Pentatricopeptide repeat-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Thioredoxin | PF00085 | 96 - 196 | 1.2e-31 | Thioredoxin |
| Thioredoxin_7 | PF13899 | 109 - 173 | 2.2e-06 | Thioredoxin-like |
| Thioredoxin_2 | PF13098 | 109 - 190 | 2.7e-06 | Thioredoxin-like domain |
| Thioredoxin_6 | PF13848 | 237 - 408 | 2.6e-24 | Thioredoxin-like domain |
| Thioredoxin | PF00085 | 434 - 518 | 3.4e-20 | Thioredoxin |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 83 |
| AatII | GACGTC | 1 cut(s) | 288 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 385, 757, 1402 |
| AccI | GTMKAC | 3 cut(s) | 10, 87, 273 |
| AccII | CGCG | 4 cut(s) | 164, 359, 401, 410 |
| AccIII | TCCGGA | 2 cut(s) | 181, 391 |
| AclWI | GGATC | 7 cut(s) | 111, 173, 587, 755, 768, 1270, 1550 |
| AcoI | YGGCCR | 3 cut(s) | 145, 151, 402 |
| AcsI | RAATTY | 3 cut(s) | 188, 659, 863 |
| AcuI | CTGAAG | 2 cut(s) | 295, 502 |
| AcyI | GRCGYC | 3 cut(s) | 159, 213, 285 |
| AfaI | GTAC | 4 cut(s) | 257, 398, 819, 1582 |
| AfeI | AGCGCT | 1 cut(s) | 813 |
| AgsI | TTSAA | 6 cut(s) | 298, 723, 956, 996, 1048, 1633 |
| AjnI | CCWGG | 7 cut(s) | 378, 384, 575, 598, 1379, 1493, 1689 |
| AleI | CACNNNNGTG | 1 cut(s) | 1381 |
| Alw21I | GWGCWC | 1 cut(s) | 420 |
| Alw26I | GTCTC | 3 cut(s) | 311, 480, 1277 |
| AlwI | GGATC | 7 cut(s) | 111, 173, 587, 755, 768, 1270, 1550 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 385, 599 |
| Ama87I | CYCGRG | 2 cut(s) | 266, 1364 |
| Aor13HI | TCCGGA | 2 cut(s) | 181, 391 |
| Aor51HI | AGCGCT | 1 cut(s) | 813 |
| AoxI | GGCC | 6 cut(s) | 139, 145, 151, 381, 402, 798 |
| ApeKI | GCWGC | 6 cut(s) | 80, 133, 713, 716, 1034, 1698 |
| ApoI | RAATTY | 3 cut(s) | 188, 659, 863 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 335 |
| AspLEI | GCGC | 5 cut(s) | 38, 166, 361, 639, 814 |
| AspS9I | GGNCC | 5 cut(s) | 139, 382, 555, 596, 692 |
| AsuC2I | CCSGG | 1 cut(s) | 1280 |
| AsuHPI | GGTGA | 1 cut(s) | 1142 |
| AvaI | CYCGRG | 2 cut(s) | 266, 1364 |
| AvaII | GGWCC | 3 cut(s) | 555, 596, 692 |
| BamHI | GGATCC | 1 cut(s) | 760 |
| BanII | GRGCYC | 2 cut(s) | 267, 420 |
| BbsI | GAAGAC | 1 cut(s) | 596 |
| Bbv12I | GWGCWC | 1 cut(s) | 420 |
| BbvI | GCAGC | 6 cut(s) | 67, 145, 700, 703, 1046, 1710 |
| BccI | CCATC | 3 cut(s) | 1286, 1462, 1502 |
| BceAI | ACGGC | 4 cut(s) | 68, 160, 166, 346 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 857, 891, 1355, 1389 |
| BciT130I | CCWGG | 7 cut(s) | 380, 386, 577, 600, 1381, 1495, 1691 |
| BcnI | CCSGG | 1 cut(s) | 1280 |
| BcoDI | GTCTC | 3 cut(s) | 311, 480, 1277 |
| BfaI | CTAG | 2 cut(s) | 930, 1173 |
| BfoI | RGCGCY | 2 cut(s) | 39, 815 |
| BlpI | GCTNAGC | 1 cut(s) | 845 |
| Bme1390I | CCNGG | 8 cut(s) | 380, 386, 577, 600, 1280, 1381, 1495, 1691 |
| Bme18I | GGWCC | 3 cut(s) | 555, 596, 692 |
| BmeT110I | CYCGRG | 2 cut(s) | 266, 1364 |
| BmgT120I | GGNCC | 5 cut(s) | 139, 382, 555, 596, 692 |
| BmiI | GGNNCC | 7 cut(s) | 264, 390, 693, 762, 1407, 1477, 1514 |
| BmrFI | CCNGG | 8 cut(s) | 380, 386, 577, 600, 1280, 1381, 1495, 1691 |
| BmsI | GCATC | 7 cut(s) | 442, 619, 1123, 1498, 1561, 1628, 1666 |
| BpiI | GAAGAC | 1 cut(s) | 596 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 845 |
| BpuEI | CTTGAG | 4 cut(s) | 404, 749, 1259, 1592 |
| BpuMI | CCSGG | 1 cut(s) | 1280 |
| Bsa29I | ATCGAT | 1 cut(s) | 450 |
| BsaHI | GRCGYC | 3 cut(s) | 159, 213, 285 |
| BsaWI | WCCGGW | 3 cut(s) | 181, 391, 1157 |
| BsaXI | ACNNNNNCTCC | 7 cut(s) | 33, 209, 239, 420, 450, 455, 485 |
| Bse118I | RCCGGY | 1 cut(s) | 857 |
| Bse1I | ACTGG | 2 cut(s) | 1103, 1132 |
| Bse3DI | GCAATG | 1 cut(s) | 1390 |
| BseAI | TCCGGA | 2 cut(s) | 181, 391 |
| BseBI | CCWGG | 7 cut(s) | 380, 386, 577, 600, 1381, 1495, 1691 |
| BseCI | ATCGAT | 1 cut(s) | 450 |
| BseGI | GGATG | 7 cut(s) | 634, 739, 841, 1348, 1360, 1489, 1723 |
| BseMI | GCAATG | 1 cut(s) | 1390 |
| BseMII | CTCAG | 6 cut(s) | 46, 121, 491, 687, 786, 836 |
| BseNI | ACTGG | 2 cut(s) | 1103, 1132 |
| BseRI | GAGGAG | 4 cut(s) | 35, 38, 43, 476 |
| BseX3I | CGGCCG | 1 cut(s) | 402 |
| BseXI | GCAGC | 6 cut(s) | 67, 145, 700, 703, 1046, 1710 |
| BseYI | CCCAGC | 3 cut(s) | 61, 808, 1534 |
| BsgI | GTGCAG | 1 cut(s) | 512 |
| Bsh1236I | CGCG | 4 cut(s) | 164, 359, 401, 410 |
| Bsh1285I | CGRYCG | 2 cut(s) | 129, 405 |
| BshFI | GGCC | 6 cut(s) | 141, 147, 153, 383, 404, 800 |
| BshVI | ATCGAT | 1 cut(s) | 450 |
| BsiEI | CGRYCG | 2 cut(s) | 129, 405 |
| BsiHKAI | GWGCWC | 1 cut(s) | 420 |
| BsiHKCI | CYCGRG | 2 cut(s) | 266, 1364 |
| BsiSI | CCGG | 5 cut(s) | 182, 392, 858, 1158, 1280 |
| BsmAI | GTCTC | 3 cut(s) | 311, 480, 1277 |
| BsmBI | CGTCTC | 1 cut(s) | 311 |
| BsmI | GAATGC | 2 cut(s) | 943, 1592 |
| BsnI | GGCC | 6 cut(s) | 141, 147, 153, 383, 404, 800 |
| BsoBI | CYCGRG | 2 cut(s) | 266, 1364 |
| Bsp1286I | GDGCHC | 2 cut(s) | 267, 420 |
| Bsp13I | TCCGGA | 2 cut(s) | 181, 391 |
| Bsp143I | GATC | 7 cut(s) | 103, 178, 244, 579, 760, 1275, 1555 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 845 |
| BspANI | GGCC | 6 cut(s) | 141, 147, 153, 383, 404, 800 |
| BspCNI | CTCAG | 6 cut(s) | 45, 120, 490, 688, 787, 837 |
| BspDI | ATCGAT | 1 cut(s) | 450 |
| BspEI | TCCGGA | 2 cut(s) | 181, 391 |
| BspFNI | CGCG | 4 cut(s) | 164, 359, 401, 410 |
| BspLI | GGNNCC | 7 cut(s) | 264, 390, 693, 762, 1407, 1477, 1514 |
| BspPI | GGATC | 7 cut(s) | 111, 173, 587, 755, 768, 1270, 1550 |
| BspQI | GCTCTTC | 1 cut(s) | 114 |
| BsrDI | GCAATG | 1 cut(s) | 1390 |
| BsrFI | RCCGGY | 1 cut(s) | 857 |
| BsrI | ACTGG | 2 cut(s) | 1103, 1132 |
| BssAI | RCCGGY | 1 cut(s) | 857 |
| BssMI | GATC | 7 cut(s) | 103, 178, 244, 579, 760, 1275, 1555 |
| BssNI | GRCGYC | 3 cut(s) | 159, 213, 285 |
| BssT1I | CCWWGG | 2 cut(s) | 72, 1203 |
| Bst2UI | CCWGG | 7 cut(s) | 380, 386, 577, 600, 1381, 1495, 1691 |
| Bst4CI | ACNGT | 7 cut(s) | 527, 622, 757, 1144, 1567, 1580, 1585 |
| Bst6I | CTCTTC | 1 cut(s) | 114 |
| BstACI | GRCGYC | 3 cut(s) | 159, 213, 285 |
| BstC8I | GCNNGC | 3 cut(s) | 711, 1388, 1425 |
| BstDEI | CTNAG | 6 cut(s) | 32, 107, 477, 696, 795, 845 |
| BstDSI | CCRYGG | 3 cut(s) | 142, 148, 362 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 543 |
| BstF5I | GGATG | 7 cut(s) | 634, 739, 841, 1348, 1360, 1489, 1723 |
| BstFNI | CGCG | 4 cut(s) | 164, 359, 401, 410 |
| BstH2I | RGCGCY | 2 cut(s) | 39, 815 |
| BstHHI | GCGC | 5 cut(s) | 38, 166, 361, 639, 814 |
| BstKTI | GATC | 7 cut(s) | 106, 181, 247, 582, 763, 1278, 1558 |
| BstMAI | GTCTC | 3 cut(s) | 311, 480, 1277 |
| BstMBI | GATC | 7 cut(s) | 103, 178, 244, 579, 760, 1275, 1555 |
| BstMCI | CGRYCG | 2 cut(s) | 129, 405 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 35, 130, 375, 407, 1205, 1392, 1642, 1695 |
| BstNI | CCWGG | 7 cut(s) | 380, 386, 577, 600, 1381, 1495, 1691 |
| BstNSI | RCATGY | 1 cut(s) | 1619 |
| BstSCI | CCNGG | 8 cut(s) | 378, 384, 575, 598, 1278, 1379, 1493, 1689 |
| BstUI | CGCG | 4 cut(s) | 164, 359, 401, 410 |
| BstV1I | GCAGC | 6 cut(s) | 67, 145, 700, 703, 1046, 1710 |
| BstV2I | GAAGAC | 1 cut(s) | 596 |
| BstX2I | RGATCY | 3 cut(s) | 103, 178, 760 |
| BstYI | RGATCY | 3 cut(s) | 103, 178, 760 |
| BstZI | CGGCCG | 1 cut(s) | 402 |
| Bsu15I | ATCGAT | 1 cut(s) | 450 |
| BsuRI | GGCC | 6 cut(s) | 141, 147, 153, 383, 404, 800 |
| BsuTUI | ATCGAT | 1 cut(s) | 450 |
| BtgI | CCRYGG | 3 cut(s) | 142, 148, 362 |
| BtsCI | GGATG | 7 cut(s) | 634, 739, 841, 1348, 1360, 1489, 1723 |
| BtsI | GCAGTG | 1 cut(s) | 373 |
| BtsIMutI | CAGTG | 4 cut(s) | 373, 762, 1125, 1590 |
| Cac8I | GCNNGC | 3 cut(s) | 711, 1388, 1425 |
| CaiI | CAGNNNCTG | 2 cut(s) | 385, 599 |
| CciNI | GCGGCCGC | 1 cut(s) | 402 |
| CfoI | GCGC | 5 cut(s) | 38, 166, 361, 639, 814 |
| Cfr10I | RCCGGY | 1 cut(s) | 857 |
| Cfr13I | GGNCC | 5 cut(s) | 139, 382, 555, 596, 692 |
| ClaI | ATCGAT | 1 cut(s) | 450 |
| CseI | GACGC | 3 cut(s) | 86, 167, 221 |
| CsiI | ACCWGGT | 1 cut(s) | 598 |
| Csp6I | GTAC | 4 cut(s) | 256, 397, 818, 1581 |
| CviAII | CATG | 1 cut(s) | 1616 |
| CviQI | GTAC | 4 cut(s) | 256, 397, 818, 1581 |
| DdeI | CTNAG | 6 cut(s) | 32, 107, 477, 696, 795, 845 |
| DpnI | GATC | 7 cut(s) | 105, 180, 246, 581, 762, 1277, 1557 |
| DpnII | GATC | 7 cut(s) | 103, 178, 244, 579, 760, 1275, 1555 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 83 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 83 |
| EaeI | YGGCCR | 3 cut(s) | 145, 151, 402 |
| EagI | CGGCCG | 1 cut(s) | 402 |
| Eam1104I | CTCTTC | 1 cut(s) | 114 |
| EarI | CTCTTC | 1 cut(s) | 114 |
| EciI | GGCGGA | 1 cut(s) | 441 |
| Ecl136II | GAGCTC | 1 cut(s) | 418 |
| EclXI | CGGCCG | 1 cut(s) | 402 |
| Eco130I | CCWWGG | 2 cut(s) | 72, 1203 |
| Eco24I | GRGCYC | 2 cut(s) | 267, 420 |
| Eco47I | GGWCC | 3 cut(s) | 555, 596, 692 |
| Eco47III | AGCGCT | 1 cut(s) | 813 |
| Eco52I | CGGCCG | 1 cut(s) | 402 |
| Eco53kI | GAGCTC | 1 cut(s) | 418 |
| Eco57I | CTGAAG | 2 cut(s) | 295, 502 |
| Eco88I | CYCGRG | 2 cut(s) | 266, 1364 |
| EcoICRI | GAGCTC | 1 cut(s) | 418 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 543 |
| EcoO109I | RGGNCCY | 3 cut(s) | 382, 596, 692 |
| EcoRI | GAATTC | 1 cut(s) | 188 |
| EcoRII | CCWGG | 7 cut(s) | 378, 384, 575, 598, 1379, 1493, 1689 |
| EcoT14I | CCWWGG | 2 cut(s) | 72, 1203 |
| EcoT22I | ATGCAT | 1 cut(s) | 1621 |
| EcoT38I | GRGCYC | 2 cut(s) | 267, 420 |
| ErhI | CCWWGG | 2 cut(s) | 72, 1203 |
| Esp3I | CGTCTC | 1 cut(s) | 311 |
| FaeI | CATG | 1 cut(s) | 1619 |
| FaiI | YATR | 9 cut(s) | 486, 543, 786, 1153, 1214, 1263, 1374, 1460, 1617 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1041, 1073, 1046, 1078 |
| FatI | CATG | 1 cut(s) | 1615 |
| FauI | CCCGC | 2 cut(s) | 65, 1379 |
| FblI | GTMKAC | 3 cut(s) | 10, 87, 273 |
| FokI | GGATG | 6 cut(s) | 641, 746, 848, 1355, 1367, 1476 |
| FriOI | GRGCYC | 2 cut(s) | 267, 420 |
| FspBI | CTAG | 2 cut(s) | 930, 1173 |
| GlaI | GCGC | 5 cut(s) | 37, 165, 360, 638, 813 |
| GsaI | CCCAGC | 3 cut(s) | 65, 812, 1538 |
| HaeII | RGCGCY | 2 cut(s) | 39, 815 |
| HaeIII | GGCC | 6 cut(s) | 141, 147, 153, 383, 404, 800 |
| HapII | CCGG | 5 cut(s) | 182, 392, 858, 1158, 1280 |
| HgaI | GACGC | 3 cut(s) | 86, 167, 221 |
| HhaI | GCGC | 5 cut(s) | 38, 166, 361, 639, 814 |
| Hin1I | GRCGYC | 3 cut(s) | 159, 213, 285 |
| Hin1II | CATG | 1 cut(s) | 1619 |
| Hin6I | GCGC | 5 cut(s) | 36, 164, 359, 637, 812 |
| HinP1I | GCGC | 5 cut(s) | 36, 164, 359, 637, 812 |
| HincII | GTYRAC | 4 cut(s) | 11, 88, 274, 742 |
| HindII | GTYRAC | 4 cut(s) | 11, 88, 274, 742 |
| HindIII | AAGCTT | 5 cut(s) | 905, 1055, 1247, 1254, 1421 |
| HinfI | GANTC | 9 cut(s) | 7, 12, 672, 791, 1001, 1169, 1346, 1448, 1670 |
| HpaII | CCGG | 5 cut(s) | 182, 392, 858, 1158, 1280 |
| HphI | GGTGA | 1 cut(s) | 1142 |
| Hpy166II | GTNNAC | 5 cut(s) | 11, 88, 274, 532, 742 |
| Hpy188I | TCNGA | 9 cut(s) | 229, 504, 652, 796, 1097, 1111, 1270, 1666, 1675 |
| Hpy8I | GTNNAC | 5 cut(s) | 11, 88, 274, 532, 742 |
| HpyAV | CCTTC | 5 cut(s) | 274, 292, 954, 1003, 1708 |
| HpyCH4III | ACNGT | 7 cut(s) | 527, 622, 757, 1144, 1567, 1580, 1585 |
| HpyCH4IV | ACGT | 2 cut(s) | 285, 612 |
| HpyCH4V | TGCA | 6 cut(s) | 493, 632, 878, 899, 1376, 1619 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 35, 130, 375, 407, 1205, 1392, 1642, 1695 |
| HpyF3I | CTNAG | 6 cut(s) | 32, 107, 477, 696, 795, 845 |
| HpySE526I | ACGT | 2 cut(s) | 285, 612 |
| Hsp92I | GRCGYC | 3 cut(s) | 159, 213, 285 |
| Hsp92II | CATG | 1 cut(s) | 1619 |
| HspAI | GCGC | 5 cut(s) | 36, 164, 359, 637, 812 |
| Kpn2I | TCCGGA | 2 cut(s) | 181, 391 |
| Kzo9I | GATC | 7 cut(s) | 103, 178, 244, 579, 760, 1275, 1555 |
| LguI | GCTCTTC | 1 cut(s) | 114 |
| LmnI | GCTCC | 6 cut(s) | 48, 262, 394, 415, 1141, 1641 |
| Lsp1109I | GCAGC | 6 cut(s) | 67, 145, 700, 703, 1046, 1710 |
| LweI | GCATC | 7 cut(s) | 442, 619, 1123, 1498, 1561, 1628, 1666 |
| MabI | ACCWGGT | 1 cut(s) | 598 |
| MaeI | CTAG | 2 cut(s) | 930, 1173 |
| MaeII | ACGT | 2 cut(s) | 285, 612 |
| MaeIII | GTNAC | 3 cut(s) | 571, 613, 919 |
| MalI | GATC | 7 cut(s) | 105, 180, 246, 581, 762, 1277, 1557 |
| MboI | GATC | 7 cut(s) | 103, 178, 244, 579, 760, 1275, 1555 |
| MfeI | CAATTG | 1 cut(s) | 879 |
| MflI | RGATCY | 3 cut(s) | 103, 178, 760 |
| MhlI | GDGCHC | 2 cut(s) | 267, 420 |
| MluCI | AATT | 5 cut(s) | 188, 659, 863, 879, 1721 |
| MlyI | GAGTC | 6 cut(s) | 6, 16, 785, 995, 1355, 1457 |
| MmeI | TCCRAC | 4 cut(s) | 527, 1075, 1163, 1294 |
| Mph1103I | ATGCAT | 1 cut(s) | 1621 |
| MroI | TCCGGA | 2 cut(s) | 181, 391 |
| MroXI | GAANNNNTTC | 1 cut(s) | 335 |
| MseI | TTAA | 3 cut(s) | 324, 1251, 1652 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1381 |
| MspA1I | CMGCKG | 2 cut(s) | 976, 1538 |
| MspI | CCGG | 5 cut(s) | 182, 392, 858, 1158, 1280 |
| MspR9I | CCNGG | 8 cut(s) | 380, 386, 577, 600, 1280, 1381, 1495, 1691 |
| MunI | CAATTG | 1 cut(s) | 879 |
| Mva1269I | GAATGC | 2 cut(s) | 943, 1592 |
| MvaI | CCWGG | 7 cut(s) | 380, 386, 577, 600, 1381, 1495, 1691 |
| MvnI | CGCG | 4 cut(s) | 164, 359, 401, 410 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 35, 130, 375, 407, 1205, 1392, 1642, 1695 |
| NciI | CCSGG | 1 cut(s) | 1280 |
| NdeII | GATC | 7 cut(s) | 103, 178, 244, 579, 760, 1275, 1555 |
| NlaIII | CATG | 1 cut(s) | 1619 |
| NlaIV | GGNNCC | 7 cut(s) | 264, 390, 693, 762, 1407, 1477, 1514 |
| NmuCI | GTSAC | 2 cut(s) | 613, 919 |
| NotI | GCGGCCGC | 1 cut(s) | 402 |
| NsiI | ATGCAT | 1 cut(s) | 1621 |
| NspI | RCATGY | 1 cut(s) | 1619 |
| OliI | CACNNNNGTG | 1 cut(s) | 1381 |
| PaeR7I | CTCGAG | 1 cut(s) | 1364 |
| PasI | CCCWGGG | 1 cut(s) | 1494 |
| PciSI | GCTCTTC | 1 cut(s) | 114 |
| PcsI | WCGNNNNNNNCGW | 8 cut(s) | 84, 93, 96, 213, 216, 225, 240, 282 |
| PctI | GAATGC | 2 cut(s) | 943, 1592 |
| PdmI | GAANNNNTTC | 1 cut(s) | 335 |
| PfeI | GAWTC | 3 cut(s) | 672, 1169, 1670 |
| PflFI | GACNNNGTC | 1 cut(s) | 287 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 385, 757, 1402 |
| PfoI | TCCNGGA | 1 cut(s) | 1278 |
| PleI | GAGTC | 6 cut(s) | 6, 15, 785, 995, 1354, 1456 |
| PpsI | GAGTC | 6 cut(s) | 6, 15, 785, 995, 1354, 1456 |
| PpuMI | RGGWCCY | 2 cut(s) | 596, 692 |
| Psp124BI | GAGCTC | 1 cut(s) | 420 |
| Psp5II | RGGWCCY | 2 cut(s) | 596, 692 |
| Psp6I | CCWGG | 7 cut(s) | 378, 384, 575, 598, 1379, 1493, 1689 |
| PspFI | CCCAGC | 3 cut(s) | 61, 808, 1534 |
| PspGI | CCWGG | 7 cut(s) | 378, 384, 575, 598, 1379, 1493, 1689 |
| PspN4I | GGNNCC | 7 cut(s) | 264, 390, 693, 762, 1407, 1477, 1514 |
| PspPI | GGNCC | 5 cut(s) | 139, 382, 555, 596, 692 |
| PspPPI | RGGWCCY | 2 cut(s) | 596, 692 |
| PstNI | CAGNNNCTG | 2 cut(s) | 385, 599 |
| PsuI | RGATCY | 3 cut(s) | 103, 178, 760 |
| PsyI | GACNNNGTC | 1 cut(s) | 287 |
| PvuII | CAGCTG | 2 cut(s) | 976, 1538 |
| RsaI | GTAC | 4 cut(s) | 257, 398, 819, 1582 |
| RsaNI | GTAC | 4 cut(s) | 256, 397, 818, 1581 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1381 |
| SacI | GAGCTC | 1 cut(s) | 420 |
| SalI | GTCGAC | 3 cut(s) | 9, 86, 272 |
| SapI | GCTCTTC | 1 cut(s) | 114 |
| SaqAI | TTAA | 3 cut(s) | 324, 1251, 1652 |
| Sau3AI | GATC | 7 cut(s) | 103, 178, 244, 579, 760, 1275, 1555 |
| Sau96I | GGNCC | 5 cut(s) | 139, 382, 555, 596, 692 |
| SchI | GAGTC | 6 cut(s) | 6, 16, 785, 995, 1355, 1457 |
| ScrFI | CCNGG | 8 cut(s) | 380, 386, 577, 600, 1280, 1381, 1495, 1691 |
| SduI | GDGCHC | 2 cut(s) | 267, 420 |
| SexAI | ACCWGGT | 1 cut(s) | 598 |
| SfaNI | GCATC | 7 cut(s) | 442, 619, 1123, 1498, 1561, 1628, 1666 |
| Sfr274I | CTCGAG | 1 cut(s) | 1364 |
| SgrDI | CGTCGACG | 1 cut(s) | 86 |
| SinI | GGWCC | 3 cut(s) | 555, 596, 692 |
| SlaI | CTCGAG | 1 cut(s) | 1364 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1381 |
| SmlI | CTYRAG | 5 cut(s) | 419, 728, 1238, 1364, 1607 |
| SmoI | CTYRAG | 5 cut(s) | 419, 728, 1238, 1364, 1607 |
| Sse9I | AATT | 5 cut(s) | 188, 659, 863, 879, 1721 |
| SspMI | CTAG | 2 cut(s) | 930, 1173 |
| SstI | GAGCTC | 1 cut(s) | 420 |
| StyD4I | CCNGG | 8 cut(s) | 378, 384, 575, 598, 1278, 1379, 1493, 1689 |
| StyI | CCWWGG | 2 cut(s) | 72, 1203 |
| TaaI | ACNGT | 7 cut(s) | 527, 622, 757, 1144, 1567, 1580, 1585 |
| TaiI | ACGT | 2 cut(s) | 288, 615 |
| TaqI | TCGA | 9 cut(s) | 10, 87, 117, 192, 234, 273, 450, 867, 1365 |
| TaqII | GACCGA | 1 cut(s) | 143 |
| TasI | AATT | 5 cut(s) | 188, 659, 863, 879, 1721 |
| TauI | GCSGC | 5 cut(s) | 164, 169, 404, 407, 410 |
| TfiI | GAWTC | 3 cut(s) | 672, 1169, 1670 |
| Tru1I | TTAA | 3 cut(s) | 324, 1251, 1652 |
| Tru9I | TTAA | 3 cut(s) | 324, 1251, 1652 |
| TscAI | CASTG | 4 cut(s) | 380, 762, 1132, 1590 |
| TseFI | GTSAC | 2 cut(s) | 613, 919 |
| TseI | GCWGC | 6 cut(s) | 80, 133, 713, 716, 1034, 1698 |
| Tsp45I | GTSAC | 2 cut(s) | 613, 919 |
| TspDTI | ATGAA | 1 cut(s) | 1101 |
| TspGWI | ACGGA | 4 cut(s) | 428, 473, 1094, 1488 |
| TspRI | CASTG | 4 cut(s) | 380, 762, 1132, 1590 |
| Tth111I | GACNNNGTC | 1 cut(s) | 287 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 385, 757, 1402 |
| VpaK11BI | GGWCC | 3 cut(s) | 555, 596, 692 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 543 |
| XapI | RAATTY | 3 cut(s) | 188, 659, 863 |
| XceI | RCATGY | 1 cut(s) | 1619 |
| XhoI | CTCGAG | 1 cut(s) | 1364 |
| XmiI | GTMKAC | 3 cut(s) | 10, 87, 273 |
| XmnI | GAANNNNTTC | 1 cut(s) | 335 |
| XspI | CTAG | 2 cut(s) | 930, 1173 |
| ZraI | GACGTC | 1 cut(s) | 286 |
| Zsp2I | ATGCAT | 1 cut(s) | 1621 |