Pentatricopeptide repeat-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PPR_3 | PF13812 | 1 - 55 | 1.4e-07 | Pentatricopeptide repeat domain |
| PPR_long | PF17177 | 4 - 86 | 4.1e-06 | Pentacotripeptide-repeat region of PRORP |
| PPR_1 | PF12854 | 5 - 37 | 2.9e-15 | PPR repeat |
| PPR_2 | PF13041 | 8 - 56 | 5.6e-19 | PPR repeat family |
| TPR_24 | PF23276 | 10 - 103 | 1.8e-12 | Fungal tetratrico peptide repeats |
| PPR | PF01535 | 11 - 40 | 8.9e-10 | PPR repeat |
| PPR_1 | PF12854 | 40 - 72 | 3e-06 | PPR repeat |
| PPR_1 | PF12854 | 76 - 103 | 5.8e-07 | PPR repeat |
| PPR_2 | PF13041 | 79 - 127 | 8.6e-17 | PPR repeat family |
| PPR_3 | PF13812 | 106 - 160 | 1.6e-08 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 109 - 142 | 1.4e-12 | PPR repeat |
| PPR | PF01535 | 117 - 145 | 2.7e-07 | PPR repeat |
| PPR_2 | PF13041 | 121 - 161 | 9.3e-10 | PPR repeat family |
| PPR_1 | PF12854 | 144 - 176 | 8.8e-07 | PPR repeat |
| PPR_2 | PF13041 | 148 - 195 | 9.8e-10 | PPR repeat family |
| PPR | PF01535 | 152 - 181 | 4.8e-06 | PPR repeat |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 1 cut(s) | 596 |
| AcoI | YGGCCR | 1 cut(s) | 118 |
| AcsI | RAATTY | 1 cut(s) | 406 |
| AfaI | GTAC | 1 cut(s) | 454 |
| AgsI | TTSAA | 3 cut(s) | 137, 263, 521 |
| AjnI | CCWGG | 1 cut(s) | 604 |
| AluBI | AGCT | 2 cut(s) | 94, 278 |
| AluI | AGCT | 2 cut(s) | 94, 278 |
| Alw21I | GWGCWC | 1 cut(s) | 275 |
| Alw26I | GTCTC | 2 cut(s) | 488, 505 |
| Alw44I | GTGCAC | 1 cut(s) | 271 |
| AlwI | GGATC | 1 cut(s) | 596 |
| AoxI | GGCC | 2 cut(s) | 118, 385 |
| ApaLI | GTGCAC | 1 cut(s) | 271 |
| ApoI | RAATTY | 1 cut(s) | 406 |
| AxyI | CCTNAGG | 1 cut(s) | 186 |
| BaeGI | GKGCMC | 1 cut(s) | 275 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 436, 469 |
| BalI | TGGCCA | 1 cut(s) | 120 |
| Bbv12I | GWGCWC | 1 cut(s) | 275 |
| BccI | CCATC | 1 cut(s) | 47 |
| BciT130I | CCWGG | 1 cut(s) | 606 |
| BclI | TGATCA | 1 cut(s) | 363 |
| BcoDI | GTCTC | 2 cut(s) | 488, 505 |
| BfaI | CTAG | 1 cut(s) | 233 |
| BfmI | CTRYAG | 1 cut(s) | 546 |
| BglII | AGATCT | 1 cut(s) | 301 |
| Bme1390I | CCNGG | 1 cut(s) | 606 |
| BmrFI | CCNGG | 1 cut(s) | 606 |
| BmsI | GCATC | 3 cut(s) | 96, 148, 541 |
| BpmI | CTGGAG | 1 cut(s) | 300 |
| BpuEI | CTTGAG | 1 cut(s) | 551 |
| BsaBI | GATNNNNATC | 1 cut(s) | 362 |
| BsaJI | CCNNGG | 1 cut(s) | 472 |
| Bse21I | CCTNAGG | 1 cut(s) | 186 |
| Bse3DI | GCAATG | 1 cut(s) | 617 |
| Bse8I | GATNNNNATC | 1 cut(s) | 362 |
| BseBI | CCWGG | 1 cut(s) | 606 |
| BseDI | CCNNGG | 1 cut(s) | 472 |
| BseGI | GGATG | 1 cut(s) | 124 |
| BseJI | GATNNNNATC | 1 cut(s) | 362 |
| BseMI | GCAATG | 1 cut(s) | 617 |
| BseMII | CTCAG | 1 cut(s) | 116 |
| BseSI | GKGCMC | 1 cut(s) | 275 |
| BshFI | GGCC | 2 cut(s) | 120, 387 |
| BsiHKAI | GWGCWC | 1 cut(s) | 275 |
| BslFI | GGGAC | 1 cut(s) | 5 |
| BsmAI | GTCTC | 2 cut(s) | 488, 505 |
| BsmFI | GGGAC | 1 cut(s) | 5 |
| BsnI | GGCC | 2 cut(s) | 120, 387 |
| Bsp1286I | GDGCHC | 1 cut(s) | 275 |
| Bsp143I | GATC | 3 cut(s) | 301, 363, 601 |
| BspANI | GGCC | 2 cut(s) | 120, 387 |
| BspCNI | CTCAG | 1 cut(s) | 115 |
| BspMAI | CTGCAG | 1 cut(s) | 550 |
| BspPI | GGATC | 1 cut(s) | 596 |
| BspQI | GCTCTTC | 1 cut(s) | 442 |
| BsrDI | GCAATG | 1 cut(s) | 617 |
| BssECI | CCNNGG | 1 cut(s) | 472 |
| BssMI | GATC | 3 cut(s) | 301, 363, 601 |
| Bst2UI | CCWGG | 1 cut(s) | 606 |
| Bst4CI | ACNGT | 1 cut(s) | 31 |
| Bst6I | CTCTTC | 2 cut(s) | 311, 442 |
| BstDEI | CTNAG | 3 cut(s) | 102, 186, 413 |
| BstF5I | GGATG | 1 cut(s) | 124 |
| BstKTI | GATC | 3 cut(s) | 304, 366, 604 |
| BstMAI | GTCTC | 2 cut(s) | 488, 505 |
| BstMBI | GATC | 3 cut(s) | 301, 363, 601 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 384 |
| BstNI | CCWGG | 1 cut(s) | 606 |
| BstSCI | CCNGG | 1 cut(s) | 604 |
| BstSFI | CTRYAG | 1 cut(s) | 546 |
| BstSLI | GKGCMC | 1 cut(s) | 275 |
| BstX2I | RGATCY | 2 cut(s) | 301, 601 |
| BstYI | RGATCY | 2 cut(s) | 301, 601 |
| Bsu36I | CCTNAGG | 1 cut(s) | 186 |
| BsuRI | GGCC | 2 cut(s) | 120, 387 |
| BtsCI | GGATG | 1 cut(s) | 124 |
| BtsIMutI | CAGTG | 1 cut(s) | 373 |
| CseI | GACGC | 1 cut(s) | 543 |
| Csp6I | GTAC | 1 cut(s) | 453 |
| CviJI | RGCY | 8 cut(s) | 94, 114, 120, 278, 337, 387, 435, 506 |
| CviKI_1 | RGCY | 8 cut(s) | 94, 114, 120, 278, 337, 387, 435, 506 |
| CviQI | GTAC | 1 cut(s) | 453 |
| DdeI | CTNAG | 3 cut(s) | 102, 186, 413 |
| DpnI | GATC | 3 cut(s) | 303, 365, 603 |
| DpnII | GATC | 3 cut(s) | 301, 363, 601 |
| EaeI | YGGCCR | 1 cut(s) | 118 |
| Eam1104I | CTCTTC | 2 cut(s) | 311, 442 |
| EarI | CTCTTC | 2 cut(s) | 311, 442 |
| Eco147I | AGGCCT | 1 cut(s) | 387 |
| Eco81I | CCTNAGG | 1 cut(s) | 186 |
| EcoRII | CCWGG | 1 cut(s) | 604 |
| FaiI | YATR | 8 cut(s) | 11, 39, 117, 144, 166, 459, 509, 563 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 513, 545 |
| FaqI | GGGAC | 1 cut(s) | 5 |
| FbaI | TGATCA | 1 cut(s) | 363 |
| FokI | GGATG | 1 cut(s) | 111 |
| FspBI | CTAG | 1 cut(s) | 233 |
| GsuI | CTGGAG | 1 cut(s) | 300 |
| HaeIII | GGCC | 2 cut(s) | 120, 387 |
| HgaI | GACGC | 1 cut(s) | 543 |
| HincII | GTYRAC | 1 cut(s) | 558 |
| HindII | GTYRAC | 1 cut(s) | 558 |
| HinfI | GANTC | 1 cut(s) | 629 |
| Hpy166II | GTNNAC | 3 cut(s) | 273, 371, 558 |
| Hpy188I | TCNGA | 3 cut(s) | 105, 473, 638 |
| Hpy188III | TCNNGA | 1 cut(s) | 521 |
| Hpy8I | GTNNAC | 3 cut(s) | 273, 371, 558 |
| Hpy99I | CGWCG | 1 cut(s) | 9 |
| HpyAV | CCTTC | 2 cut(s) | 208, 257 |
| HpyCH4III | ACNGT | 1 cut(s) | 31 |
| HpyCH4V | TGCA | 6 cut(s) | 63, 109, 273, 296, 378, 548 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 384 |
| HpyF3I | CTNAG | 3 cut(s) | 102, 186, 413 |
| Ksp22I | TGATCA | 1 cut(s) | 363 |
| Kzo9I | GATC | 3 cut(s) | 301, 363, 601 |
| LguI | GCTCTTC | 1 cut(s) | 442 |
| LpnPI | CCDG | 5 cut(s) | 188, 264, 351, 591, 618 |
| LweI | GCATC | 3 cut(s) | 96, 148, 541 |
| MaeI | CTAG | 1 cut(s) | 233 |
| MaeIII | GTNAC | 1 cut(s) | 31 |
| MalI | GATC | 3 cut(s) | 303, 365, 603 |
| MboI | GATC | 3 cut(s) | 301, 363, 601 |
| MboII | GAAGA | 2 cut(s) | 298, 429 |
| MflI | RGATCY | 2 cut(s) | 301, 601 |
| MhlI | GDGCHC | 1 cut(s) | 275 |
| MlsI | TGGCCA | 1 cut(s) | 120 |
| MluCI | AATT | 4 cut(s) | 197, 406, 465, 566 |
| MluNI | TGGCCA | 1 cut(s) | 120 |
| MmeI | TCCRAC | 1 cut(s) | 207 |
| MnlI | CCTC | 5 cut(s) | 76, 377, 410, 467, 528 |
| Mox20I | TGGCCA | 1 cut(s) | 120 |
| MscI | TGGCCA | 1 cut(s) | 120 |
| MseI | TTAA | 1 cut(s) | 624 |
| MslI | CAYNNNNRTG | 1 cut(s) | 129 |
| Msp20I | TGGCCA | 1 cut(s) | 120 |
| MspA1I | CMGCKG | 1 cut(s) | 278 |
| MspR9I | CCNGG | 1 cut(s) | 606 |
| MvaI | CCWGG | 1 cut(s) | 606 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 384 |
| NdeII | GATC | 3 cut(s) | 301, 363, 601 |
| PceI | AGGCCT | 1 cut(s) | 387 |
| PciSI | GCTCTTC | 1 cut(s) | 442 |
| PfeI | GAWTC | 1 cut(s) | 629 |
| Psp6I | CCWGG | 1 cut(s) | 604 |
| PspGI | CCWGG | 1 cut(s) | 604 |
| PstI | CTGCAG | 1 cut(s) | 550 |
| PsuI | RGATCY | 2 cut(s) | 301, 601 |
| PvuII | CAGCTG | 1 cut(s) | 278 |
| RsaI | GTAC | 1 cut(s) | 454 |
| RsaNI | GTAC | 1 cut(s) | 453 |
| RseI | CAYNNNNRTG | 1 cut(s) | 129 |
| SapI | GCTCTTC | 1 cut(s) | 442 |
| SaqAI | TTAA | 1 cut(s) | 624 |
| Sau3AI | GATC | 3 cut(s) | 301, 363, 601 |
| ScrFI | CCNGG | 1 cut(s) | 606 |
| SduI | GDGCHC | 1 cut(s) | 275 |
| SetI | ASST | 5 cut(s) | 96, 268, 280, 458, 478 |
| SfaNI | GCATC | 3 cut(s) | 96, 148, 541 |
| SfcI | CTRYAG | 1 cut(s) | 546 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 129 |
| SmlI | CTYRAG | 1 cut(s) | 530 |
| SmoI | CTYRAG | 1 cut(s) | 530 |
| Sse9I | AATT | 4 cut(s) | 197, 406, 465, 566 |
| SseBI | AGGCCT | 1 cut(s) | 387 |
| SspI | AATATT | 1 cut(s) | 253 |
| SspMI | CTAG | 1 cut(s) | 233 |
| StuI | AGGCCT | 1 cut(s) | 387 |
| StyD4I | CCNGG | 1 cut(s) | 604 |
| TaaI | ACNGT | 1 cut(s) | 31 |
| TasI | AATT | 4 cut(s) | 197, 406, 465, 566 |
| TfiI | GAWTC | 1 cut(s) | 629 |
| Tru1I | TTAA | 1 cut(s) | 624 |
| Tru9I | TTAA | 1 cut(s) | 624 |
| TscAI | CASTG | 1 cut(s) | 373 |
| TspDTI | ATGAA | 1 cut(s) | 227 |
| TspRI | CASTG | 1 cut(s) | 373 |
| VneI | GTGCAC | 1 cut(s) | 271 |
| XapI | RAATTY | 1 cut(s) | 406 |
| XspI | CTAG | 1 cut(s) | 233 |