Pentatricopeptide repeat-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PPR_1 | PF12854 | 5 - 36 | 1e-10 | PPR repeat |
| PPR_2 | PF13041 | 8 - 56 | 4.6e-13 | PPR repeat family |
| TPR_24 | PF23276 | 10 - 106 | 4.3e-07 | Fungal tetratrico peptide repeats |
| PPR_1 | PF12854 | 40 - 71 | 1.8e-06 | PPR repeat |
| PPR_2 | PF13041 | 44 - 91 | 8.9e-11 | PPR repeat family |
| PPR | PF01535 | 46 - 75 | 1.7e-06 | PPR repeat |
| PPR_1 | PF12854 | 75 - 107 | 2.1e-06 | PPR repeat |
| PPR_2 | PF13041 | 79 - 113 | 1.1e-07 | PPR repeat family |
| PPR | PF01535 | 82 - 109 | 1.9e-06 | PPR repeat |
| PPR_long | PF17177 | 95 - 190 | 2.4e-06 | Pentacotripeptide-repeat region of PRORP |
| PPR_1 | PF12854 | 111 - 142 | 1.8e-11 | PPR repeat |
| PPR_2 | PF13041 | 113 - 163 | 4.4e-16 | PPR repeat family |
| PPR | PF01535 | 116 - 145 | 2e-09 | PPR repeat |
| PPR_1 | PF12854 | 147 - 178 | 6.8e-07 | PPR repeat |
| PPR_3 | PF13812 | 173 - 229 | 6.9e-06 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 182 - 209 | 2.9e-06 | PPR repeat |
| PPR_2 | PF13041 | 185 - 233 | 1.9e-16 | PPR repeat family |
| PPR_1 | PF12854 | 215 - 246 | 1.1e-09 | PPR repeat |
| PPR | PF01535 | 223 - 252 | 9.9e-06 | PPR repeat |
| PPR_2 | PF13041 | 228 - 267 | 1.9e-06 | PPR repeat family |
| PPR_1 | PF12854 | 250 - 283 | 4.1e-06 | PPR repeat |
| PPR_2 | PF13041 | 254 - 296 | 8e-07 | PPR repeat family |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 3 cut(s) | 435, 612, 935 |
| AcoI | YGGCCR | 1 cut(s) | 436 |
| AcsI | RAATTY | 1 cut(s) | 303 |
| AgsI | TTSAA | 8 cut(s) | 40, 113, 310, 455, 581, 608, 716, 839 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 876, 908 |
| AluBI | AGCT | 2 cut(s) | 442, 926 |
| AluI | AGCT | 2 cut(s) | 442, 926 |
| AoxI | GGCC | 2 cut(s) | 436, 478 |
| ApeKI | GCWGC | 1 cut(s) | 923 |
| ApoI | RAATTY | 1 cut(s) | 303 |
| AseI | ATTAAT | 1 cut(s) | 261 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 333, 834 |
| AsuC2I | CCSGG | 1 cut(s) | 598 |
| BanII | GRGCYC | 1 cut(s) | 227 |
| BbvI | GCAGC | 1 cut(s) | 935 |
| BccI | CCATC | 5 cut(s) | 67, 152, 362, 470, 523 |
| BceAI | ACGGC | 1 cut(s) | 522 |
| BclI | TGATCA | 1 cut(s) | 289 |
| BcnI | CCSGG | 1 cut(s) | 598 |
| BfmI | CTRYAG | 1 cut(s) | 864 |
| BglII | AGATCT | 1 cut(s) | 619 |
| BisI | GCNGC | 3 cut(s) | 436, 924, 935 |
| BlsI | GCNGC | 3 cut(s) | 437, 925, 936 |
| Bme1390I | CCNGG | 1 cut(s) | 598 |
| BmiI | GGNNCC | 1 cut(s) | 226 |
| BmrFI | CCNGG | 1 cut(s) | 598 |
| BmsI | GCATC | 4 cut(s) | 411, 859, 881, 910 |
| Bpu10I | CCTNAGC | 1 cut(s) | 825 |
| BpuMI | CCSGG | 1 cut(s) | 598 |
| BsaJI | CCNNGG | 3 cut(s) | 93, 228, 790 |
| BseDI | CCNNGG | 3 cut(s) | 93, 228, 790 |
| BseGI | GGATG | 3 cut(s) | 78, 163, 925 |
| BseMII | CTCAG | 2 cut(s) | 408, 722 |
| BseXI | GCAGC | 1 cut(s) | 935 |
| BshFI | GGCC | 2 cut(s) | 438, 480 |
| BsiSI | CCGG | 1 cut(s) | 597 |
| BsnI | GGCC | 2 cut(s) | 438, 480 |
| Bsp1286I | GDGCHC | 1 cut(s) | 227 |
| Bsp143I | GATC | 3 cut(s) | 205, 289, 619 |
| Bsp19I | CCATGG | 1 cut(s) | 228 |
| BspACI | CCGC | 3 cut(s) | 435, 612, 935 |
| BspANI | GGCC | 2 cut(s) | 438, 480 |
| BspCNI | CTCAG | 2 cut(s) | 409, 723 |
| BspHI | TCATGA | 1 cut(s) | 950 |
| BspLI | GGNNCC | 1 cut(s) | 226 |
| BspMAI | CTGCAG | 1 cut(s) | 868 |
| BssECI | CCNNGG | 3 cut(s) | 93, 228, 790 |
| BssMI | GATC | 3 cut(s) | 205, 289, 619 |
| BssT1I | CCWWGG | 1 cut(s) | 228 |
| Bst4CI | ACNGT | 3 cut(s) | 94, 167, 346 |
| Bst6I | CTCTTC | 1 cut(s) | 629 |
| BstC8I | GCNNGC | 1 cut(s) | 440 |
| BstDEI | CTNAG | 4 cut(s) | 417, 731, 825, 906 |
| BstDSI | CCRYGG | 2 cut(s) | 93, 228 |
| BstF5I | GGATG | 3 cut(s) | 78, 163, 925 |
| BstKTI | GATC | 3 cut(s) | 208, 292, 622 |
| BstMBI | GATC | 3 cut(s) | 205, 289, 619 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 347 |
| BstNSI | RCATGY | 1 cut(s) | 144 |
| BstSCI | CCNGG | 1 cut(s) | 596 |
| BstSFI | CTRYAG | 1 cut(s) | 864 |
| BstV1I | GCAGC | 1 cut(s) | 935 |
| BstX2I | RGATCY | 1 cut(s) | 619 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 94, 544 |
| BstYI | RGATCY | 1 cut(s) | 619 |
| BsuRI | GGCC | 2 cut(s) | 438, 480 |
| BtgI | CCRYGG | 2 cut(s) | 93, 228 |
| BtsCI | GGATG | 3 cut(s) | 78, 163, 925 |
| Cac8I | GCNNGC | 1 cut(s) | 440 |
| CciI | TCATGA | 1 cut(s) | 950 |
| CseI | GACGC | 1 cut(s) | 308 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 346, 381 |
| CviAII | CATG | 6 cut(s) | 11, 103, 141, 229, 819, 951 |
| DdeI | CTNAG | 4 cut(s) | 417, 731, 825, 906 |
| DpnI | GATC | 3 cut(s) | 207, 291, 621 |
| DpnII | GATC | 3 cut(s) | 205, 289, 619 |
| EaeI | YGGCCR | 1 cut(s) | 436 |
| Eam1104I | CTCTTC | 1 cut(s) | 629 |
| EarI | CTCTTC | 1 cut(s) | 629 |
| Eco130I | CCWWGG | 1 cut(s) | 228 |
| Eco24I | GRGCYC | 1 cut(s) | 227 |
| EcoT14I | CCWWGG | 1 cut(s) | 228 |
| EcoT22I | ATGCAT | 1 cut(s) | 874 |
| EcoT38I | GRGCYC | 1 cut(s) | 227 |
| ErhI | CCWWGG | 1 cut(s) | 228 |
| FaeI | CATG | 6 cut(s) | 14, 106, 144, 232, 822, 954 |
| FatI | CATG | 6 cut(s) | 10, 102, 140, 228, 818, 950 |
| FbaI | TGATCA | 1 cut(s) | 289 |
| Fnu4HI | GCNGC | 3 cut(s) | 436, 924, 935 |
| FokI | GGATG | 3 cut(s) | 85, 170, 932 |
| FriOI | GRGCYC | 1 cut(s) | 227 |
| Fsp4HI | GCNGC | 3 cut(s) | 436, 924, 935 |
| GluI | GCNGC | 3 cut(s) | 436, 924, 935 |
| HaeIII | GGCC | 2 cut(s) | 438, 480 |
| HapII | CCGG | 1 cut(s) | 597 |
| HgaI | GACGC | 1 cut(s) | 308 |
| Hin1II | CATG | 6 cut(s) | 14, 106, 144, 232, 822, 954 |
| HincII | GTYRAC | 1 cut(s) | 100 |
| HindII | GTYRAC | 1 cut(s) | 100 |
| HinfI | GANTC | 5 cut(s) | 7, 109, 390, 608, 947 |
| HpaII | CCGG | 1 cut(s) | 597 |
| Hpy166II | GTNNAC | 3 cut(s) | 100, 565, 689 |
| Hpy188I | TCNGA | 2 cut(s) | 418, 791 |
| Hpy188III | TCNNGA | 3 cut(s) | 446, 839, 951 |
| Hpy8I | GTNNAC | 3 cut(s) | 100, 565, 689 |
| Hpy99I | CGWCG | 2 cut(s) | 177, 324 |
| HpyAV | CCTTC | 3 cut(s) | 62, 277, 575 |
| HpyCH4III | ACNGT | 3 cut(s) | 94, 167, 346 |
| HpyCH4V | TGCA | 8 cut(s) | 144, 378, 424, 591, 771, 866, 872, 923 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 347 |
| HpyF3I | CTNAG | 4 cut(s) | 417, 731, 825, 906 |
| Hsp92II | CATG | 6 cut(s) | 14, 106, 144, 232, 822, 954 |
| Ksp22I | TGATCA | 1 cut(s) | 289 |
| Kzo9I | GATC | 3 cut(s) | 205, 289, 619 |
| LmnI | GCTCC | 1 cut(s) | 230 |
| LpnPI | CCDG | 9 cut(s) | 141, 278, 351, 452, 459, 494, 506, 610, 669 |
| Lsp1109I | GCAGC | 1 cut(s) | 935 |
| LweI | GCATC | 4 cut(s) | 411, 859, 881, 910 |
| MaeIII | GTNAC | 4 cut(s) | 31, 161, 248, 485 |
| MalI | GATC | 3 cut(s) | 207, 291, 621 |
| MboI | GATC | 3 cut(s) | 205, 289, 619 |
| MboII | GAAGA | 1 cut(s) | 616 |
| MflI | RGATCY | 1 cut(s) | 619 |
| MhlI | GDGCHC | 1 cut(s) | 227 |
| MluCI | AATT | 7 cut(s) | 303, 515, 542, 603, 711, 725, 884 |
| MlyI | GAGTC | 1 cut(s) | 16 |
| MnlI | CCTC | 3 cut(s) | 268, 737, 785 |
| Mph1103I | ATGCAT | 1 cut(s) | 874 |
| MroXI | GAANNNNTTC | 2 cut(s) | 333, 834 |
| MseI | TTAA | 6 cut(s) | 234, 261, 552, 707, 800, 941 |
| MslI | CAYNNNNRTG | 1 cut(s) | 677 |
| MspA1I | CMGCKG | 1 cut(s) | 937 |
| MspI | CCGG | 1 cut(s) | 597 |
| MspR9I | CCNGG | 1 cut(s) | 598 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 347 |
| NciI | CCSGG | 1 cut(s) | 598 |
| NcoI | CCATGG | 1 cut(s) | 228 |
| NdeII | GATC | 3 cut(s) | 205, 289, 619 |
| NlaIII | CATG | 6 cut(s) | 14, 106, 144, 232, 822, 954 |
| NlaIV | GGNNCC | 1 cut(s) | 226 |
| NmuCI | GTSAC | 1 cut(s) | 31 |
| NsiI | ATGCAT | 1 cut(s) | 874 |
| NspI | RCATGY | 1 cut(s) | 144 |
| PagI | TCATGA | 1 cut(s) | 950 |
| PdmI | GAANNNNTTC | 2 cut(s) | 333, 834 |
| PfeI | GAWTC | 4 cut(s) | 109, 390, 608, 947 |
| PflFI | GACNNNGTC | 1 cut(s) | 693 |
| PkrI | GCNGC | 3 cut(s) | 437, 925, 936 |
| PleI | GAGTC | 1 cut(s) | 15 |
| PpsI | GAGTC | 1 cut(s) | 15 |
| PshBI | ATTAAT | 1 cut(s) | 261 |
| PspN4I | GGNNCC | 1 cut(s) | 226 |
| PstI | CTGCAG | 1 cut(s) | 868 |
| PsuI | RGATCY | 1 cut(s) | 619 |
| PsyI | GACNNNGTC | 1 cut(s) | 693 |
| RseI | CAYNNNNRTG | 1 cut(s) | 677 |
| SaqAI | TTAA | 6 cut(s) | 234, 261, 552, 707, 800, 941 |
| SatI | GCNGC | 3 cut(s) | 436, 924, 935 |
| Sau3AI | GATC | 3 cut(s) | 205, 289, 619 |
| SchI | GAGTC | 1 cut(s) | 16 |
| ScrFI | CCNGG | 1 cut(s) | 598 |
| SduI | GDGCHC | 1 cut(s) | 227 |
| SetI | ASST | 6 cut(s) | 288, 430, 444, 586, 776, 928 |
| SfaNI | GCATC | 4 cut(s) | 411, 859, 881, 910 |
| SfcI | CTRYAG | 1 cut(s) | 864 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 677 |
| Sse9I | AATT | 7 cut(s) | 303, 515, 542, 603, 711, 725, 884 |
| SsiI | CCGC | 3 cut(s) | 435, 612, 935 |
| SspI | AATATT | 1 cut(s) | 556 |
| StyD4I | CCNGG | 1 cut(s) | 596 |
| StyI | CCWWGG | 1 cut(s) | 228 |
| TaaI | ACNGT | 3 cut(s) | 94, 167, 346 |
| TasI | AATT | 7 cut(s) | 303, 515, 542, 603, 711, 725, 884 |
| TauI | GCSGC | 2 cut(s) | 438, 937 |
| TfiI | GAWTC | 4 cut(s) | 109, 390, 608, 947 |
| Tru1I | TTAA | 6 cut(s) | 234, 261, 552, 707, 800, 941 |
| Tru9I | TTAA | 6 cut(s) | 234, 261, 552, 707, 800, 941 |
| TseFI | GTSAC | 1 cut(s) | 31 |
| TseI | GCWGC | 1 cut(s) | 923 |
| Tsp45I | GTSAC | 1 cut(s) | 31 |
| TspDTI | ATGAA | 1 cut(s) | 939 |
| Tth111I | GACNNNGTC | 1 cut(s) | 693 |
| VspI | ATTAAT | 1 cut(s) | 261 |
| XapI | RAATTY | 1 cut(s) | 303 |
| XceI | RCATGY | 1 cut(s) | 144 |
| XmnI | GAANNNNTTC | 2 cut(s) | 333, 834 |
| Zsp2I | ATGCAT | 1 cut(s) | 874 |