Pentatricopeptide repeat-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PPR_2 | PF13041 | 41 - 69 | 3.4e-06 | PPR repeat family |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 364 |
| AccII | CGCG | 1 cut(s) | 22 |
| AccIII | TCCGGA | 1 cut(s) | 249 |
| AciI | CCGC | 3 cut(s) | 22, 287, 295 |
| AclWI | GGATC | 2 cut(s) | 47, 121 |
| AcoI | YGGCCR | 1 cut(s) | 462 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 359 |
| AgsI | TTSAA | 1 cut(s) | 139 |
| AjnI | CCWGG | 1 cut(s) | 534 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 458, 490 |
| AluBI | AGCT | 1 cut(s) | 493 |
| AluI | AGCT | 1 cut(s) | 493 |
| AlwI | GGATC | 2 cut(s) | 47, 121 |
| Aor13HI | TCCGGA | 1 cut(s) | 249 |
| AoxI | GGCC | 2 cut(s) | 462, 479 |
| ApeKI | GCWGC | 1 cut(s) | 490 |
| AspLEI | GCGC | 2 cut(s) | 22, 227 |
| AspS9I | GGNCC | 1 cut(s) | 506 |
| AsuHPI | GGTGA | 3 cut(s) | 324, 524, 558 |
| AvaII | GGWCC | 1 cut(s) | 506 |
| BalI | TGGCCA | 1 cut(s) | 464 |
| BanII | GRGCYC | 1 cut(s) | 74 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 396, 428 |
| BbvI | GCAGC | 1 cut(s) | 502 |
| BciT130I | CCWGG | 1 cut(s) | 536 |
| BclI | TGATCA | 1 cut(s) | 105 |
| BfmI | CTRYAG | 1 cut(s) | 426 |
| BisI | GCNGC | 2 cut(s) | 23, 491 |
| BlsI | GCNGC | 2 cut(s) | 24, 492 |
| Bme1390I | CCNGG | 1 cut(s) | 536 |
| Bme18I | GGWCC | 1 cut(s) | 506 |
| BmgT120I | GGNCC | 1 cut(s) | 506 |
| BmiI | GGNNCC | 2 cut(s) | 73, 507 |
| BmrFI | CCNGG | 1 cut(s) | 536 |
| BmsI | GCATC | 1 cut(s) | 301 |
| BoxI | GACNNNNGTC | 1 cut(s) | 204 |
| Bpu10I | CCTNAGC | 1 cut(s) | 299 |
| BsaJI | CCNNGG | 2 cut(s) | 66, 75 |
| BsaWI | WCCGGW | 1 cut(s) | 249 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 359 |
| Bse118I | RCCGGY | 1 cut(s) | 270 |
| Bse3DI | GCAATG | 1 cut(s) | 282 |
| BseAI | TCCGGA | 1 cut(s) | 249 |
| BseBI | CCWGG | 1 cut(s) | 536 |
| BseDI | CCNNGG | 2 cut(s) | 66, 75 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 359 |
| BseMI | GCAATG | 1 cut(s) | 282 |
| BseMII | CTCAG | 2 cut(s) | 477, 524 |
| BseXI | GCAGC | 1 cut(s) | 502 |
| Bsh1236I | CGCG | 1 cut(s) | 22 |
| BshFI | GGCC | 2 cut(s) | 464, 481 |
| BsiSI | CCGG | 2 cut(s) | 250, 271 |
| BslFI | GGGAC | 1 cut(s) | 452 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 359 |
| BsmFI | GGGAC | 1 cut(s) | 452 |
| BsnI | GGCC | 2 cut(s) | 464, 481 |
| Bsp1286I | GDGCHC | 1 cut(s) | 74 |
| Bsp13I | TCCGGA | 1 cut(s) | 249 |
| Bsp143I | GATC | 3 cut(s) | 52, 105, 113 |
| Bsp19I | CCATGG | 1 cut(s) | 75 |
| BspACI | CCGC | 3 cut(s) | 22, 287, 295 |
| BspANI | GGCC | 2 cut(s) | 464, 481 |
| BspCNI | CTCAG | 2 cut(s) | 478, 523 |
| BspEI | TCCGGA | 1 cut(s) | 249 |
| BspFNI | CGCG | 1 cut(s) | 22 |
| BspLI | GGNNCC | 2 cut(s) | 73, 507 |
| BspPI | GGATC | 2 cut(s) | 47, 121 |
| BsrDI | GCAATG | 1 cut(s) | 282 |
| BsrFI | RCCGGY | 1 cut(s) | 270 |
| BssAI | RCCGGY | 1 cut(s) | 270 |
| BssECI | CCNNGG | 2 cut(s) | 66, 75 |
| BssMI | GATC | 3 cut(s) | 52, 105, 113 |
| BssT1I | CCWWGG | 2 cut(s) | 66, 75 |
| Bst2UI | CCWGG | 1 cut(s) | 536 |
| Bst4CI | ACNGT | 3 cut(s) | 8, 417, 557 |
| BstDEI | CTNAG | 4 cut(s) | 209, 299, 486, 510 |
| BstDSI | CCRYGG | 1 cut(s) | 75 |
| BstFNI | CGCG | 1 cut(s) | 22 |
| BstHHI | GCGC | 2 cut(s) | 22, 227 |
| BstKTI | GATC | 3 cut(s) | 55, 108, 116 |
| BstMBI | GATC | 3 cut(s) | 52, 105, 113 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 470, 487 |
| BstNI | CCWGG | 1 cut(s) | 536 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 204 |
| BstSCI | CCNGG | 1 cut(s) | 534 |
| BstSFI | CTRYAG | 1 cut(s) | 426 |
| BstUI | CGCG | 1 cut(s) | 22 |
| BstV1I | GCAGC | 1 cut(s) | 502 |
| BstX2I | RGATCY | 1 cut(s) | 113 |
| BstYI | RGATCY | 1 cut(s) | 113 |
| BsuRI | GGCC | 2 cut(s) | 464, 481 |
| BtgI | CCRYGG | 1 cut(s) | 75 |
| CfoI | GCGC | 2 cut(s) | 22, 227 |
| Cfr10I | RCCGGY | 1 cut(s) | 270 |
| Cfr13I | GGNCC | 1 cut(s) | 506 |
| CseI | GACGC | 1 cut(s) | 137 |
| CsiI | ACCWGGT | 1 cut(s) | 534 |
| CviAII | CATG | 2 cut(s) | 76, 445 |
| CviJI | RGCY | 6 cut(s) | 72, 125, 303, 464, 481, 493 |
| CviKI_1 | RGCY | 6 cut(s) | 72, 125, 303, 464, 481, 493 |
| DdeI | CTNAG | 4 cut(s) | 209, 299, 486, 510 |
| DpnI | GATC | 3 cut(s) | 54, 107, 115 |
| DpnII | GATC | 3 cut(s) | 52, 105, 113 |
| EaeI | YGGCCR | 1 cut(s) | 462 |
| EciI | GGCGGA | 1 cut(s) | 284 |
| Eco130I | CCWWGG | 2 cut(s) | 66, 75 |
| Eco24I | GRGCYC | 1 cut(s) | 74 |
| Eco47I | GGWCC | 1 cut(s) | 506 |
| EcoO109I | RGGNCCY | 1 cut(s) | 506 |
| EcoRII | CCWGG | 1 cut(s) | 534 |
| EcoT14I | CCWWGG | 2 cut(s) | 66, 75 |
| EcoT38I | GRGCYC | 1 cut(s) | 74 |
| ErhI | CCWWGG | 2 cut(s) | 66, 75 |
| FaeI | CATG | 2 cut(s) | 79, 448 |
| FaqI | GGGAC | 1 cut(s) | 452 |
| FatI | CATG | 2 cut(s) | 75, 444 |
| FauI | CCCGC | 1 cut(s) | 280 |
| FbaI | TGATCA | 1 cut(s) | 105 |
| FblI | GTMKAC | 1 cut(s) | 364 |
| Fnu4HI | GCNGC | 2 cut(s) | 23, 491 |
| FriOI | GRGCYC | 1 cut(s) | 74 |
| Fsp4HI | GCNGC | 2 cut(s) | 23, 491 |
| GlaI | GCGC | 2 cut(s) | 21, 226 |
| GluI | GCNGC | 2 cut(s) | 23, 491 |
| HaeIII | GGCC | 2 cut(s) | 464, 481 |
| HapII | CCGG | 2 cut(s) | 250, 271 |
| HgaI | GACGC | 1 cut(s) | 137 |
| HhaI | GCGC | 2 cut(s) | 22, 227 |
| Hin1II | CATG | 2 cut(s) | 79, 448 |
| Hin6I | GCGC | 2 cut(s) | 20, 225 |
| HinP1I | GCGC | 2 cut(s) | 20, 225 |
| HinfI | GANTC | 4 cut(s) | 278, 291, 422, 563 |
| HpaII | CCGG | 2 cut(s) | 250, 271 |
| HphI | GGTGA | 3 cut(s) | 324, 524, 558 |
| Hpy166II | GTNNAC | 1 cut(s) | 365 |
| Hpy188I | TCNGA | 4 cut(s) | 57, 457, 487, 513 |
| Hpy188III | TCNNGA | 1 cut(s) | 250 |
| Hpy8I | GTNNAC | 1 cut(s) | 365 |
| Hpy99I | CGWCG | 1 cut(s) | 153 |
| HpyAV | CCTTC | 6 cut(s) | 386, 392, 429, 484, 492, 544 |
| HpyCH4III | ACNGT | 3 cut(s) | 8, 417, 557 |
| HpyCH4V | TGCA | 3 cut(s) | 120, 314, 577 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 470, 487 |
| HpyF3I | CTNAG | 4 cut(s) | 209, 299, 486, 510 |
| Hsp92II | CATG | 2 cut(s) | 79, 448 |
| HspAI | GCGC | 2 cut(s) | 20, 225 |
| Kpn2I | TCCGGA | 1 cut(s) | 249 |
| Ksp22I | TGATCA | 1 cut(s) | 105 |
| Kzo9I | GATC | 3 cut(s) | 52, 105, 113 |
| LmnI | GCTCC | 1 cut(s) | 77 |
| LpnPI | CCDG | 5 cut(s) | 263, 284, 463, 521, 548 |
| Lsp1109I | GCAGC | 1 cut(s) | 502 |
| LweI | GCATC | 1 cut(s) | 301 |
| MabI | ACCWGGT | 1 cut(s) | 534 |
| MaeIII | GTNAC | 2 cut(s) | 8, 275 |
| MalI | GATC | 3 cut(s) | 54, 107, 115 |
| MboI | GATC | 3 cut(s) | 52, 105, 113 |
| MboII | GAAGA | 2 cut(s) | 321, 416 |
| MfeI | CAATTG | 1 cut(s) | 202 |
| MflI | RGATCY | 1 cut(s) | 113 |
| MhlI | GDGCHC | 1 cut(s) | 74 |
| MlsI | TGGCCA | 1 cut(s) | 464 |
| MluCI | AATT | 6 cut(s) | 174, 202, 336, 368, 458, 466 |
| MluNI | TGGCCA | 1 cut(s) | 464 |
| MlyI | GAGTC | 2 cut(s) | 272, 300 |
| MnlI | CCTC | 5 cut(s) | 26, 252, 256, 257, 519 |
| Mox20I | TGGCCA | 1 cut(s) | 464 |
| MroI | TCCGGA | 1 cut(s) | 249 |
| MscI | TGGCCA | 1 cut(s) | 464 |
| MseI | TTAA | 1 cut(s) | 542 |
| Msp20I | TGGCCA | 1 cut(s) | 464 |
| MspI | CCGG | 2 cut(s) | 250, 271 |
| MspR9I | CCNGG | 1 cut(s) | 536 |
| MunI | CAATTG | 1 cut(s) | 202 |
| MvaI | CCWGG | 1 cut(s) | 536 |
| MvnI | CGCG | 1 cut(s) | 22 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 470, 487 |
| NcoI | CCATGG | 1 cut(s) | 75 |
| NdeII | GATC | 3 cut(s) | 52, 105, 113 |
| NlaIII | CATG | 2 cut(s) | 79, 448 |
| NlaIV | GGNNCC | 2 cut(s) | 73, 507 |
| NmuCI | GTSAC | 1 cut(s) | 275 |
| PfeI | GAWTC | 2 cut(s) | 422, 563 |
| PkrI | GCNGC | 2 cut(s) | 24, 492 |
| PleI | GAGTC | 2 cut(s) | 272, 299 |
| PpsI | GAGTC | 2 cut(s) | 272, 299 |
| PpuMI | RGGWCCY | 1 cut(s) | 506 |
| PshAI | GACNNNNGTC | 1 cut(s) | 204 |
| Psp5II | RGGWCCY | 1 cut(s) | 506 |
| Psp6I | CCWGG | 1 cut(s) | 534 |
| PspGI | CCWGG | 1 cut(s) | 534 |
| PspN4I | GGNNCC | 2 cut(s) | 73, 507 |
| PspPI | GGNCC | 1 cut(s) | 506 |
| PspPPI | RGGWCCY | 1 cut(s) | 506 |
| PsuI | RGATCY | 1 cut(s) | 113 |
| SaqAI | TTAA | 1 cut(s) | 542 |
| SatI | GCNGC | 2 cut(s) | 23, 491 |
| Sau3AI | GATC | 3 cut(s) | 52, 105, 113 |
| Sau96I | GGNCC | 1 cut(s) | 506 |
| SchI | GAGTC | 2 cut(s) | 272, 300 |
| ScrFI | CCNGG | 1 cut(s) | 536 |
| SduI | GDGCHC | 1 cut(s) | 74 |
| SetI | ASST | 3 cut(s) | 349, 495, 537 |
| SexAI | ACCWGGT | 1 cut(s) | 534 |
| SfaNI | GCATC | 1 cut(s) | 301 |
| SfcI | CTRYAG | 1 cut(s) | 426 |
| SinI | GGWCC | 1 cut(s) | 506 |
| Sse9I | AATT | 6 cut(s) | 174, 202, 336, 368, 458, 466 |
| SsiI | CCGC | 3 cut(s) | 22, 287, 295 |
| StyD4I | CCNGG | 1 cut(s) | 534 |
| StyI | CCWWGG | 2 cut(s) | 66, 75 |
| TaaI | ACNGT | 3 cut(s) | 8, 417, 557 |
| TasI | AATT | 6 cut(s) | 174, 202, 336, 368, 458, 466 |
| TauI | GCSGC | 1 cut(s) | 25 |
| TfiI | GAWTC | 2 cut(s) | 422, 563 |
| Tru1I | TTAA | 1 cut(s) | 542 |
| Tru9I | TTAA | 1 cut(s) | 542 |
| TseFI | GTSAC | 1 cut(s) | 275 |
| TseI | GCWGC | 1 cut(s) | 490 |
| Tsp45I | GTSAC | 1 cut(s) | 275 |
| TspDTI | ATGAA | 4 cut(s) | 77, 170, 311, 513 |
| TspGWI | ACGGA | 1 cut(s) | 126 |
| VpaK11BI | GGWCC | 1 cut(s) | 506 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 73 |
| XmiI | GTMKAC | 1 cut(s) | 364 |