Pentatricopeptide repeat-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PPR_2 | PF13041 | 7 - 36 | 1.2e-09 | PPR repeat family |
| PPR_long | PF17177 | 7 - 121 | 1.8e-10 | Pentacotripeptide-repeat region of PRORP |
| PPR_3 | PF13812 | 11 - 69 | 4.7e-12 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 18 - 51 | 2.7e-12 | PPR repeat |
| PPR_2 | PF13041 | 22 - 71 | 2.4e-18 | PPR repeat family |
| PPR | PF01535 | 25 - 55 | 5e-08 | PPR repeat |
| MRP-S27 | PF10037 | 27 - 89 | 1.7e-07 | Mitochondrial 28S ribosomal protein S27 |
| PPR_1 | PF12854 | 53 - 85 | 8.9e-09 | PPR repeat |
| PPR_2 | PF13041 | 61 - 105 | 1.2e-12 | PPR repeat family |
| PPR_3 | PF13812 | 81 - 139 | 8.4e-06 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 89 - 120 | 4.8e-09 | PPR repeat |
| PPR_2 | PF13041 | 94 - 141 | 1.9e-12 | PPR repeat family |
| PPR | PF01535 | 95 - 124 | 2.7e-06 | PPR repeat |
| PPR_long | PF17177 | 113 - 248 | 8.8e-08 | Pentacotripeptide-repeat region of PRORP |
| PPR_1 | PF12854 | 123 - 155 | 1.5e-09 | PPR repeat |
| PPR_2 | PF13041 | 128 - 176 | 1.1e-19 | PPR repeat family |
| PPR | PF01535 | 131 - 160 | 1.5e-09 | PPR repeat |
| PPR_3 | PF13812 | 151 - 206 | 5e-09 | Pentatricopeptide repeat domain |
| TPR_24 | PF23276 | 155 - 258 | 8.7e-06 | Fungal tetratrico peptide repeats |
| PPR_1 | PF12854 | 158 - 191 | 1.9e-13 | PPR repeat |
| PPR_2 | PF13041 | 162 - 210 | 1.7e-17 | PPR repeat family |
| PPR | PF01535 | 165 - 194 | 2.9e-08 | PPR repeat |
| PPR_1 | PF12854 | 194 - 226 | 1.6e-06 | PPR repeat |
| PPR_2 | PF13041 | 197 - 246 | 2.2e-14 | PPR repeat family |
| PPR_1 | PF12854 | 230 - 258 | 1.2e-08 | PPR repeat |
| PPR_2 | PF13041 | 233 - 281 | 2.6e-15 | PPR repeat family |
| PPR_3 | PF13812 | 256 - 314 | 1.2e-10 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 263 - 296 | 2.6e-10 | PPR repeat |
| PPR | PF01535 | 271 - 300 | 8.9e-10 | PPR repeat |
| PPR_1 | PF12854 | 298 - 331 | 7e-06 | PPR repeat |
| PPR_2 | PF13041 | 302 - 342 | 1.1e-07 | PPR repeat family |
| PPR | PF01535 | 306 - 335 | 3.2e-06 | PPR repeat |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 3 cut(s) | 81, 501, 606 |
| Acc16I | TGCGCA | 1 cut(s) | 179 |
| AccII | CGCG | 1 cut(s) | 936 |
| AciI | CCGC | 2 cut(s) | 845, 936 |
| AclWI | GGATC | 4 cut(s) | 217, 366, 379, 1040 |
| AcoI | YGGCCR | 1 cut(s) | 580 |
| AfaI | GTAC | 3 cut(s) | 295, 710, 920 |
| AjnI | CCWGG | 1 cut(s) | 806 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 20, 52 |
| AluBI | AGCT | 2 cut(s) | 393, 575 |
| AluI | AGCT | 2 cut(s) | 393, 575 |
| Alw26I | GTCTC | 4 cut(s) | 471, 545, 950, 967 |
| AlwI | GGATC | 4 cut(s) | 217, 366, 379, 1040 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1049 |
| AoxI | GGCC | 2 cut(s) | 580, 622 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 32, 768 |
| AspLEI | GCGC | 1 cut(s) | 180 |
| AsuHPI | GGTGA | 1 cut(s) | 163 |
| AsuII | TTCGAA | 1 cut(s) | 598 |
| BalI | TGGCCA | 1 cut(s) | 582 |
| BamHI | GGATCC | 1 cut(s) | 371 |
| BccI | CCATC | 6 cut(s) | 509, 523, 614, 667, 734, 902 |
| BciT130I | CCWGG | 1 cut(s) | 808 |
| BcoDI | GTCTC | 4 cut(s) | 471, 545, 950, 967 |
| BfmI | CTRYAG | 1 cut(s) | 1008 |
| BlpI | GCTNAGC | 1 cut(s) | 362 |
| Bme1390I | CCNGG | 1 cut(s) | 808 |
| BmiI | GGNNCC | 2 cut(s) | 373, 483 |
| BmrFI | CCNGG | 1 cut(s) | 808 |
| BmsI | GCATC | 4 cut(s) | 10, 430, 535, 1003 |
| BpmI | CTGGAG | 1 cut(s) | 888 |
| Bpu10I | CCTNAGC | 1 cut(s) | 875 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 362 |
| Bpu14I | TTCGAA | 1 cut(s) | 598 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 20, 50 |
| Bse1I | ACTGG | 1 cut(s) | 855 |
| BseBI | CCWGG | 1 cut(s) | 808 |
| BseGI | GGATG | 1 cut(s) | 520 |
| BseNI | ACTGG | 1 cut(s) | 855 |
| Bsh1236I | CGCG | 1 cut(s) | 936 |
| BshFI | GGCC | 2 cut(s) | 582, 624 |
| BsmAI | GTCTC | 4 cut(s) | 471, 545, 950, 967 |
| BsmI | GAATGC | 1 cut(s) | 453 |
| BsnI | GGCC | 2 cut(s) | 582, 624 |
| Bsp119I | TTCGAA | 1 cut(s) | 598 |
| Bsp1407I | TGTACA | 1 cut(s) | 918 |
| Bsp143I | GATC | 3 cut(s) | 222, 371, 1045 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 362 |
| BspACI | CCGC | 2 cut(s) | 845, 936 |
| BspANI | GGCC | 2 cut(s) | 582, 624 |
| BspFNI | CGCG | 1 cut(s) | 936 |
| BspLI | GGNNCC | 2 cut(s) | 373, 483 |
| BspMAI | CTGCAG | 1 cut(s) | 1012 |
| BspPI | GGATC | 4 cut(s) | 217, 366, 379, 1040 |
| BspT104I | TTCGAA | 1 cut(s) | 598 |
| BsrGI | TGTACA | 1 cut(s) | 918 |
| BsrI | ACTGG | 1 cut(s) | 855 |
| BssMI | GATC | 3 cut(s) | 222, 371, 1045 |
| Bst2UI | CCWGG | 1 cut(s) | 808 |
| Bst4CI | ACNGT | 9 cut(s) | 86, 205, 283, 293, 308, 314, 713, 928, 953 |
| Bst6I | CTCTTC | 1 cut(s) | 38 |
| BstAUI | TGTACA | 1 cut(s) | 918 |
| BstBI | TTCGAA | 1 cut(s) | 598 |
| BstC8I | GCNNGC | 1 cut(s) | 573 |
| BstDEI | CTNAG | 3 cut(s) | 362, 665, 875 |
| BstF5I | GGATG | 1 cut(s) | 520 |
| BstFNI | CGCG | 1 cut(s) | 936 |
| BstHHI | GCGC | 1 cut(s) | 180 |
| BstKTI | GATC | 3 cut(s) | 225, 374, 1048 |
| BstMAI | GTCTC | 4 cut(s) | 471, 545, 950, 967 |
| BstMBI | GATC | 3 cut(s) | 222, 371, 1045 |
| BstNI | CCWGG | 1 cut(s) | 808 |
| BstNSI | RCATGY | 1 cut(s) | 919 |
| BstSCI | CCNGG | 1 cut(s) | 806 |
| BstSFI | CTRYAG | 1 cut(s) | 1008 |
| BstUI | CGCG | 1 cut(s) | 936 |
| BstX2I | RGATCY | 2 cut(s) | 371, 1045 |
| BstYI | RGATCY | 2 cut(s) | 371, 1045 |
| BsuRI | GGCC | 2 cut(s) | 582, 624 |
| BtgZI | GCGATG | 1 cut(s) | 983 |
| BtsCI | GGATG | 1 cut(s) | 520 |
| BtsI | GCAGTG | 2 cut(s) | 660, 1083 |
| BtsIMutI | CAGTG | 4 cut(s) | 660, 862, 958, 1083 |
| Cac8I | GCNNGC | 1 cut(s) | 573 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1049 |
| CfoI | GCGC | 1 cut(s) | 180 |
| Csp6I | GTAC | 3 cut(s) | 294, 709, 919 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 222, 257 |
| CviAII | CATG | 5 cut(s) | 95, 376, 759, 916, 1017 |
| CviJI | RGCY | 5 cut(s) | 393, 575, 582, 624, 850 |
| CviKI_1 | RGCY | 5 cut(s) | 393, 575, 582, 624, 850 |
| CviQI | GTAC | 3 cut(s) | 294, 709, 919 |
| DdeI | CTNAG | 3 cut(s) | 362, 665, 875 |
| DpnI | GATC | 3 cut(s) | 224, 373, 1047 |
| DpnII | GATC | 3 cut(s) | 222, 371, 1045 |
| EaeI | YGGCCR | 1 cut(s) | 580 |
| Eam1104I | CTCTTC | 1 cut(s) | 38 |
| EarI | CTCTTC | 1 cut(s) | 38 |
| Eco32I | GATATC | 1 cut(s) | 700 |
| EcoRII | CCWGG | 1 cut(s) | 806 |
| EcoRV | GATATC | 1 cut(s) | 700 |
| EcoT22I | ATGCAT | 3 cut(s) | 25, 760, 1018 |
| FaeI | CATG | 5 cut(s) | 98, 379, 762, 919, 1020 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 677, 709 |
| FatI | CATG | 5 cut(s) | 94, 375, 758, 915, 1016 |
| FauI | CCCGC | 2 cut(s) | 838, 929 |
| FokI | GGATG | 1 cut(s) | 527 |
| FspAI | RTGCGCAY | 1 cut(s) | 179 |
| FspI | TGCGCA | 1 cut(s) | 179 |
| GlaI | GCGC | 1 cut(s) | 179 |
| GsuI | CTGGAG | 1 cut(s) | 888 |
| HaeIII | GGCC | 2 cut(s) | 582, 624 |
| HhaI | GCGC | 1 cut(s) | 180 |
| Hin1II | CATG | 5 cut(s) | 98, 379, 762, 919, 1020 |
| Hin6I | GCGC | 1 cut(s) | 178 |
| HinP1I | GCGC | 1 cut(s) | 178 |
| HindIII | AAGCTT | 1 cut(s) | 573 |
| HinfI | GANTC | 4 cut(s) | 91, 125, 256, 826 |
| HphI | GGTGA | 1 cut(s) | 163 |
| Hpy166II | GTNNAC | 1 cut(s) | 296 |
| Hpy188I | TCNGA | 2 cut(s) | 40, 323 |
| Hpy188III | TCNNGA | 1 cut(s) | 905 |
| Hpy8I | GTNNAC | 1 cut(s) | 296 |
| HpyAV | CCTTC | 2 cut(s) | 193, 719 |
| HpyCH4III | ACNGT | 9 cut(s) | 86, 205, 283, 293, 308, 314, 713, 928, 953 |
| HpyCH4IV | ACGT | 1 cut(s) | 707 |
| HpyF3I | CTNAG | 3 cut(s) | 362, 665, 875 |
| HpySE526I | ACGT | 1 cut(s) | 707 |
| Hsp92II | CATG | 5 cut(s) | 98, 379, 762, 919, 1020 |
| HspAI | GCGC | 1 cut(s) | 178 |
| Kzo9I | GATC | 3 cut(s) | 222, 371, 1045 |
| LmnI | GCTCC | 1 cut(s) | 237 |
| LpnPI | CCDG | 9 cut(s) | 78, 288, 320, 638, 793, 820, 868, 918, 1062 |
| LweI | GCATC | 4 cut(s) | 10, 430, 535, 1003 |
| MaeII | ACGT | 1 cut(s) | 707 |
| MaeIII | GTNAC | 2 cut(s) | 283, 308 |
| MalI | GATC | 3 cut(s) | 224, 373, 1047 |
| MboI | GATC | 3 cut(s) | 222, 371, 1045 |
| MboII | GAAGA | 1 cut(s) | 25 |
| MfeI | CAATTG | 1 cut(s) | 659 |
| MflI | RGATCY | 2 cut(s) | 371, 1045 |
| MlsI | TGGCCA | 1 cut(s) | 582 |
| MluCI | AATT | 8 cut(s) | 12, 57, 107, 492, 641, 659, 775, 1028 |
| MluNI | TGGCCA | 1 cut(s) | 582 |
| MnlI | CCTC | 3 cut(s) | 41, 208, 670 |
| Mox20I | TGGCCA | 1 cut(s) | 582 |
| Mph1103I | ATGCAT | 3 cut(s) | 25, 760, 1018 |
| MroXI | GAANNNNTTC | 2 cut(s) | 32, 768 |
| MscI | TGGCCA | 1 cut(s) | 582 |
| MseI | TTAA | 2 cut(s) | 11, 981 |
| MslI | CAYNNNNRTG | 1 cut(s) | 509 |
| Msp20I | TGGCCA | 1 cut(s) | 582 |
| MspR9I | CCNGG | 1 cut(s) | 808 |
| MunI | CAATTG | 1 cut(s) | 659 |
| Mva1269I | GAATGC | 1 cut(s) | 453 |
| MvaI | CCWGG | 1 cut(s) | 808 |
| MvnI | CGCG | 1 cut(s) | 936 |
| NdeII | GATC | 3 cut(s) | 222, 371, 1045 |
| NlaIII | CATG | 5 cut(s) | 98, 379, 762, 919, 1020 |
| NlaIV | GGNNCC | 2 cut(s) | 373, 483 |
| NsbI | TGCGCA | 1 cut(s) | 179 |
| NsiI | ATGCAT | 3 cut(s) | 25, 760, 1018 |
| NspI | RCATGY | 1 cut(s) | 919 |
| NspV | TTCGAA | 1 cut(s) | 598 |
| PctI | GAATGC | 1 cut(s) | 453 |
| PdmI | GAANNNNTTC | 2 cut(s) | 32, 768 |
| PfeI | GAWTC | 4 cut(s) | 91, 125, 256, 826 |
| PsiI | TTATAA | 3 cut(s) | 81, 501, 606 |
| Psp6I | CCWGG | 1 cut(s) | 806 |
| PspGI | CCWGG | 1 cut(s) | 806 |
| PspN4I | GGNNCC | 2 cut(s) | 373, 483 |
| PstI | CTGCAG | 1 cut(s) | 1012 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1049 |
| PsuI | RGATCY | 2 cut(s) | 371, 1045 |
| RsaI | GTAC | 3 cut(s) | 295, 710, 920 |
| RsaNI | GTAC | 3 cut(s) | 294, 709, 919 |
| RseI | CAYNNNNRTG | 1 cut(s) | 509 |
| SaqAI | TTAA | 2 cut(s) | 11, 981 |
| Sau3AI | GATC | 3 cut(s) | 222, 371, 1045 |
| ScrFI | CCNGG | 1 cut(s) | 808 |
| SetI | ASST | 9 cut(s) | 33, 163, 185, 277, 395, 577, 710, 730, 898 |
| SfaNI | GCATC | 4 cut(s) | 10, 430, 535, 1003 |
| SfcI | CTRYAG | 1 cut(s) | 1008 |
| SfuI | TTCGAA | 1 cut(s) | 598 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 509 |
| Sse9I | AATT | 8 cut(s) | 12, 57, 107, 492, 641, 659, 775, 1028 |
| SsiI | CCGC | 2 cut(s) | 845, 936 |
| SspI | AATATT | 1 cut(s) | 610 |
| StyD4I | CCNGG | 1 cut(s) | 806 |
| TaaI | ACNGT | 9 cut(s) | 86, 205, 283, 293, 308, 314, 713, 928, 953 |
| TaiI | ACGT | 1 cut(s) | 710 |
| TaqI | TCGA | 3 cut(s) | 246, 598, 618 |
| TasI | AATT | 8 cut(s) | 12, 57, 107, 492, 641, 659, 775, 1028 |
| TatI | WGTACW | 1 cut(s) | 918 |
| TfiI | GAWTC | 4 cut(s) | 91, 125, 256, 826 |
| Tru1I | TTAA | 2 cut(s) | 11, 981 |
| Tru9I | TTAA | 2 cut(s) | 11, 981 |
| TscAI | CASTG | 4 cut(s) | 660, 862, 958, 1083 |
| TspDTI | ATGAA | 3 cut(s) | 83, 159, 899 |
| TspRI | CASTG | 4 cut(s) | 660, 862, 958, 1083 |
| XceI | RCATGY | 1 cut(s) | 919 |
| XmnI | GAANNNNTTC | 2 cut(s) | 32, 768 |
| Zsp2I | ATGCAT | 3 cut(s) | 25, 760, 1018 |