Pentatricopeptide repeat-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PPR_3 | PF13812 | 11 - 64 | 2.5e-07 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 15 - 46 | 5.8e-09 | PPR repeat |
| PPR_2 | PF13041 | 18 - 67 | 5.2e-14 | PPR repeat family |
| PPR_3 | PF13812 | 52 - 99 | 1.1e-10 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 52 - 83 | 2.9e-10 | PPR repeat |
| PPR_2 | PF13041 | 54 - 103 | 1.3e-14 | PPR repeat family |
| PPR | PF01535 | 57 - 87 | 1e-06 | PPR repeat |
| PPR_1 | PF12854 | 85 - 116 | 2.5e-09 | PPR repeat |
| PPR_2 | PF13041 | 89 - 137 | 9e-16 | PPR repeat family |
| PPR_long | PF17177 | 107 - 204 | 2e-07 | Pentacotripeptide-repeat region of PRORP |
| PPR_3 | PF13812 | 112 - 173 | 3.4e-12 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 120 - 154 | 2.1e-10 | PPR repeat |
| PPR | PF01535 | 127 - 158 | 8e-06 | PPR repeat |
| MRP-S27 | PF10037 | 136 - 191 | 1.6e-07 | Mitochondrial 28S ribosomal protein S27 |
| PPR_2 | PF13041 | 137 - 174 | 9.3e-12 | PPR repeat family |
| PPR_1 | PF12854 | 157 - 188 | 4.9e-10 | PPR repeat |
| PPR_2 | PF13041 | 160 - 208 | 1.1e-14 | PPR repeat family |
| TPR_24 | PF23276 | 176 - 272 | 2.4e-06 | Fungal tetratrico peptide repeats |
| PPR_1 | PF12854 | 192 - 223 | 5.6e-11 | PPR repeat |
| PPR_2 | PF13041 | 195 - 244 | 7e-15 | PPR repeat family |
| PPR | PF01535 | 198 - 227 | 2.7e-08 | PPR repeat |
| PPR_2 | PF13041 | 250 - 284 | 1.1e-09 | PPR repeat family |
| PPR_2 | PF13041 | 289 - 320 | 8.2e-07 | PPR repeat family |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 60 |
| Acc36I | ACCTGC | 1 cut(s) | 137 |
| AccII | CGCG | 1 cut(s) | 121 |
| AciI | CCGC | 2 cut(s) | 221, 263 |
| AclI | AACGTT | 1 cut(s) | 375 |
| AcoI | YGGCCR | 1 cut(s) | 907 |
| AcsI | RAATTY | 2 cut(s) | 123, 864 |
| AcyI | GRCGYC | 1 cut(s) | 57 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 752 |
| AhlI | ACTAGT | 1 cut(s) | 316 |
| AjnI | CCWGG | 1 cut(s) | 265 |
| AluBI | AGCT | 4 cut(s) | 337, 437, 656, 883 |
| AluI | AGCT | 4 cut(s) | 337, 437, 656, 883 |
| AoxI | GGCC | 3 cut(s) | 421, 907, 949 |
| ApeKI | GCWGC | 2 cut(s) | 116, 411 |
| ApoI | RAATTY | 2 cut(s) | 123, 864 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 338, 810 |
| AspLEI | GCGC | 1 cut(s) | 121 |
| AsuHPI | GGTGA | 3 cut(s) | 55, 472, 481 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 303, 336 |
| BalI | TGGCCA | 1 cut(s) | 909 |
| BanII | GRGCYC | 1 cut(s) | 683 |
| BbsI | GAAGAC | 2 cut(s) | 38, 52 |
| BbvI | GCAGC | 2 cut(s) | 103, 398 |
| BccI | CCATC | 6 cut(s) | 158, 199, 238, 296, 839, 941 |
| BceAI | ACGGC | 2 cut(s) | 100, 234 |
| BciT130I | CCWGG | 1 cut(s) | 267 |
| BciVI | GTATCC | 2 cut(s) | 304, 716 |
| BclI | TGATCA | 1 cut(s) | 351 |
| BcuI | ACTAGT | 1 cut(s) | 316 |
| BfaI | CTAG | 2 cut(s) | 317, 419 |
| BfmI | CTRYAG | 1 cut(s) | 140 |
| BfuAI | ACCTGC | 1 cut(s) | 137 |
| BfuI | GTATCC | 2 cut(s) | 304, 716 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 267 |
| BisI | GCNGC | 3 cut(s) | 117, 222, 412 |
| BlsI | GCNGC | 3 cut(s) | 118, 223, 413 |
| Bme1390I | CCNGG | 1 cut(s) | 267 |
| BmiI | GGNNCC | 1 cut(s) | 682 |
| BmrFI | CCNGG | 1 cut(s) | 267 |
| BmsI | GCATC | 3 cut(s) | 248, 316, 885 |
| BpiI | GAAGAC | 2 cut(s) | 38, 52 |
| BpuEI | CTTGAG | 1 cut(s) | 131 |
| Bsa29I | ATCGAT | 1 cut(s) | 765 |
| BsaHI | GRCGYC | 1 cut(s) | 57 |
| BsaJI | CCNNGG | 1 cut(s) | 684 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 752 |
| Bse1I | ACTGG | 1 cut(s) | 424 |
| Bse3DI | GCAATG | 1 cut(s) | 336 |
| BseBI | CCWGG | 1 cut(s) | 267 |
| BseCI | ATCGAT | 1 cut(s) | 765 |
| BseDI | CCNNGG | 1 cut(s) | 684 |
| BseGI | GGATG | 1 cut(s) | 263 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 752 |
| BseMI | GCAATG | 1 cut(s) | 336 |
| BseMII | CTCAG | 2 cut(s) | 357, 905 |
| BseNI | ACTGG | 1 cut(s) | 424 |
| BseXI | GCAGC | 2 cut(s) | 103, 398 |
| Bsh1236I | CGCG | 1 cut(s) | 121 |
| BshFI | GGCC | 3 cut(s) | 423, 909, 951 |
| BshVI | ATCGAT | 1 cut(s) | 765 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 752 |
| BsnI | GGCC | 3 cut(s) | 423, 909, 951 |
| Bsp1286I | GDGCHC | 1 cut(s) | 683 |
| Bsp143I | GATC | 5 cut(s) | 78, 351, 661, 762, 766 |
| Bsp19I | CCATGG | 1 cut(s) | 684 |
| BspACI | CCGC | 2 cut(s) | 221, 263 |
| BspANI | GGCC | 3 cut(s) | 423, 909, 951 |
| BspCNI | CTCAG | 2 cut(s) | 356, 904 |
| BspDI | ATCGAT | 1 cut(s) | 765 |
| BspFNI | CGCG | 1 cut(s) | 121 |
| BspLI | GGNNCC | 1 cut(s) | 682 |
| BspMI | ACCTGC | 1 cut(s) | 137 |
| BspQI | GCTCTTC | 1 cut(s) | 344 |
| BsrDI | GCAATG | 1 cut(s) | 336 |
| BsrI | ACTGG | 1 cut(s) | 424 |
| BssECI | CCNNGG | 1 cut(s) | 684 |
| BssMI | GATC | 5 cut(s) | 78, 351, 661, 762, 766 |
| BssNI | GRCGYC | 1 cut(s) | 57 |
| BssT1I | CCWWGG | 1 cut(s) | 684 |
| Bst2UI | CCWGG | 1 cut(s) | 267 |
| Bst4CI | ACNGT | 6 cut(s) | 299, 592, 617, 623, 728, 823 |
| Bst6I | CTCTTC | 1 cut(s) | 344 |
| BstACI | GRCGYC | 1 cut(s) | 57 |
| BstC8I | GCNNGC | 1 cut(s) | 263 |
| BstDEI | CTNAG | 2 cut(s) | 343, 891 |
| BstDSI | CCRYGG | 1 cut(s) | 684 |
| BstF5I | GGATG | 1 cut(s) | 263 |
| BstFNI | CGCG | 1 cut(s) | 121 |
| BstHHI | GCGC | 1 cut(s) | 121 |
| BstKTI | GATC | 5 cut(s) | 81, 354, 664, 765, 769 |
| BstMBI | GATC | 5 cut(s) | 78, 351, 661, 762, 766 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 267, 420, 653 |
| BstNI | CCWGG | 1 cut(s) | 267 |
| BstSCI | CCNGG | 1 cut(s) | 265 |
| BstSFI | CTRYAG | 1 cut(s) | 140 |
| BstUI | CGCG | 1 cut(s) | 121 |
| BstV1I | GCAGC | 2 cut(s) | 103, 398 |
| BstV2I | GAAGAC | 2 cut(s) | 38, 52 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 550 |
| Bsu15I | ATCGAT | 1 cut(s) | 765 |
| BsuI | GTATCC | 2 cut(s) | 304, 716 |
| BsuRI | GGCC | 3 cut(s) | 423, 909, 951 |
| BsuTUI | ATCGAT | 1 cut(s) | 765 |
| BtgI | CCRYGG | 1 cut(s) | 684 |
| BtsCI | GGATG | 1 cut(s) | 263 |
| BtsIMutI | CAGTG | 1 cut(s) | 431 |
| BveI | ACCTGC | 1 cut(s) | 137 |
| Cac8I | GCNNGC | 1 cut(s) | 263 |
| CfoI | GCGC | 1 cut(s) | 121 |
| ClaI | ATCGAT | 1 cut(s) | 765 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 823, 858 |
| CviAII | CATG | 3 cut(s) | 202, 610, 685 |
| DdeI | CTNAG | 2 cut(s) | 343, 891 |
| DpnI | GATC | 5 cut(s) | 80, 353, 663, 764, 768 |
| DpnII | GATC | 5 cut(s) | 78, 351, 661, 762, 766 |
| EaeI | YGGCCR | 1 cut(s) | 907 |
| Eam1104I | CTCTTC | 1 cut(s) | 344 |
| EarI | CTCTTC | 1 cut(s) | 344 |
| Eco130I | CCWWGG | 1 cut(s) | 684 |
| Eco24I | GRGCYC | 1 cut(s) | 683 |
| EcoRI | GAATTC | 1 cut(s) | 864 |
| EcoRII | CCWGG | 1 cut(s) | 265 |
| EcoT14I | CCWWGG | 1 cut(s) | 684 |
| EcoT38I | GRGCYC | 1 cut(s) | 683 |
| ErhI | CCWWGG | 1 cut(s) | 684 |
| FaeI | CATG | 3 cut(s) | 205, 613, 688 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 640, 672 |
| FatI | CATG | 3 cut(s) | 201, 609, 684 |
| FauI | CCCGC | 1 cut(s) | 270 |
| FbaI | TGATCA | 1 cut(s) | 351 |
| Fnu4HI | GCNGC | 3 cut(s) | 117, 222, 412 |
| FokI | GGATG | 1 cut(s) | 270 |
| FriOI | GRGCYC | 1 cut(s) | 683 |
| Fsp4HI | GCNGC | 3 cut(s) | 117, 222, 412 |
| FspBI | CTAG | 2 cut(s) | 317, 419 |
| GlaI | GCGC | 1 cut(s) | 120 |
| GluI | GCNGC | 3 cut(s) | 117, 222, 412 |
| HaeIII | GGCC | 3 cut(s) | 423, 909, 951 |
| HhaI | GCGC | 1 cut(s) | 121 |
| Hin1I | GRCGYC | 1 cut(s) | 57 |
| Hin1II | CATG | 3 cut(s) | 205, 613, 688 |
| Hin6I | GCGC | 1 cut(s) | 119 |
| HinP1I | GCGC | 1 cut(s) | 119 |
| HindIII | AAGCTT | 1 cut(s) | 654 |
| HinfI | GANTC | 3 cut(s) | 397, 405, 565 |
| HphI | GGTGA | 3 cut(s) | 55, 472, 481 |
| Hpy188I | TCNGA | 5 cut(s) | 78, 131, 346, 699, 894 |
| Hpy188III | TCNNGA | 2 cut(s) | 815, 869 |
| Hpy99I | CGWCG | 1 cut(s) | 86 |
| HpyAV | CCTTC | 6 cut(s) | 76, 461, 502, 518, 634, 923 |
| HpyCH4III | ACNGT | 6 cut(s) | 299, 592, 617, 623, 728, 823 |
| HpyCH4IV | ACGT | 2 cut(s) | 57, 375 |
| HpyCH4V | TGCA | 7 cut(s) | 201, 306, 329, 414, 628, 750, 898 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 267, 420, 653 |
| HpyF3I | CTNAG | 2 cut(s) | 343, 891 |
| HpySE526I | ACGT | 2 cut(s) | 57, 375 |
| Hsp92I | GRCGYC | 1 cut(s) | 57 |
| Hsp92II | CATG | 3 cut(s) | 205, 613, 688 |
| HspAI | GCGC | 1 cut(s) | 119 |
| Ksp22I | TGATCA | 1 cut(s) | 351 |
| Kzo9I | GATC | 5 cut(s) | 78, 351, 661, 762, 766 |
| LguI | GCTCTTC | 1 cut(s) | 344 |
| LmnI | GCTCC | 2 cut(s) | 373, 686 |
| Lsp1109I | GCAGC | 2 cut(s) | 103, 398 |
| LweI | GCATC | 3 cut(s) | 248, 316, 885 |
| MaeI | CTAG | 2 cut(s) | 317, 419 |
| MaeII | ACGT | 2 cut(s) | 57, 375 |
| MaeIII | GTNAC | 8 cut(s) | 169, 379, 487, 592, 617, 704, 823, 956 |
| MalI | GATC | 5 cut(s) | 80, 353, 663, 764, 768 |
| MboI | GATC | 5 cut(s) | 78, 351, 661, 762, 766 |
| MboII | GAAGA | 6 cut(s) | 25, 38, 52, 253, 260, 331 |
| MhlI | GDGCHC | 1 cut(s) | 683 |
| MlsI | TGGCCA | 1 cut(s) | 909 |
| MluCI | AATT | 8 cut(s) | 29, 38, 123, 186, 225, 230, 273, 864 |
| MluNI | TGGCCA | 1 cut(s) | 909 |
| MlyI | GAGTC | 1 cut(s) | 414 |
| MnlI | CCTC | 7 cut(s) | 106, 248, 400, 435, 637, 807, 853 |
| Mox20I | TGGCCA | 1 cut(s) | 909 |
| MroXI | GAANNNNTTC | 2 cut(s) | 338, 810 |
| MscI | TGGCCA | 1 cut(s) | 909 |
| MseI | TTAA | 1 cut(s) | 189 |
| Msp20I | TGGCCA | 1 cut(s) | 909 |
| MspR9I | CCNGG | 1 cut(s) | 267 |
| MvaI | CCWGG | 1 cut(s) | 267 |
| MvnI | CGCG | 1 cut(s) | 121 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 267, 420, 653 |
| NcoI | CCATGG | 1 cut(s) | 684 |
| NdeII | GATC | 5 cut(s) | 78, 351, 661, 762, 766 |
| NlaIII | CATG | 3 cut(s) | 205, 613, 688 |
| NlaIV | GGNNCC | 1 cut(s) | 682 |
| NmuCI | GTSAC | 1 cut(s) | 487 |
| PciSI | GCTCTTC | 1 cut(s) | 344 |
| PdmI | GAANNNNTTC | 2 cut(s) | 338, 810 |
| PfeI | GAWTC | 2 cut(s) | 397, 565 |
| PkrI | GCNGC | 3 cut(s) | 118, 223, 413 |
| PleI | GAGTC | 1 cut(s) | 413 |
| PpsI | GAGTC | 1 cut(s) | 413 |
| Psp1406I | AACGTT | 1 cut(s) | 375 |
| Psp6I | CCWGG | 1 cut(s) | 265 |
| PspGI | CCWGG | 1 cut(s) | 265 |
| PspN4I | GGNNCC | 1 cut(s) | 682 |
| SapI | GCTCTTC | 1 cut(s) | 344 |
| SaqAI | TTAA | 1 cut(s) | 189 |
| SatI | GCNGC | 3 cut(s) | 117, 222, 412 |
| Sau3AI | GATC | 5 cut(s) | 78, 351, 661, 762, 766 |
| SchI | GAGTC | 1 cut(s) | 414 |
| ScrFI | CCNGG | 1 cut(s) | 267 |
| SduI | GDGCHC | 1 cut(s) | 683 |
| SfaNI | GCATC | 3 cut(s) | 248, 316, 885 |
| SfcI | CTRYAG | 1 cut(s) | 140 |
| SmlI | CTYRAG | 1 cut(s) | 110 |
| SmoI | CTYRAG | 1 cut(s) | 110 |
| SpeI | ACTAGT | 1 cut(s) | 316 |
| Sse9I | AATT | 8 cut(s) | 29, 38, 123, 186, 225, 230, 273, 864 |
| SsiI | CCGC | 2 cut(s) | 221, 263 |
| SspMI | CTAG | 2 cut(s) | 317, 419 |
| StyD4I | CCNGG | 1 cut(s) | 265 |
| StyI | CCWWGG | 1 cut(s) | 684 |
| TaaI | ACNGT | 6 cut(s) | 299, 592, 617, 623, 728, 823 |
| TaiI | ACGT | 2 cut(s) | 60, 378 |
| TaqI | TCGA | 2 cut(s) | 81, 765 |
| TasI | AATT | 8 cut(s) | 29, 38, 123, 186, 225, 230, 273, 864 |
| TauI | GCSGC | 1 cut(s) | 224 |
| TfiI | GAWTC | 2 cut(s) | 397, 565 |
| Tru1I | TTAA | 1 cut(s) | 189 |
| Tru9I | TTAA | 1 cut(s) | 189 |
| TscAI | CASTG | 1 cut(s) | 431 |
| TseFI | GTSAC | 1 cut(s) | 487 |
| TseI | GCWGC | 2 cut(s) | 116, 411 |
| Tsp45I | GTSAC | 1 cut(s) | 487 |
| TspDTI | ATGAA | 2 cut(s) | 347, 653 |
| TspGWI | ACGGA | 2 cut(s) | 417, 735 |
| TspRI | CASTG | 1 cut(s) | 431 |
| XapI | RAATTY | 2 cut(s) | 123, 864 |
| XmnI | GAANNNNTTC | 2 cut(s) | 338, 810 |
| XspI | CTAG | 2 cut(s) | 317, 419 |
| ZraI | GACGTC | 1 cut(s) | 58 |