Pentatricopeptide repeat-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PPR_1 | PF12854 | 5 - 36 | 4.7e-08 | PPR repeat |
| PPR_2 | PF13041 | 8 - 56 | 1e-14 | PPR repeat family |
| PPR_1 | PF12854 | 40 - 71 | 2.9e-12 | PPR repeat |
| PPR_2 | PF13041 | 43 - 91 | 2.4e-14 | PPR repeat family |
| PPR | PF01535 | 46 - 75 | 2.3e-09 | PPR repeat |
| PPR_1 | PF12854 | 75 - 106 | 2.8e-06 | PPR repeat |
| PPR_2 | PF13041 | 79 - 127 | 2.1e-17 | PPR repeat family |
| PPR | PF01535 | 82 - 109 | 1.9e-07 | PPR repeat |
| PPR_long | PF17177 | 94 - 200 | 4.9e-09 | Pentacotripeptide-repeat region of PRORP |
| PPR_3 | PF13812 | 101 - 158 | 1.5e-08 | Pentatricopeptide repeat domain |
| TPR_24 | PF23276 | 102 - 204 | 7.2e-10 | Fungal tetratrico peptide repeats |
| PPR_1 | PF12854 | 111 - 141 | 5.9e-16 | PPR repeat |
| PPR_2 | PF13041 | 113 - 162 | 8.4e-19 | PPR repeat family |
| PPR | PF01535 | 116 - 145 | 1.3e-10 | PPR repeat |
| PPR_1 | PF12854 | 145 - 177 | 1.6e-07 | PPR repeat |
| PPR_2 | PF13041 | 184 - 234 | 5.3e-12 | PPR repeat family |
| PPR_1 | PF12854 | 218 - 249 | 5.5e-06 | PPR repeat |
| PPR_2 | PF13041 | 225 - 260 | 2.6e-06 | PPR repeat family |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 3 cut(s) | 172, 383, 609 |
| AclWI | GGATC | 2 cut(s) | 781, 812 |
| AcoI | YGGCCR | 1 cut(s) | 433 |
| AgsI | TTSAA | 8 cut(s) | 40, 101, 113, 310, 452, 578, 605, 740 |
| AhlI | ACTAGT | 1 cut(s) | 331 |
| AluBI | AGCT | 4 cut(s) | 439, 581, 593, 835 |
| AluI | AGCT | 4 cut(s) | 439, 581, 593, 835 |
| Alw26I | GTCTC | 2 cut(s) | 382, 609 |
| AlwI | GGATC | 2 cut(s) | 781, 812 |
| AoxI | GGCC | 1 cut(s) | 433 |
| ApeKI | GCWGC | 1 cut(s) | 832 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 333 |
| AspS9I | GGNCC | 1 cut(s) | 672 |
| AsuHPI | GGTGA | 2 cut(s) | 16, 25 |
| AvaII | GGWCC | 1 cut(s) | 672 |
| BalI | TGGCCA | 1 cut(s) | 435 |
| BanII | GRGCYC | 1 cut(s) | 227 |
| BbsI | GAAGAC | 1 cut(s) | 75 |
| BbvI | GCAGC | 1 cut(s) | 844 |
| BccI | CCATC | 6 cut(s) | 362, 467, 520, 634, 659, 764 |
| BciVI | GTATCC | 1 cut(s) | 26 |
| BcoDI | GTCTC | 2 cut(s) | 382, 609 |
| BcuI | ACTAGT | 1 cut(s) | 331 |
| BfaI | CTAG | 2 cut(s) | 332, 425 |
| BfmI | CTRYAG | 1 cut(s) | 765 |
| BfuI | GTATCC | 1 cut(s) | 26 |
| BisI | GCNGC | 1 cut(s) | 833 |
| BlsI | GCNGC | 1 cut(s) | 834 |
| Bme18I | GGWCC | 1 cut(s) | 672 |
| BmgT120I | GGNCC | 1 cut(s) | 672 |
| BmiI | GGNNCC | 1 cut(s) | 226 |
| BmsI | GCATC | 2 cut(s) | 328, 411 |
| BpiI | GAAGAC | 1 cut(s) | 75 |
| BpmI | CTGGAG | 1 cut(s) | 645 |
| BpuEI | CTTGAG | 1 cut(s) | 770 |
| BsaI | GGTCTC | 1 cut(s) | 609 |
| BsaJI | CCNNGG | 2 cut(s) | 228, 691 |
| BseDI | CCNNGG | 2 cut(s) | 228, 691 |
| BseGI | GGATG | 1 cut(s) | 659 |
| BseMII | CTCAG | 2 cut(s) | 408, 623 |
| BseXI | GCAGC | 1 cut(s) | 844 |
| BshFI | GGCC | 1 cut(s) | 435 |
| BsiSI | CCGG | 1 cut(s) | 821 |
| BsmAI | GTCTC | 2 cut(s) | 382, 609 |
| BsnI | GGCC | 1 cut(s) | 435 |
| Bso31I | GGTCTC | 1 cut(s) | 609 |
| Bsp1286I | GDGCHC | 1 cut(s) | 227 |
| Bsp143I | GATC | 3 cut(s) | 205, 773, 817 |
| Bsp19I | CCATGG | 1 cut(s) | 228 |
| BspACI | CCGC | 3 cut(s) | 172, 383, 609 |
| BspANI | GGCC | 1 cut(s) | 435 |
| BspCNI | CTCAG | 2 cut(s) | 409, 624 |
| BspLI | GGNNCC | 1 cut(s) | 226 |
| BspMAI | CTGCAG | 1 cut(s) | 769 |
| BspPI | GGATC | 2 cut(s) | 781, 812 |
| BspTNI | GGTCTC | 1 cut(s) | 609 |
| BssECI | CCNNGG | 2 cut(s) | 228, 691 |
| BssMI | GATC | 3 cut(s) | 205, 773, 817 |
| BssT1I | CCWWGG | 1 cut(s) | 228 |
| Bst4CI | ACNGT | 3 cut(s) | 161, 167, 710 |
| BstC8I | GCNNGC | 1 cut(s) | 437 |
| BstDEI | CTNAG | 2 cut(s) | 417, 632 |
| BstDSI | CCRYGG | 1 cut(s) | 228 |
| BstF5I | GGATG | 1 cut(s) | 659 |
| BstKTI | GATC | 3 cut(s) | 208, 776, 820 |
| BstMAI | GTCTC | 2 cut(s) | 382, 609 |
| BstMBI | GATC | 3 cut(s) | 205, 773, 817 |
| BstSFI | CTRYAG | 1 cut(s) | 765 |
| BstV1I | GCAGC | 1 cut(s) | 844 |
| BstV2I | GAAGAC | 1 cut(s) | 75 |
| BstX2I | RGATCY | 1 cut(s) | 817 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 94, 669 |
| BstYI | RGATCY | 1 cut(s) | 817 |
| BsuI | GTATCC | 1 cut(s) | 26 |
| BsuRI | GGCC | 1 cut(s) | 435 |
| BtgI | CCRYGG | 1 cut(s) | 228 |
| BtsCI | GGATG | 1 cut(s) | 659 |
| BtsIMutI | CAGTG | 1 cut(s) | 715 |
| Cac8I | GCNNGC | 1 cut(s) | 437 |
| Cfr13I | GGNCC | 1 cut(s) | 672 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 346, 381 |
| CviAII | CATG | 3 cut(s) | 73, 229, 720 |
| DdeI | CTNAG | 2 cut(s) | 417, 632 |
| DpnI | GATC | 3 cut(s) | 207, 775, 819 |
| DpnII | GATC | 3 cut(s) | 205, 773, 817 |
| EaeI | YGGCCR | 1 cut(s) | 433 |
| Eco130I | CCWWGG | 1 cut(s) | 228 |
| Eco24I | GRGCYC | 1 cut(s) | 227 |
| Eco31I | GGTCTC | 1 cut(s) | 609 |
| Eco32I | GATATC | 1 cut(s) | 717 |
| Eco47I | GGWCC | 1 cut(s) | 672 |
| EcoRV | GATATC | 1 cut(s) | 717 |
| EcoT14I | CCWWGG | 1 cut(s) | 228 |
| EcoT22I | ATGCAT | 1 cut(s) | 321 |
| EcoT38I | GRGCYC | 1 cut(s) | 227 |
| ErhI | CCWWGG | 1 cut(s) | 228 |
| FaeI | CATG | 3 cut(s) | 76, 232, 723 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 531, 563, 732, 764 |
| FatI | CATG | 3 cut(s) | 72, 228, 719 |
| FauI | CCCGC | 2 cut(s) | 165, 376 |
| Fnu4HI | GCNGC | 1 cut(s) | 833 |
| FokI | GGATG | 1 cut(s) | 666 |
| FriOI | GRGCYC | 1 cut(s) | 227 |
| Fsp4HI | GCNGC | 1 cut(s) | 833 |
| FspBI | CTAG | 2 cut(s) | 332, 425 |
| GluI | GCNGC | 1 cut(s) | 833 |
| GsuI | CTGGAG | 1 cut(s) | 645 |
| HaeIII | GGCC | 1 cut(s) | 435 |
| HapII | CCGG | 1 cut(s) | 821 |
| Hin1II | CATG | 3 cut(s) | 76, 232, 723 |
| HindIII | AAGCTT | 1 cut(s) | 579 |
| HinfI | GANTC | 3 cut(s) | 109, 605, 845 |
| HpaII | CCGG | 1 cut(s) | 821 |
| HphI | GGTGA | 2 cut(s) | 16, 25 |
| Hpy166II | GTNNAC | 3 cut(s) | 11, 298, 562 |
| Hpy188I | TCNGA | 3 cut(s) | 243, 418, 692 |
| Hpy188III | TCNNGA | 4 cut(s) | 326, 662, 740, 849 |
| Hpy8I | GTNNAC | 3 cut(s) | 11, 298, 562 |
| HpyAV | CCTTC | 3 cut(s) | 29, 46, 799 |
| HpyCH4III | ACNGT | 3 cut(s) | 161, 167, 710 |
| HpyCH4IV | ACGT | 1 cut(s) | 13 |
| HpyCH4V | TGCA | 7 cut(s) | 63, 273, 319, 378, 588, 767, 832 |
| HpyF3I | CTNAG | 2 cut(s) | 417, 632 |
| HpySE526I | ACGT | 1 cut(s) | 13 |
| Hsp92II | CATG | 3 cut(s) | 76, 232, 723 |
| Kzo9I | GATC | 3 cut(s) | 205, 773, 817 |
| LmnI | GCTCC | 1 cut(s) | 230 |
| LpnPI | CCDG | 6 cut(s) | 141, 311, 449, 579, 675, 834 |
| Lsp1109I | GCAGC | 1 cut(s) | 844 |
| LweI | GCATC | 2 cut(s) | 328, 411 |
| MaeI | CTAG | 2 cut(s) | 332, 425 |
| MaeII | ACGT | 1 cut(s) | 13 |
| MaeIII | GTNAC | 5 cut(s) | 31, 161, 248, 482, 627 |
| MalI | GATC | 3 cut(s) | 207, 775, 819 |
| MboI | GATC | 3 cut(s) | 205, 773, 817 |
| MboII | GAAGA | 2 cut(s) | 80, 492 |
| MflI | RGATCY | 1 cut(s) | 817 |
| MhlI | GDGCHC | 1 cut(s) | 227 |
| MlsI | TGGCCA | 1 cut(s) | 435 |
| MluCI | AATT | 4 cut(s) | 512, 600, 735, 785 |
| MluNI | TGGCCA | 1 cut(s) | 435 |
| MmeI | TCCRAC | 1 cut(s) | 650 |
| MnlI | CCTC | 4 cut(s) | 181, 638, 686, 747 |
| Mox20I | TGGCCA | 1 cut(s) | 435 |
| Mph1103I | ATGCAT | 1 cut(s) | 321 |
| MroXI | GAANNNNTTC | 1 cut(s) | 333 |
| MscI | TGGCCA | 1 cut(s) | 435 |
| MseI | TTAA | 4 cut(s) | 261, 519, 701, 839 |
| MslI | CAYNNNNRTG | 1 cut(s) | 77 |
| Msp20I | TGGCCA | 1 cut(s) | 435 |
| MspA1I | CMGCKG | 1 cut(s) | 835 |
| MspI | CCGG | 1 cut(s) | 821 |
| NcoI | CCATGG | 1 cut(s) | 228 |
| NdeII | GATC | 3 cut(s) | 205, 773, 817 |
| NlaIII | CATG | 3 cut(s) | 76, 232, 723 |
| NlaIV | GGNNCC | 1 cut(s) | 226 |
| NmuCI | GTSAC | 1 cut(s) | 31 |
| NsiI | ATGCAT | 1 cut(s) | 321 |
| PdmI | GAANNNNTTC | 1 cut(s) | 333 |
| PfeI | GAWTC | 3 cut(s) | 109, 605, 845 |
| PkrI | GCNGC | 1 cut(s) | 834 |
| PspN4I | GGNNCC | 1 cut(s) | 226 |
| PspPI | GGNCC | 1 cut(s) | 672 |
| PstI | CTGCAG | 1 cut(s) | 769 |
| PsuI | RGATCY | 1 cut(s) | 817 |
| PvuII | CAGCTG | 1 cut(s) | 835 |
| RseI | CAYNNNNRTG | 1 cut(s) | 77 |
| SaqAI | TTAA | 4 cut(s) | 261, 519, 701, 839 |
| SatI | GCNGC | 1 cut(s) | 833 |
| Sau3AI | GATC | 3 cut(s) | 205, 773, 817 |
| Sau96I | GGNCC | 1 cut(s) | 672 |
| SduI | GDGCHC | 1 cut(s) | 227 |
| SfaNI | GCATC | 2 cut(s) | 328, 411 |
| SfcI | CTRYAG | 1 cut(s) | 765 |
| SinI | GGWCC | 1 cut(s) | 672 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 77 |
| SmlI | CTYRAG | 1 cut(s) | 749 |
| SmoI | CTYRAG | 1 cut(s) | 749 |
| SpeI | ACTAGT | 1 cut(s) | 331 |
| Sse9I | AATT | 4 cut(s) | 512, 600, 735, 785 |
| SsiI | CCGC | 3 cut(s) | 172, 383, 609 |
| SspMI | CTAG | 2 cut(s) | 332, 425 |
| StyI | CCWWGG | 1 cut(s) | 228 |
| TaaI | ACNGT | 3 cut(s) | 161, 167, 710 |
| TaiI | ACGT | 1 cut(s) | 16 |
| TaqI | TCGA | 2 cut(s) | 288, 803 |
| TasI | AATT | 4 cut(s) | 512, 600, 735, 785 |
| TfiI | GAWTC | 3 cut(s) | 109, 605, 845 |
| Tru1I | TTAA | 4 cut(s) | 261, 519, 701, 839 |
| Tru9I | TTAA | 4 cut(s) | 261, 519, 701, 839 |
| TscAI | CASTG | 1 cut(s) | 715 |
| TseFI | GTSAC | 1 cut(s) | 31 |
| TseI | GCWGC | 1 cut(s) | 832 |
| Tsp45I | GTSAC | 1 cut(s) | 31 |
| TspDTI | ATGAA | 1 cut(s) | 743 |
| TspGWI | ACGGA | 1 cut(s) | 279 |
| TspRI | CASTG | 1 cut(s) | 715 |
| VpaK11BI | GGWCC | 1 cut(s) | 672 |
| XmnI | GAANNNNTTC | 1 cut(s) | 333 |
| XspI | CTAG | 2 cut(s) | 332, 425 |
| Zsp2I | ATGCAT | 1 cut(s) | 321 |