Pentatricopeptide repeat-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| ATP-synt_10 | PF05176 | 38 - 266 | 3.3e-33 | ATP10 protein |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 181 |
| AccIII | TCCGGA | 1 cut(s) | 749 |
| AciI | CCGC | 3 cut(s) | 164, 167, 181 |
| AcsI | RAATTY | 1 cut(s) | 681 |
| AcuI | CTGAAG | 1 cut(s) | 649 |
| AfaI | GTAC | 1 cut(s) | 704 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 313 |
| AflII | CTTAAG | 1 cut(s) | 236 |
| AgsI | TTSAA | 4 cut(s) | 13, 512, 608, 688 |
| AjnI | CCWGG | 1 cut(s) | 447 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 119, 151 |
| AluBI | AGCT | 9 cut(s) | 79, 113, 151, 202, 235, 296, 349, 401, 571 |
| AluI | AGCT | 9 cut(s) | 79, 113, 151, 202, 235, 296, 349, 401, 571 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 574 |
| Aor13HI | TCCGGA | 1 cut(s) | 749 |
| AoxI | GGCC | 1 cut(s) | 56 |
| ApeKI | GCWGC | 3 cut(s) | 293, 349, 568 |
| ApoI | RAATTY | 1 cut(s) | 681 |
| AspS9I | GGNCC | 1 cut(s) | 57 |
| AsuII | TTCGAA | 1 cut(s) | 500 |
| BaeGI | GKGCMC | 1 cut(s) | 187 |
| BauI | CACGAG | 1 cut(s) | 538 |
| BbvCI | CCTCAGC | 1 cut(s) | 261 |
| BbvI | GCAGC | 3 cut(s) | 305, 336, 580 |
| BccI | CCATC | 1 cut(s) | 732 |
| BceAI | ACGGC | 1 cut(s) | 203 |
| BciT130I | CCWGG | 1 cut(s) | 449 |
| BciVI | GTATCC | 1 cut(s) | 610 |
| BfrI | CTTAAG | 1 cut(s) | 236 |
| BfuI | GTATCC | 1 cut(s) | 610 |
| BisI | GCNGC | 4 cut(s) | 165, 294, 350, 569 |
| BlsI | GCNGC | 4 cut(s) | 166, 295, 351, 570 |
| Bme1390I | CCNGG | 1 cut(s) | 449 |
| BmgT120I | GGNCC | 1 cut(s) | 57 |
| BmiI | GGNNCC | 1 cut(s) | 748 |
| BmrFI | CCNGG | 1 cut(s) | 449 |
| BmsI | GCATC | 3 cut(s) | 376, 422, 480 |
| Bpu10I | CCTNAGC | 2 cut(s) | 261, 597 |
| Bpu14I | TTCGAA | 1 cut(s) | 500 |
| BpuEI | CTTGAG | 1 cut(s) | 73 |
| BsaJI | CCNNGG | 2 cut(s) | 447, 448 |
| BsaWI | WCCGGW | 1 cut(s) | 749 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 313 |
| BseAI | TCCGGA | 1 cut(s) | 749 |
| BseBI | CCWGG | 1 cut(s) | 449 |
| BseDI | CCNNGG | 2 cut(s) | 447, 448 |
| BseGI | GGATG | 2 cut(s) | 471, 776 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 313 |
| BseMII | CTCAG | 2 cut(s) | 252, 411 |
| BseRI | GAGGAG | 1 cut(s) | 782 |
| BseSI | GKGCMC | 1 cut(s) | 187 |
| BseXI | GCAGC | 3 cut(s) | 305, 336, 580 |
| BseYI | CCCAGC | 1 cut(s) | 99 |
| BshFI | GGCC | 1 cut(s) | 58 |
| BsiSI | CCGG | 1 cut(s) | 750 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 313 |
| BsnI | GGCC | 1 cut(s) | 58 |
| Bsp119I | TTCGAA | 1 cut(s) | 500 |
| Bsp1286I | GDGCHC | 1 cut(s) | 187 |
| Bsp13I | TCCGGA | 1 cut(s) | 749 |
| Bsp143I | GATC | 2 cut(s) | 26, 633 |
| BspACI | CCGC | 3 cut(s) | 164, 167, 181 |
| BspANI | GGCC | 1 cut(s) | 58 |
| BspCNI | CTCAG | 2 cut(s) | 253, 410 |
| BspEI | TCCGGA | 1 cut(s) | 749 |
| BspLI | GGNNCC | 1 cut(s) | 748 |
| BspT104I | TTCGAA | 1 cut(s) | 500 |
| BspTI | CTTAAG | 1 cut(s) | 236 |
| BsrBI | CCGCTC | 1 cut(s) | 181 |
| BssECI | CCNNGG | 2 cut(s) | 447, 448 |
| BssMI | GATC | 2 cut(s) | 26, 633 |
| BssSI | CACGAG | 1 cut(s) | 538 |
| Bst2BI | CACGAG | 1 cut(s) | 538 |
| Bst2UI | CCWGG | 1 cut(s) | 449 |
| Bst4CI | ACNGT | 1 cut(s) | 622 |
| Bst6I | CTCTTC | 2 cut(s) | 759, 804 |
| BstAFI | CTTAAG | 1 cut(s) | 236 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 191, 574 |
| BstBI | TTCGAA | 1 cut(s) | 500 |
| BstC8I | GCNNGC | 2 cut(s) | 183, 192 |
| BstDEI | CTNAG | 4 cut(s) | 109, 261, 397, 597 |
| BstF5I | GGATG | 2 cut(s) | 471, 776 |
| BstKTI | GATC | 2 cut(s) | 29, 636 |
| BstMBI | GATC | 2 cut(s) | 26, 633 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 187, 191, 293, 574 |
| BstNI | CCWGG | 1 cut(s) | 449 |
| BstNSI | RCATGY | 1 cut(s) | 605 |
| BstSCI | CCNGG | 1 cut(s) | 447 |
| BstSLI | GKGCMC | 1 cut(s) | 187 |
| BstV1I | GCAGC | 3 cut(s) | 305, 336, 580 |
| BsuI | GTATCC | 1 cut(s) | 610 |
| BsuRI | GGCC | 1 cut(s) | 58 |
| BtsCI | GGATG | 2 cut(s) | 471, 776 |
| BtsIMutI | CAGTG | 1 cut(s) | 499 |
| Cac8I | GCNNGC | 2 cut(s) | 183, 192 |
| CaiI | CAGNNNCTG | 1 cut(s) | 574 |
| Cfr13I | GGNCC | 1 cut(s) | 57 |
| Csp6I | GTAC | 1 cut(s) | 703 |
| CviAII | CATG | 2 cut(s) | 245, 602 |
| CviQI | GTAC | 1 cut(s) | 703 |
| DdeI | CTNAG | 4 cut(s) | 109, 261, 397, 597 |
| DpnI | GATC | 2 cut(s) | 28, 635 |
| DpnII | GATC | 2 cut(s) | 26, 633 |
| Eam1104I | CTCTTC | 2 cut(s) | 759, 804 |
| EarI | CTCTTC | 2 cut(s) | 759, 804 |
| Eco57I | CTGAAG | 1 cut(s) | 649 |
| EcoRII | CCWGG | 1 cut(s) | 447 |
| FaeI | CATG | 2 cut(s) | 248, 605 |
| FaiI | YATR | 8 cut(s) | 35, 246, 290, 533, 587, 603, 640, 707 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 338, 370 |
| FatI | CATG | 2 cut(s) | 244, 601 |
| FauI | CCCGC | 1 cut(s) | 174 |
| Fnu4HI | GCNGC | 4 cut(s) | 165, 294, 350, 569 |
| FokI | GGATG | 2 cut(s) | 458, 763 |
| Fsp4HI | GCNGC | 4 cut(s) | 165, 294, 350, 569 |
| GluI | GCNGC | 4 cut(s) | 165, 294, 350, 569 |
| GsaI | CCCAGC | 1 cut(s) | 103 |
| HaeIII | GGCC | 1 cut(s) | 58 |
| HapII | CCGG | 1 cut(s) | 750 |
| Hin1II | CATG | 2 cut(s) | 248, 605 |
| HindIII | AAGCTT | 2 cut(s) | 77, 149 |
| HinfI | GANTC | 3 cut(s) | 461, 536, 770 |
| HpaII | CCGG | 1 cut(s) | 750 |
| Hpy166II | GTNNAC | 1 cut(s) | 322 |
| Hpy188I | TCNGA | 6 cut(s) | 232, 331, 555, 582, 668, 696 |
| Hpy188III | TCNNGA | 2 cut(s) | 52, 750 |
| Hpy8I | GTNNAC | 1 cut(s) | 322 |
| HpyAV | CCTTC | 2 cut(s) | 701, 791 |
| HpyCH4III | ACNGT | 1 cut(s) | 622 |
| HpyCH4V | TGCA | 3 cut(s) | 4, 194, 792 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 187, 191, 293, 574 |
| HpyF3I | CTNAG | 4 cut(s) | 109, 261, 397, 597 |
| Hsp92II | CATG | 2 cut(s) | 248, 605 |
| Kpn2I | TCCGGA | 1 cut(s) | 749 |
| Kzo9I | GATC | 2 cut(s) | 26, 633 |
| LmnI | GCTCC | 2 cut(s) | 468, 752 |
| LpnPI | CCDG | 9 cut(s) | 113, 239, 297, 321, 434, 461, 684, 725, 763 |
| Lsp1109I | GCAGC | 3 cut(s) | 305, 336, 580 |
| LweI | GCATC | 3 cut(s) | 376, 422, 480 |
| MalI | GATC | 2 cut(s) | 28, 635 |
| MbiI | CCGCTC | 1 cut(s) | 181 |
| MboI | GATC | 2 cut(s) | 26, 633 |
| MboII | GAAGA | 5 cut(s) | 21, 77, 80, 127, 776 |
| MhlI | GDGCHC | 1 cut(s) | 187 |
| MluCI | AATT | 3 cut(s) | 512, 561, 681 |
| MlyI | GAGTC | 2 cut(s) | 530, 779 |
| MmeI | TCCRAC | 1 cut(s) | 533 |
| MnlI | CCTC | 5 cut(s) | 48, 133, 256, 514, 760 |
| MroI | TCCGGA | 1 cut(s) | 749 |
| MseI | TTAA | 5 cut(s) | 237, 344, 564, 624, 678 |
| MspA1I | CMGCKG | 1 cut(s) | 296 |
| MspCI | CTTAAG | 1 cut(s) | 236 |
| MspI | CCGG | 1 cut(s) | 750 |
| MspR9I | CCNGG | 1 cut(s) | 449 |
| MvaI | CCWGG | 1 cut(s) | 449 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 187, 191, 293, 574 |
| NdeII | GATC | 2 cut(s) | 26, 633 |
| NlaIII | CATG | 2 cut(s) | 248, 605 |
| NlaIV | GGNNCC | 1 cut(s) | 748 |
| NspI | RCATGY | 1 cut(s) | 605 |
| NspV | TTCGAA | 1 cut(s) | 500 |
| PasI | CCCWGGG | 1 cut(s) | 448 |
| PfeI | GAWTC | 1 cut(s) | 461 |
| PkrI | GCNGC | 4 cut(s) | 166, 295, 351, 570 |
| PleI | GAGTC | 2 cut(s) | 530, 778 |
| PpsI | GAGTC | 2 cut(s) | 530, 778 |
| Psp6I | CCWGG | 1 cut(s) | 447 |
| PspFI | CCCAGC | 1 cut(s) | 99 |
| PspGI | CCWGG | 1 cut(s) | 447 |
| PspN4I | GGNNCC | 1 cut(s) | 748 |
| PspPI | GGNCC | 1 cut(s) | 57 |
| PstNI | CAGNNNCTG | 1 cut(s) | 574 |
| PvuII | CAGCTG | 1 cut(s) | 296 |
| RsaI | GTAC | 1 cut(s) | 704 |
| RsaNI | GTAC | 1 cut(s) | 703 |
| SaqAI | TTAA | 5 cut(s) | 237, 344, 564, 624, 678 |
| SatI | GCNGC | 4 cut(s) | 165, 294, 350, 569 |
| Sau3AI | GATC | 2 cut(s) | 26, 633 |
| Sau96I | GGNCC | 1 cut(s) | 57 |
| SchI | GAGTC | 2 cut(s) | 530, 779 |
| ScrFI | CCNGG | 1 cut(s) | 449 |
| SduI | GDGCHC | 1 cut(s) | 187 |
| SfaNI | GCATC | 3 cut(s) | 376, 422, 480 |
| SfuI | TTCGAA | 1 cut(s) | 500 |
| SmlI | CTYRAG | 2 cut(s) | 52, 236 |
| SmoI | CTYRAG | 2 cut(s) | 52, 236 |
| Sse9I | AATT | 3 cut(s) | 512, 561, 681 |
| SsiI | CCGC | 3 cut(s) | 164, 167, 181 |
| SspI | AATATT | 1 cut(s) | 342 |
| StyD4I | CCNGG | 1 cut(s) | 447 |
| TaaI | ACNGT | 1 cut(s) | 622 |
| TaqI | TCGA | 4 cut(s) | 138, 436, 500, 717 |
| TasI | AATT | 3 cut(s) | 512, 561, 681 |
| TauI | GCSGC | 1 cut(s) | 167 |
| TfiI | GAWTC | 1 cut(s) | 461 |
| Tru1I | TTAA | 5 cut(s) | 237, 344, 564, 624, 678 |
| Tru9I | TTAA | 5 cut(s) | 237, 344, 564, 624, 678 |
| TscAI | CASTG | 1 cut(s) | 499 |
| TseI | GCWGC | 3 cut(s) | 293, 349, 568 |
| TspDTI | ATGAA | 4 cut(s) | 387, 420, 602, 633 |
| TspGWI | ACGGA | 1 cut(s) | 776 |
| TspRI | CASTG | 1 cut(s) | 499 |
| Vha464I | CTTAAG | 1 cut(s) | 236 |
| XapI | RAATTY | 1 cut(s) | 681 |
| XceI | RCATGY | 1 cut(s) | 605 |