(s) | 198, 440 |
| HapII | CCGG | 2 cut(s) | 590, 695 |
| HgaI | GACGC | 1 cut(s) | 146 |
| Hin1I | GRCGYC | 1 cut(s) | 381 |
| Hin1II | CATG | 1 cut(s) | 130 |
| HincII | GTYRAC | 2 cut(s) | 34, 118 |
| HindII | GTYRAC | 2 cut(s) | 34, 118 |
| HinfI | GANTC | 4 cut(s) | 319, 424, 721, 784 |
| HpaII | CCGG | 2 cut(s) | 590, 695 |
| HphI | GGTGA | 3 cut(s) | 376, 793, 802 |
| Hpy166II | GTNNAC | 2 cut(s) | 34, 118 |
| Hpy188I | TCNGA | 4 cut(s) | 101, 189, 455, 670 |
| Hpy188III | TCNNGA | 3 cut(s) | 421, 695, 800 |
| Hpy8I | GTNNAC | 2 cut(s) | 34, 118 |
| HpyAV | CCTTC | 5 cut(s) | 33, 124, 400, 823, 839 |
| HpyCH4III | ACNGT | 4 cut(s) | 293, 623, 839, 871 |
| HpyCH4IV | ACGT | 1 cut(s) | 381 |
| HpyCH4V | TGCA | 6 cut(s) | 227, 553, 585, 630, 653, 735 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 154, 163, 741 |
| HpyF3I | CTNAG | 2 cut(s) | 435, 667 |
| HpySE526I | ACGT | 1 cut(s) | 381 |
| Hsp92I | GRCGYC | 1 cut(s) | 381 |
| Hsp92II | CATG | 1 cut(s) | 130 |
| Kpn2I | TCCGGA | 1 cut(s) | 694 |
| Kzo9I | GATC | 2 cut(s) | 472, 802 |
| LmnI | GCTCC | 1 cut(s) | 697 |
| LpnPI | CCDG | 8 cut(s) | 97, 390, 447, 603, 626, 708, 758, 813 |
| LweI | GCATC | 3 cut(s) | 112, 572, 640 |
| MaeI | CTAG | 1 cut(s) | 509 |
| MaeII | ACGT | 1 cut(s) | 381 |
| MaeIII | GTNAC | 4 cut(s) | 382, 493, 598, 703 |
| MalI | GATC | 2 cut(s) | 474, 804 |
| MboI | GATC | 2 cut(s) | 472, 802 |
| MboII | GAAGA | 4 cut(s) | 349, 362, 577, 655 |
| MflI | RGATCY | 1 cut(s) | 802 |
| MluCI | AATT | 6 cut(s) | 209, 264, 353, 362, 447, 554 |
| MluI | ACGCGT | 1 cut(s) | 155 |
| MlyI | GAGTC | 1 cut(s) | 793 |
| MmeI | TCCRAC | 1 cut(s) | 117 |
| MroI | TCCGGA | 1 cut(s) | 694 |
| MroXI | GAANNNNTTC | 2 cut(s) | 147, 662 |
| MseI | TTAA | 3 cut(s) | 288, 513, 606 |
| MslI | CAYNNNNRTG | 1 cut(s) | 131 |
| MspI | CCGG | 2 cut(s) | 590, 695 |
| MvnI | CGCG | 1 cut(s) | 157 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 154, 163, 741 |
| NdeI | CATATG | 1 cut(s) | 324 |
| NdeII | GATC | 2 cut(s) | 472, 802 |
| NlaIII | CATG | 1 cut(s) | 130 |
| NmuCI | GTSAC | 1 cut(s) | 382 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 861 |
| PdmI | GAANNNNTTC | 2 cut(s) | 147, 662 |
| PfeI | GAWTC | 3 cut(s) | 319, 424, 721 |
| PkrI | GCNGC | 2 cut(s) | 442, 547 |
| PleI | GAGTC | 1 cut(s) | 792 |
| PpsI | GAGTC | 1 cut(s) | 792 |
| PspPI | GGNCC | 1 cut(s) | 196 |
| PsuI | RGATCY | 1 cut(s) | 802 |
| RsaI | GTAC | 1 cut(s) | 41 |
| RsaNI | GTAC | 1 cut(s) | 40 |
| RseI | CAYNNNNRTG | 1 cut(s) | 131 |
| SaqAI | TTAA | 3 cut(s) | 288, 513, 606 |
| SatI | GCNGC | 2 cut(s) | 441, 546 |
| Sau3AI | GATC | 2 cut(s) | 472, 802 |
| Sau96I | GGNCC | 1 cut(s) | 196 |
| ScaI | AGTACT | 1 cut(s) | 41 |
| SchI | GAGTC | 1 cut(s) | 793 |
| SfaNI | GCATC | 3 cut(s) | 112, 572, 640 |
| SfcI | CTRYAG | 1 cut(s) | 16 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 131 |
| SmlI | CTYRAG | 1 cut(s) | 419 |
| SmoI | CTYRAG | 1 cut(s) | 419 |
| SpeI | ACTAGT | 1 cut(s) | 508 |
| Sse9I | AATT | 6 cut(s) | 209, 264, 353, 362, 447, 554 |
| SsiI | CCGC | 2 cut(s) | 441, 545 |
| SspMI | CTAG | 1 cut(s) | 509 |
| TaaI | ACNGT | 4 cut(s) | 293, 623, 839, 871 |
| TaiI | ACGT | 1 cut(s) | 384 |
| TaqI | TCGA | 2 cut(s) | 262, 787 |
| TasI | AATT | 6 cut(s) | 209, 264, 353, 362, 447, 554 |
| TatI | WGTACW | 1 cut(s) | 39 |
| TauI | GCSGC | 2 cut(s) | 443, 548 |
| TfiI | GAWTC | 3 cut(s) | 319, 424, 721 |
| Tru1I | TTAA | 3 cut(s) | 288, 513, 606 |
| Tru9I | TTAA | 3 cut(s) | 288, 513, 606 |
| TscAI | CASTG | 3 cut(s) | 645, 752, 842 |
| TseFI | GTSAC | 1 cut(s) | 382 |
| Tsp45I | GTSAC | 1 cut(s) | 382 |
| TspDTI | ATGAA | 7 cut(s) | 44, 143, 156, 172, 382, 671, 789 |
| TspRI | CASTG | 3 cut(s) | 645, 752, 842 |
| XapI | RAATTY | 3 cut(s) | 209, 353, 447 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 133 |
| XmnI | GAANNNNTTC | 2 cut(s) | 147, 662 |
| XspI | CTAG | 1 cut(s) | 509 |
| ZraI | GACGTC | 1 cut(s) | 382 |
| ZrmI | AGTACT | 1 cut(s) | 41 |