Rh1CG180500

disease resistance

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
Physical Location & Seq
Forward (+)
39845324 .. 39846451
1128 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG180500.1

Sequence Viewer

Length: 648 bp
ATGGAAGATGTATCATATGGTTGCCTAACTGAACTGGTGCAAAGATCTATGGTTCAAGTTGGAAAATATGGTTTTAGTGGGAAGGTGAAAAGTTGCCGTCTCCATGATCTGATGAGGGACTTGTGCTTGCAAAAGGCAAAAGAGGAGAACTTTCTTGCTATTGTTAACTTTTCTGTGGGTCCGACGTTGGTCAATGTTAGAATTGAGAAATGTGATTTGAATGGTCTTGTTCAATTAAGCAATCTGAAGAAACTACGCACAAGGCCGTTACCGTATGGGTCGGCAGATCGAGCAAAATTGAAGGATGACCCGATTGAAATACTGGAGAAGCTGCCCAACTTAAGGGTGCTTTACCTTGATAGTCTTTCTATCGAATCAGAAACAATGGTTTTCTTCCAAGGAGGCTTTCCTCATCTGGAATTTCTTTCCCTTAGATGGTTGGTTGATTTGAAGGAGTGGAGGGTGGAGAAAGAAGCCATGCCTAGTCTTCAGAGATTGCGCATTCAAGGGTGGTACAAATTGCGGGCAGTTCCAGATGGGCTTCAGGAGATTACTACCCTCAAGGAATTAACAATTGACGAGATGCCCAGTAGATTCTGCAGTAGGGTTGGGGAAGGAGGAGAGGATTTCAACAAAATCAAACATTGA

Protein Analysis

215

Amino Acids

24.73

Weight (kDa)

8.22

Isoelectric Point (pI)

45.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WHD_DRP PF23559 1 - 42 1e-08 Disease resistance protein Winged helix domain
LRR_14 PF23598 99 - 192 9.5e-09 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000069)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G10920 AT1G10920 AT1G10920 AT1G10920 AT1G10920 AT1G50180 AT1G53350 AT1G58390 AT1G58390 AT1G58400 AT1G58400 AT1G58400 AT1G58410 AT1G58410 AT1G58410 AT1G58410 AT1G58602 AT1G58602 AT1G58807 AT1G58807 AT1G58848 AT1G58848 AT1G59124 AT1G59124 AT1G59218 AT1G59218 AT1G59218 AT1G59620 AT1G59780 AT1G59780 AT5G35450 AT5G35450 AT5G43470 AT5G43470 AT5G43470 AT5G43470 AT5G48620 AT5G48620 AT5G48620 AT5G48620 AT5G48620 AT5G48620
fragaria_vesca FvH4_4g04072 FvH4_4g22931 FvH4_4g22931 FvH4_4g22940 FvH4_6g49940 FvH4_6g49940 FvH4_7g08100 FvH4_7g08870 FvH4_7g08870 FvH4_7g09280 FvH4_7g09290 FvH4_7g15190 FvH4_7g15200 FvH4_7g15240 FvH4_7g15240 FvH4_7g33440
malus_domestica MD00G1174600.v1.1 MD01G1113700.v1.1 MD03G1071300.v1.1 MD04G1041500.v1.1 MD04G1238000.v1.1 MD07G1029000.v1.1 MD07G1092100.v1.1 MD07G1092300.v1.1 MD07G1092600.v1.1 MD12G1256300.v1.1 MD13G1128200.v1.1 MD13G1128400.v1.1 MD17G1268000.v1.1
prunus_persica Prupe.1G041300_v2.0.a1 Prupe.1G041300_v2.0.a1 Prupe.1G042900_v2.0.a1 Prupe.1G043100_v2.0.a1 Prupe.1G043100_v2.0.a1 Prupe.1G043100_v2.0.a1 Prupe.1G043100_v2.0.a1 Prupe.1G043600_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G046700_v2.0.a1 Prupe.1G047700_v2.0.a1 Prupe.1G047900_v2.0.a1 Prupe.1G048000_v2.0.a1 Prupe.1G048500_v2.0.a1 Prupe.1G048500_v2.0.a1 Prupe.1G049900_v2.0.a1 Prupe.1G051500_v2.0.a1 Prupe.1G051800_v2.0.a1 Prupe.1G051900_v2.0.a1 Prupe.1G052200_v2.0.a1 Prupe.1G194900_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217900_v2.0.a1 Prupe.1G217900_v2.0.a1 Prupe.1G217900_v2.0.a1 Prupe.1G217900_v2.0.a1 Prupe.1G217900_v2.0.a1 Prupe.2G117200_v2.0.a1 Prupe.2G117200_v2.0.a1 Prupe.2G117200_v2.0.a1 Prupe.2G117200_v2.0.a1 Prupe.2G117300_v2.0.a1 Prupe.2G117400_v2.0.a1 Prupe.2G117500_v2.0.a1 Prupe.2G117700_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G119900_v2.0.a1
pyrus_communis pycom03g05750 pycom04g21110 pycom07g07530 pycom07g07590 pycom13g11110 pycom13g11140 pycom13g11160 pycom13g11170 pycom17g26680
rosa_chinensis RchiOBHm_Chr1g0341231 RchiOBHm_Chr1g0344091 RchiOBHm_Chr1g0344161 RchiOBHm_Chr1g0345001 RchiOBHm_Chr1g0345351 RchiOBHm_Chr1g0345371 RchiOBHm_Chr1g0345391 RchiOBHm_Chr1g0345531 RchiOBHm_Chr1g0345551 RchiOBHm_Chr1g0345571 RchiOBHm_Chr1g0345581 RchiOBHm_Chr1g0345661 RchiOBHm_Chr1g0345691 RchiOBHm_Chr1g0345761 RchiOBHm_Chr1g0345791 RchiOBHm_Chr1g0345821 RchiOBHm_Chr1g0345911 RchiOBHm_Chr1g0345941 RchiOBHm_Chr1g0357611 RchiOBHm_Chr1g0357911 RchiOBHm_Chr1g0357921 RchiOBHm_Chr1g0357931 RchiOBHm_Chr1g0357971 RchiOBHm_Chr1g0358121 RchiOBHm_Chr1g0383491 RchiOBHm_Chr1g0383511 RchiOBHm_Chr1g0383521 RchiOBHm_Chr3g0480581 RchiOBHm_Chr4g0394341 RchiOBHm_Chr4g0394361 RchiOBHm_Chr4g0394411 RchiOBHm_Chr4g0394441 RchiOBHm_Chr4g0407681 RchiOBHm_Chr4g0429191 RchiOBHm_Chr4g0429201 RchiOBHm_Chr4g0429211 RchiOBHm_Chr4g0429221 RchiOBHm_Chr6g0265091
rosa_laevigata RLG00000007088 RLG00000008700 RLG00000009190 RLG00000009702 RLG00000014210 RLG00000028829 RLG00000028833 RLG00000028837 RLG00000028838 RLG00000028921 RLG00000028926
rosa_multiflora Rmu_co8366955.1_g000001 Rmu_co8394205.1_g000001 Rmu_sc0000019.1_g000001 Rmu_sc0000054.1_g000031 Rmu_sc0000054.1_g000033 Rmu_sc0000200.1_g000002 Rmu_sc0000200.1_g000007 Rmu_sc0000200.1_g000018 Rmu_sc0000200.1_g000020 Rmu_sc0000200.1_g000021 Rmu_sc0000251.1_g000012 Rmu_sc0000251.1_g000015 Rmu_sc0000251.1_g000028 Rmu_sc0000253.1_g000015 Rmu_sc0000255.1_g000045 Rmu_sc0000255.1_g000046 Rmu_sc0001292.1_g000013 Rmu_sc0001292.1_g000018 Rmu_sc0001292.1_g000028 Rmu_sc0001292.1_g000029 Rmu_sc0001349.1_g000006 Rmu_sc0001349.1_g000014 Rmu_sc0001582.1_g000006 Rmu_sc0001582.1_g000018 Rmu_sc0001582.1_g000020 Rmu_sc0001692.1_g000007 Rmu_sc0001692.1_g000024 Rmu_sc0001692.1_g000026 Rmu_sc0001692.1_g000029 Rmu_sc0001692.1_g000030 Rmu_sc0001835.1_g000006 Rmu_sc0001835.1_g000010 Rmu_sc0002071.1_g000005 Rmu_sc0002276.1_g000002 Rmu_sc0002276.1_g000009 Rmu_sc0002329.1_g000018 Rmu_sc0002329.1_g000023 Rmu_sc0002329.1_g000025 Rmu_sc0002523.1_g000005 Rmu_sc0003573.1_g000005 Rmu_sc0003573.1_g000006 Rmu_sc0004099.1_g000021 Rmu_sc0005812.1_g000009 Rmu_sc0006271.1_g000002 Rmu_sc0006287.1_g000038 Rmu_sc0006439.1_g000008 Rmu_sc0007456.1_g000004 Rmu_sc0007581.1_g000009 Rmu_sc0007849.1_g000014 Rmu_sc0008115.1_g000012 Rmu_sc0010521.1_g000004 Rmu_sc0012471.1_g000017 Rmu_sc0014762.1_g000001 Rmu_sc0015150.1_g000003 Rmu_sc0017221.1_g000001 Rmu_sc0017299.1_g000001 Rmu_sc0017299.1_g000002 Rmu_sc0021457.1_g000001 Rmu_sc0022067.1_g000001 Rmu_sc0033275.1_g000001 Rmu_ssc0000245.1_g000012 Rmu_ssc0000359.1_g000035 Rmu_ssc0000359.1_g000067 Rmu_ssc0000359.1_g000072 Rmu_ssc0000434.1_g000005 Rmu_ssc0000434.1_g000007
rosa_roxburghii Rroxscaffold_4G00298420 Rroxscaffold_4G00298720 Rroxscaffold_4G00308990 Rroxscaffold_4G00309000 Rroxscaffold_4G00309010 Rroxscaffold_4G00309050 Rroxscaffold_4G00309070 Rroxscaffold_4G00309100 Rroxscaffold_4G00310030 Rroxscaffold_4G00310050 Rroxscaffold_4G00311880 Rroxscaffold_5G00339420 Rroxscaffold_5G00339450 Rroxscaffold_5G00344880 Rroxscaffold_5G00352270 Rroxscaffold_5G00362240 Rroxscaffold_5G00370840 Rroxscaffold_7G00202970
rosa_rugosa Rorug01G0159100.1 Rorug01G0159200.1 Rorug01G0171700 Rorug01G0171900 Rorug01G0172000 Rorug01G0191700 Rorug01G0191800 Rorug01G0256900 Rorug01G0257000 Rorug01G0257100 Rorug03G0198000 Rorug03G0366300.1 Rorug03G0366400.1 Rorug03G0366500.1 Rorug04G0081200 Rorug04G0081200 Rorug04G0081200 Rorug04G0233700 Rorug04G0233800 Rorug04G0233800 Rorug06G0013300
rosa_samantha Rh1CG138800 Rh1CG161300 Rh1CG173800 Rh1CG179800 Rh1CG180100 Rh1CG180500 Rh1CG180800 Rh1CG180900 Rh1CG194100 Rh1DG205100 Rh3AG236300 Rh4AG052000 Rh4AG052100 Rh4AG145900 Rh4AG289700 Rh4AG289800 Rh6AG136800 Rh6AG137300 Rh6BG133600 Rh6CG132000 Rh6CG134000 Rh6DG119300
rosa_wichuraiana Rw0G003420 Rw1G015500 Rw1G016110 Rw1G016180 Rw1G016210 Rw1G016230 Rw1G016280 Rw1G016440 Rw1G016450 Rw1G016460 Rw1G016480 Rw1G017490 Rw1G024140 Rw1G024160 Rw3G022530 Rw4G004140 Rw4G004190 Rw4G011850 Rw6G011800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 500
AciI CCGC 1 cut(s) 523
AcsI RAATTY 1 cut(s) 419
AcuI CTGAAG 3 cut(s) 266, 473, 527
AfaI GTAC 1 cut(s) 515
AfiI CCNNNNNNNGG 2 cut(s) 342, 435
AflII CTTAAG 1 cut(s) 340
AgsI TTSAA 8 cut(s) 56, 220, 233, 301, 317, 451, 506, 631
AjuI GAANNNNNNNTTGG 2 cut(s) 390, 422
AluBI AGCT 1 cut(s) 331
AluI AGCT 1 cut(s) 331
Alw26I GTCTC 1 cut(s) 104
AoxI GGCC 1 cut(s) 263
ApeKI GCWGC 1 cut(s) 331
ApoI RAATTY 1 cut(s) 419
AspLEI GCGC 1 cut(s) 501
AspS9I GGNCC 1 cut(s) 179
AsuHPI GGTGA 1 cut(s) 97
AvaII GGWCC 1 cut(s) 179
BbsI GAAGAC 1 cut(s) 479
BbvI GCAGC 1 cut(s) 318
BccI CCATC 2 cut(s) 429, 530
BceAI ACGGC 2 cut(s) 81, 250
BcoDI GTCTC 1 cut(s) 104
BfaI CTAG 1 cut(s) 483
BfmI CTRYAG 1 cut(s) 598
BfrI CTTAAG 1 cut(s) 340
BglII AGATCT 1 cut(s) 44
BisI GCNGC 1 cut(s) 332
BlsI GCNGC 1 cut(s) 333
Bme18I GGWCC 1 cut(s) 179
BmgT120I GGNCC 1 cut(s) 179
BmiI GGNNCC 1 cut(s) 180
BmrI ACTGGG 1 cut(s) 582
BmsI GCATC 1 cut(s) 573
BmuI ACTGGG 1 cut(s) 582
BoxI GACNNNNGTC 1 cut(s) 188
BpiI GAAGAC 1 cut(s) 479
BpmI CTGGAG 1 cut(s) 344
BpuEI CTTGAG 1 cut(s) 545
BsaJI CCNNGG 1 cut(s) 397
Bsc4I CCNNNNNNNGG 2 cut(s) 342, 435
Bse1I ACTGG 3 cut(s) 39, 327, 588
BseDI CCNNGG 1 cut(s) 397
BseGI GGATG 1 cut(s) 310
BseLI CCNNNNNNNGG 2 cut(s) 342, 435
BseNI ACTGG 3 cut(s) 39, 327, 588
BseRI GAGGAG 2 cut(s) 158, 633
BseXI GCAGC 1 cut(s) 318
BshFI GGCC 1 cut(s) 265
BslFI GGGAC 1 cut(s) 131
BslI CCNNNNNNNGG 2 cut(s) 342, 435
BsmAI GTCTC 1 cut(s) 104
BsmBI CGTCTC 1 cut(s) 104
BsmFI GGGAC 1 cut(s) 131
BsmI GAATGC 1 cut(s) 501
BsnI GGCC 1 cut(s) 265
Bsp143I GATC 3 cut(s) 44, 106, 286
BspACI CCGC 1 cut(s) 523
BspANI GGCC 1 cut(s) 265
BspLI GGNNCC 1 cut(s) 180
BspMAI CTGCAG 1 cut(s) 602
BspTI CTTAAG 1 cut(s) 340
BsrI ACTGG 3 cut(s) 39, 327, 588
BssECI CCNNGG 1 cut(s) 397
BssMI GATC 3 cut(s) 44, 106, 286
BssT1I CCWWGG 1 cut(s) 397
Bst4CI ACNGT 1 cut(s) 273
BstAFI CTTAAG 1 cut(s) 340
BstC8I GCNNGC 2 cut(s) 128, 525
BstDEI CTNAG 1 cut(s) 431
BstF5I GGATG 1 cut(s) 310
BstHHI GCGC 1 cut(s) 501
BstKTI GATC 3 cut(s) 47, 109, 289
BstMAI GTCTC 1 cut(s) 104
BstMBI GATC 3 cut(s) 44, 106, 286
BstMWI GCNNNNNNNGC 1 cut(s) 290
BstPAI GACNNNNGTC 1 cut(s) 188
BstSFI CTRYAG 1 cut(s) 598
BstV1I GCAGC 1 cut(s) 318
BstV2I GAAGAC 1 cut(s) 479
BstX2I RGATCY 1 cut(s) 44
BstYI RGATCY 1 cut(s) 44
BsuRI GGCC 1 cut(s) 265
BtsCI GGATG 1 cut(s) 310
Cac8I GCNNGC 2 cut(s) 128, 525
CfoI GCGC 1 cut(s) 501
Cfr13I GGNCC 1 cut(s) 179
Csp6I GTAC 1 cut(s) 514
CviAII CATG 2 cut(s) 104, 478
CviJI RGCY 5 cut(s) 265, 331, 405, 476, 541
CviKI_1 RGCY 5 cut(s) 265, 331, 405, 476, 541
CviQI GTAC 1 cut(s) 514
DdeI CTNAG 1 cut(s) 431
DpnI GATC 3 cut(s) 46, 108, 288
DpnII GATC 3 cut(s) 44, 106, 286
Eco130I CCWWGG 1 cut(s) 397
Eco47I GGWCC 1 cut(s) 179
Eco57I CTGAAG 3 cut(s) 266, 473, 527
EcoT14I CCWWGG 1 cut(s) 397
ErhI CCWWGG 1 cut(s) 397
Esp3I CGTCTC 1 cut(s) 104
FaeI CATG 2 cut(s) 107, 481
FaiI YATR 7 cut(s) 16, 18, 50, 69, 105, 276, 479
FaqI GGGAC 1 cut(s) 131
FatI CATG 2 cut(s) 103, 477
FauI CCCGC 1 cut(s) 516
FauNDI CATATG 1 cut(s) 16
Fnu4HI GCNGC 1 cut(s) 332
FokI GGATG 1 cut(s) 317
Fsp4HI GCNGC 1 cut(s) 332
FspBI CTAG 1 cut(s) 483
FspI TGCGCA 1 cut(s) 500
GlaI GCGC 1 cut(s) 500
GluI GCNGC 1 cut(s) 332
GsuI CTGGAG 1 cut(s) 344
HaeIII GGCC 1 cut(s) 265
HhaI GCGC 1 cut(s) 501
Hin1II CATG 2 cut(s) 107, 481
Hin6I GCGC 1 cut(s) 499
HinP1I GCGC 1 cut(s) 499
HincII GTYRAC 1 cut(s) 166
HindII GTYRAC 1 cut(s) 166
HinfI GANTC 2 cut(s) 374, 594
HpaI GTTAAC 1 cut(s) 166
HphI GGTGA 1 cut(s) 97
Hpy166II GTNNAC 1 cut(s) 166
Hpy188I TCNGA 5 cut(s) 111, 183, 246, 379, 492
Hpy188III TCNNGA 3 cut(s) 416, 533, 545
Hpy8I GTNNAC 1 cut(s) 166
Hpy99I CGWCG 1 cut(s) 187
HpyAV CCTTC 4 cut(s) 76, 295, 445, 608
HpyCH4III ACNGT 1 cut(s) 273
HpyCH4IV ACGT 1 cut(s) 185
HpyCH4V TGCA 3 cut(s) 40, 130, 600
HpyF10VI GCNNNNNNNGC 1 cut(s) 290
HpyF3I CTNAG 1 cut(s) 431
HpySE526I ACGT 1 cut(s) 185
Hsp92II CATG 2 cut(s) 107, 481
HspAI GCGC 1 cut(s) 499
KspAI GTTAAC 1 cut(s) 166
Kzo9I GATC 3 cut(s) 44, 106, 286
LpnPI CCDG 6 cut(s) 20, 308, 401, 530, 546, 601
Lsp1109I GCAGC 1 cut(s) 318
LweI GCATC 1 cut(s) 573
MaeI CTAG 1 cut(s) 483
MaeII ACGT 1 cut(s) 185
MaeIII GTNAC 1 cut(s) 267
MalI GATC 3 cut(s) 46, 108, 288
MboI GATC 3 cut(s) 44, 106, 286
MboII GAAGA 4 cut(s) 17, 259, 385, 479
MfeI CAATTG 1 cut(s) 573
MflI RGATCY 1 cut(s) 44
MluCI AATT 7 cut(s) 201, 233, 296, 419, 518, 566, 573
MmeI TCCRAC 2 cut(s) 40, 206
MnlI CCTC 8 cut(s) 108, 136, 395, 420, 453, 569, 611, 616
MseI TTAA 4 cut(s) 165, 236, 341, 569
MspCI CTTAAG 1 cut(s) 340
MunI CAATTG 1 cut(s) 573
Mva1269I GAATGC 1 cut(s) 501
MwoI GCNNNNNNNGC 1 cut(s) 290
NdeI CATATG 1 cut(s) 16
NdeII GATC 3 cut(s) 44, 106, 286
NlaIII CATG 2 cut(s) 107, 481
NlaIV GGNNCC 1 cut(s) 180
NsbI TGCGCA 1 cut(s) 500
PctI GAATGC 1 cut(s) 501
PfeI GAWTC 2 cut(s) 374, 594
PkrI GCNGC 1 cut(s) 333
PshAI GACNNNNGTC 1 cut(s) 188
PspN4I GGNNCC 1 cut(s) 180
PspPI GGNCC 1 cut(s) 179
PstI CTGCAG 1 cut(s) 602
PsuI RGATCY 1 cut(s) 44
RsaI GTAC 1 cut(s) 515
RsaNI GTAC 1 cut(s) 514
SaqAI TTAA 4 cut(s) 165, 236, 341, 569
SatI GCNGC 1 cut(s) 332
Sau3AI GATC 3 cut(s) 44, 106, 286
Sau96I GGNCC 1 cut(s) 179
SetI ASST 4 cut(s) 87, 188, 333, 357
SfaNI GCATC 1 cut(s) 573
SfcI CTRYAG 1 cut(s) 598
SinI GGWCC 1 cut(s) 179
SmlI CTYRAG 2 cut(s) 340, 560
SmoI CTYRAG 2 cut(s) 340, 560
Sse9I AATT 7 cut(s) 201, 233, 296, 419, 518, 566, 573
SsiI CCGC 1 cut(s) 523
SspMI CTAG 1 cut(s) 483
StyI CCWWGG 1 cut(s) 397
TaaI ACNGT 1 cut(s) 273
TaiI ACGT 1 cut(s) 188
TaqI TCGA 2 cut(s) 289, 372
TasI AATT 7 cut(s) 201, 233, 296, 419, 518, 566, 573
TfiI GAWTC 2 cut(s) 374, 594
Tru1I TTAA 4 cut(s) 165, 236, 341, 569
Tru9I TTAA 4 cut(s) 165, 236, 341, 569
TseI GCWGC 1 cut(s) 331
Vha464I CTTAAG 1 cut(s) 340
VpaK11BI GGWCC 1 cut(s) 179
XapI RAATTY 1 cut(s) 419
XspI CTAG 1 cut(s) 483
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.