Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0000069

Physical Location & Seq

Genomic Coordinates Reverse (-)

34570443 .. 34573702

Gene Structure 3260 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G015500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2886 bp

ATGGCTGAAGGTGTTGTTACAGTTGTGGCTGAAGGGATCAAGCCCCTCGGAGAGTTCATCATTCAGCAAGCGAAATTCTTGAGTGGAGTCAGCTATCAAATTGAGCTTGTGCAGAACGAGCTACACTTGATCCGGGGATTTCTAAAAGACGCAGATATGAAGCAACAAGATGAAGAACTAGTACGCAATTGTGTTGAACTTATCAGAGATGCTGCTTATGACTTGGAGGATGTCATTGAATCTTTTTACTTGAAAGTGGCTTCCAGGAGGAGAGGAGGTACTGTGAAGAGGATTGTTCTCAAAAGGTTTGCCTGCATCTTTAATGAAGGACTTAATCGATACAAGATTGGGTCCGAAATTGAGCATATTATGGCCAAACTTTCTCATCTGAGGTCGAATTTGCAGAGTTATAACATAAGACAAATAAGTGGGGGTGAAAGTGTGGCTTCAGCTTTTAAGAGGCAACAAGATAGGAGGCGAACTTACGCTCATGAAGTTGAAAGTCATATTGTTGGGTTGGAGGAAATTACGGGAACACTGGTGAAAAAGTTGGTGAGAGAAGGAAAGCGTCATCTAGTTGTTTCTATTTGGGGGATGGGCGGCTCTGGAAAAACCACTCTTGCAAAACAGGTTTTTCGTCAAAATGAAATTAAGCGTCATTTTGATTGTTTTGCTTGGGTCTGTATATCTCAACAATGGGAAGGAAAGGTTGTATTGGAAGAGATTTTAATCAAACTCACTTCCCCATCAACAGAGAAAAGGAAAGAAATTTCCAAAATGAAAATGGATGAAATAGCAGAGGAGGTCTGTAGTATCCAACGAGAAAAGAGATGTTTGGTGGTCCTTGATGACATATGGACTCAAGAGGCTTGGAATTCGATAAAAGCTGGATTCCCAATCAATGAGGAAACAGAGAGCCGGATATTACTCACCACTCGCAAGAAAGAAGTCGCCTTGCTTGCATCCAGAAATGATCATCTCCACCAACCTCAGCAACTAGATGACAACCAGTGCTGGGAACTGTTTGAAAAGATAGCCATCTGTGGAAGCGACAAAACAGACTTGGAAATTGATGCAGAGAAGAGAAAATTAGGAGAGGAGATGCTTAAACATTGTTCGGGTCTACCATTAGCCATCAGTGTGCTCGCTGGTCTTCTTAGTAGACGAGAGACGGTTGATGAATGGAGGACAGTACGTGGAAATGTTAATGCATACATAATGAGAGGCACAAATGTCCTTGAAAGAGAAAAGACAAGTCAGGAGTGTGGTGTTTCAGGTGTCTTGGCATTGAGTTATGATGACTTACCATCTCACTTGAAACTCTGCTTTCTGTATTTAGCCCAATATCCTGAGGATCATGAGATACAGGTAACAAGATTGACTCAATTATGGATTGCAGAAGGGTTTATACCTTCAACATCAGAAATACATGGTTCAATTGAATTAATGGAAGATGTATCATATGGTTGCCTAATTGAACTGGTGCAAAGATCTATGATTCAAGTTGTAAAATCTGGTTTAAGTGGGAAGGTGAAAACTTGTCGTCTCCATGATCTTATGCGGGACTTGTGCTTGCAAAAGGCAAAAGAGGAGAACTTTCTCGGTATTGTTAACTTTTCTGTTGGTCCGGTATCTAATGCAACACTGATTGGTAAGGTTCGAAGACTTGCCCTCTATTTGGACAGAACTGTTCAATATGAGTTCAGTAGTGAGAATGGAAGAGATGGCCACATTAGGTCTCTATTATACTTTGCCCCAGGACACTTCTACCAAAAGTGGAACAAAAGAATAATACGATCAGTATTCAATGACTTCAAATTGCTTAGAGTCTTGAAGTTTGAAAATATAGATGGAGGTTTTGAGTTACCAAAGACGATTGGGAATCTAGTCCACTTGAGGTTTCTGAGTCTGAACGGTAGTGCATATCGTGCCTTGCCATCATCTGTATCTAATCTGGTACTTTTGCAAACTCTAGATCTGCGGAGTTCTTTTTTATATGTTGGATCTTGTTTTGGGTTTCATTGTGAGATGACTACTAATATCAGAAATGTGTTTTGGAATTTGGAGCAACTGAGGCATTTGTATTTACCAGAAGAGCACCTCGTCATTGAGAAACTGTCATTTGCAAGGCTGTGCAATTTGCAGACGTTGGTCAATGTTTCAATTGAGAAATGTGATTTGAATGGTCTTGTTCAATTAAGCATTCTGAAGAAACTAAGCATAAGGCCATCAGAGTCTAGTAGGTTGGAAAAGCTGAAGGACATGTTGATATCAAGGAATAGAACATATAAACATCTTCGGTCTCTATCTCTGGAGGTAATCGGATCTGGTGATGGGGATATTATACCAAGTGATATAGTATTAAGGTGTCCTCATGTATACAGGCTGCGACTGGAGGGGAAAATGACAGCGTTACCGAAAGAGCTCCCAAACCTCGCCAAGTTAACGCTGATAAAAACAAAACTGAAGGGTGATCAGATTGAAATACTGGAGAAGCTGCCCAACTTAAGGGTGCTTTACCTCGGTTGGTGTTCTTTCGAATCAGAAACAATGGTTTTCTCCCCAGGCTTTCCTCATCTGGAATTTCTTACCCTTAAAAGAATGGATGATTTGAAGGAGTGGAGGGTGGAGAAAGAAGCCATGCGTAGTCTGCAGAGATTGCGCATTGAAAACTGTTGGCAATTACGGGCAGTTCCAGATGGGCTTCAGGAGATTACTACCCTCAAGGAATTAACAATTGACGGGATGCCCAGGAGATTCTGCAGAAGGGTTGGGAAAGGAGGAGAGGATTTCTACAAAATCAAACATGTGCCTTCTCTTATAATCACAAATATTCAACGCGACTACGAAATGGAGGAAGCAGCAGTGACCCTGATTAGGAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001101 GO:0002230 GO:0002238 GO:0002239 GO:0002252 GO:0002376 GO:0002682 GO:0002697 GO:0002831 GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008219 GO:0009314 GO:0009416 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009615 GO:0009620 GO:0009626 GO:0009628 GO:0009637 GO:0009642 GO:0009646 GO:0009719 GO:0009725 GO:0009751 GO:0009987 GO:0010033 GO:0012501 GO:0014070 GO:0016020 GO:0023052 GO:0030054 GO:0031347 GO:0032101 GO:0032870 GO:0033554 GO:0034050 GO:0035690 GO:0036094 GO:0042221 GO:0042493 GO:0043207 GO:0043900 GO:0044464 GO:0045087 GO:0046677 GO:0048583 GO:0050688 GO:0050691 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051607 GO:0051704 GO:0051707 GO:0051716 GO:0055044 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071407 GO:0071446 GO:0071495 GO:0071944 GO:0080134 GO:0097159 GO:0098542 GO:1901265 GO:1901363 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NB-ARC

Protein Analysis

961

Amino Acids

110.3

Weight (kDa)

8.62

Isoelectric Point (pI)

51.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rx_N	PF18052	13 - 91	9e-19	Rx N-terminal domain
NB-ARC	PF00931	177 - 347	3.1e-42	NB-ARC domain
WHD_DRP	PF23559	449 - 524	3.5e-18	Disease resistance protein Winged helix domain
LRR_14	PF23598	601 - 914	9e-31	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000069)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10920 AT1G10920 AT1G10920 AT1G10920 AT1G10920 AT1G50180 AT1G53350 AT1G58390 AT1G58390 AT1G58400 AT1G58400 AT1G58400 AT1G58410 AT1G58410 AT1G58410 AT1G58410 AT1G58602 AT1G58602 AT1G58807 AT1G58807 AT1G58848 AT1G58848 AT1G59124 AT1G59124 AT1G59218 AT1G59218 AT1G59218 AT1G59620 AT1G59780 AT1G59780 AT5G35450 AT5G35450 AT5G43470 AT5G43470 AT5G43470 AT5G43470 AT5G48620 AT5G48620 AT5G48620 AT5G48620 AT5G48620 AT5G48620
fragaria_vesca	FvH4_4g04072 FvH4_4g22931 FvH4_4g22931 FvH4_4g22940 FvH4_6g49940 FvH4_6g49940 FvH4_7g08100 FvH4_7g08870 FvH4_7g08870 FvH4_7g09280 FvH4_7g09290 FvH4_7g15190 FvH4_7g15200 FvH4_7g15240 FvH4_7g15240 FvH4_7g33440
malus_domestica	MD00G1174600.v1.1 MD01G1113700.v1.1 MD03G1071300.v1.1 MD04G1041500.v1.1 MD04G1238000.v1.1 MD07G1029000.v1.1 MD07G1092100.v1.1 MD07G1092300.v1.1 MD07G1092600.v1.1 MD12G1256300.v1.1 MD13G1128200.v1.1 MD13G1128400.v1.1 MD17G1268000.v1.1
prunus_persica	Prupe.1G041300_v2.0.a1 Prupe.1G041300_v2.0.a1 Prupe.1G042900_v2.0.a1 Prupe.1G043100_v2.0.a1 Prupe.1G043100_v2.0.a1 Prupe.1G043100_v2.0.a1 Prupe.1G043100_v2.0.a1 Prupe.1G043600_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G046700_v2.0.a1 Prupe.1G047700_v2.0.a1 Prupe.1G047900_v2.0.a1 Prupe.1G048000_v2.0.a1 Prupe.1G048500_v2.0.a1 Prupe.1G048500_v2.0.a1 Prupe.1G049900_v2.0.a1 Prupe.1G051500_v2.0.a1 Prupe.1G051800_v2.0.a1 Prupe.1G051900_v2.0.a1 Prupe.1G052200_v2.0.a1 Prupe.1G194900_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217900_v2.0.a1 Prupe.1G217900_v2.0.a1 Prupe.1G217900_v2.0.a1 Prupe.1G217900_v2.0.a1 Prupe.1G217900_v2.0.a1 Prupe.2G117200_v2.0.a1 Prupe.2G117200_v2.0.a1 Prupe.2G117200_v2.0.a1 Prupe.2G117200_v2.0.a1 Prupe.2G117300_v2.0.a1 Prupe.2G117400_v2.0.a1 Prupe.2G117500_v2.0.a1 Prupe.2G117700_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G119900_v2.0.a1
pyrus_communis	pycom03g05750 pycom04g21110 pycom07g07530 pycom07g07590 pycom13g11110 pycom13g11140 pycom13g11160 pycom13g11170 pycom17g26680
rosa_chinensis	RchiOBHm_Chr1g0341231 RchiOBHm_Chr1g0344091 RchiOBHm_Chr1g0344161 RchiOBHm_Chr1g0345001 RchiOBHm_Chr1g0345351 RchiOBHm_Chr1g0345371 RchiOBHm_Chr1g0345391 RchiOBHm_Chr1g0345531 RchiOBHm_Chr1g0345551 RchiOBHm_Chr1g0345571 RchiOBHm_Chr1g0345581 RchiOBHm_Chr1g0345661 RchiOBHm_Chr1g0345691 RchiOBHm_Chr1g0345761 RchiOBHm_Chr1g0345791 RchiOBHm_Chr1g0345821 RchiOBHm_Chr1g0345911 RchiOBHm_Chr1g0345941 RchiOBHm_Chr1g0357611 RchiOBHm_Chr1g0357911 RchiOBHm_Chr1g0357921 RchiOBHm_Chr1g0357931 RchiOBHm_Chr1g0357971 RchiOBHm_Chr1g0358121 RchiOBHm_Chr1g0383491 RchiOBHm_Chr1g0383511 RchiOBHm_Chr1g0383521 RchiOBHm_Chr3g0480581 RchiOBHm_Chr4g0394341 RchiOBHm_Chr4g0394361 RchiOBHm_Chr4g0394411 RchiOBHm_Chr4g0394441 RchiOBHm_Chr4g0407681 RchiOBHm_Chr4g0429191 RchiOBHm_Chr4g0429201 RchiOBHm_Chr4g0429211 RchiOBHm_Chr4g0429221 RchiOBHm_Chr6g0265091
rosa_laevigata	RLG00000007088 RLG00000008700 RLG00000009190 RLG00000009702 RLG00000014210 RLG00000028829 RLG00000028833 RLG00000028837 RLG00000028838 RLG00000028921 RLG00000028926
rosa_multiflora	Rmu_co8366955.1_g000001 Rmu_co8394205.1_g000001 Rmu_sc0000019.1_g000001 Rmu_sc0000054.1_g000031 Rmu_sc0000054.1_g000033 Rmu_sc0000200.1_g000002 Rmu_sc0000200.1_g000007 Rmu_sc0000200.1_g000018 Rmu_sc0000200.1_g000020 Rmu_sc0000200.1_g000021 Rmu_sc0000251.1_g000012 Rmu_sc0000251.1_g000015 Rmu_sc0000251.1_g000028 Rmu_sc0000253.1_g000015 Rmu_sc0000255.1_g000045 Rmu_sc0000255.1_g000046 Rmu_sc0001292.1_g000013 Rmu_sc0001292.1_g000018 Rmu_sc0001292.1_g000028 Rmu_sc0001292.1_g000029 Rmu_sc0001349.1_g000006 Rmu_sc0001349.1_g000014 Rmu_sc0001582.1_g000006 Rmu_sc0001582.1_g000018 Rmu_sc0001582.1_g000020 Rmu_sc0001692.1_g000007 Rmu_sc0001692.1_g000024 Rmu_sc0001692.1_g000026 Rmu_sc0001692.1_g000029 Rmu_sc0001692.1_g000030 Rmu_sc0001835.1_g000006 Rmu_sc0001835.1_g000010 Rmu_sc0002071.1_g000005 Rmu_sc0002276.1_g000002 Rmu_sc0002276.1_g000009 Rmu_sc0002329.1_g000018 Rmu_sc0002329.1_g000023 Rmu_sc0002329.1_g000025 Rmu_sc0002523.1_g000005 Rmu_sc0003573.1_g000005 Rmu_sc0003573.1_g000006 Rmu_sc0004099.1_g000021 Rmu_sc0005812.1_g000009 Rmu_sc0006271.1_g000002 Rmu_sc0006287.1_g000038 Rmu_sc0006439.1_g000008 Rmu_sc0007456.1_g000004 Rmu_sc0007581.1_g000009 Rmu_sc0007849.1_g000014 Rmu_sc0008115.1_g000012 Rmu_sc0010521.1_g000004 Rmu_sc0012471.1_g000017 Rmu_sc0014762.1_g000001 Rmu_sc0015150.1_g000003 Rmu_sc0017221.1_g000001 Rmu_sc0017299.1_g000001 Rmu_sc0017299.1_g000002 Rmu_sc0021457.1_g000001 Rmu_sc0022067.1_g000001 Rmu_sc0033275.1_g000001 Rmu_ssc0000245.1_g000012 Rmu_ssc0000359.1_g000035 Rmu_ssc0000359.1_g000067 Rmu_ssc0000359.1_g000072 Rmu_ssc0000434.1_g000005 Rmu_ssc0000434.1_g000007
rosa_roxburghii	Rroxscaffold_4G00298420 Rroxscaffold_4G00298720 Rroxscaffold_4G00308990 Rroxscaffold_4G00309000 Rroxscaffold_4G00309010 Rroxscaffold_4G00309050 Rroxscaffold_4G00309070 Rroxscaffold_4G00309100 Rroxscaffold_4G00310030 Rroxscaffold_4G00310050 Rroxscaffold_4G00311880 Rroxscaffold_5G00339420 Rroxscaffold_5G00339450 Rroxscaffold_5G00344880 Rroxscaffold_5G00352270 Rroxscaffold_5G00362240 Rroxscaffold_5G00370840 Rroxscaffold_7G00202970
rosa_rugosa	Rorug01G0159100.1 Rorug01G0159200.1 Rorug01G0171700 Rorug01G0171900 Rorug01G0172000 Rorug01G0191700 Rorug01G0191800 Rorug01G0256900 Rorug01G0257000 Rorug01G0257100 Rorug03G0198000 Rorug03G0366300.1 Rorug03G0366400.1 Rorug03G0366500.1 Rorug04G0081200 Rorug04G0081200 Rorug04G0081200 Rorug04G0233700 Rorug04G0233800 Rorug04G0233800 Rorug06G0013300
rosa_samantha	Rh1CG138800 Rh1CG161300 Rh1CG173800 Rh1CG179800 Rh1CG180100 Rh1CG180500 Rh1CG180800 Rh1CG180900 Rh1CG194100 Rh1DG205100 Rh3AG236300 Rh4AG052000 Rh4AG052100 Rh4AG145900 Rh4AG289700 Rh4AG289800 Rh6AG136800 Rh6AG137300 Rh6BG133600 Rh6CG132000 Rh6CG134000 Rh6DG119300
rosa_wichuraiana	Rw0G003420 Rw1G015500 Rw1G016110 Rw1G016180 Rw1G016210 Rw1G016230 Rw1G016280 Rw1G016440 Rw1G016450 Rw1G016460 Rw1G016480 Rw1G017490 Rw1G024140 Rw1G024160 Rw3G022530 Rw4G004140 Rw4G004190 Rw4G011850 Rw6G011800

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	411, 2822
Acc16I	TGCGCA	1 cut(s)	2663
AccI	GTMKAC	3 cut(s)	1123, 1162, 2379
AccII	CGCG	1 cut(s)	2841
AciI	CCGC	3 cut(s)	600, 1561, 1981
AclWI	GGATC	5 cut(s)	44, 124, 1362, 2011, 2332
AcoI	YGGCCR	2 cut(s)	372, 1726
AcsI	RAATTY	6 cut(s)	74, 397, 768, 874, 2059, 2582
AcuI	CTGAAG	7 cut(s)	27, 51, 432, 2228, 2276, 2486, 2690
AfaI	GTAC	4 cut(s)	183, 280, 1194, 1959
AfiI	CCNNNNNNNGG	4 cut(s)	1015, 1678, 2508, 2877
AflII	CTTAAG	1 cut(s)	2506
AflIII	ACRYGT	2 cut(s)	2262, 2806
AhlI	ACTAGT	1 cut(s)	178
AjnI	CCWGG	4 cut(s)	263, 1756, 2563, 2750
AjuI	GAANNNNNNNTTGG	2 cut(s)	2038, 2070
AluBI	AGCT	8 cut(s)	93, 106, 121, 452, 887, 2254, 2425, 2497
AluI	AGCT	8 cut(s)	93, 106, 121, 452, 887, 2254, 2425, 2497
Alw21I	GWGCWC	3 cut(s)	1146, 2100, 2427
Alw26I	GTCTC	4 cut(s)	1163, 1550, 1743, 2307
AlwI	GGATC	5 cut(s)	44, 124, 1362, 2011, 2332
AoxI	GGCC	3 cut(s)	372, 1726, 2225
ApeKI	GCWGC	4 cut(s)	212, 2386, 2497, 2861
ApoI	RAATTY	6 cut(s)	74, 397, 768, 874, 2059, 2582
AseI	ATTAAT	1 cut(s)	1445
AspLEI	GCGC	1 cut(s)	2664
AspS9I	GGNCC	3 cut(s)	351, 841, 1625
AsuC2I	CCSGG	1 cut(s)	134
AsuHPI	GGTGA	7 cut(s)	446, 553, 565, 922, 1543, 2342, 2483
AsuII	TTCGAA	2 cut(s)	1660, 2538
AvaII	GGWCC	3 cut(s)	351, 841, 1625
AxyI	CCTNAGG	1 cut(s)	1350
BalI	TGGCCA	2 cut(s)	374, 1728
BanII	GRGCYC	1 cut(s)	2427
BarI	GAAGNNNNNNTAC	4 cut(s)	165, 197, 1392, 1424
BbsI	GAAGAC	2 cut(s)	1145, 1669
Bbv12I	GWGCWC	3 cut(s)	1146, 2100, 2427
BbvCI	CCTCAGC	1 cut(s)	990
BbvI	GCAGC	4 cut(s)	199, 2373, 2484, 2873
BciT130I	CCWGG	4 cut(s)	265, 1758, 2565, 2752
BciVI	GTATCC	1 cut(s)	824
BclI	TGATCA	2 cut(s)	973, 2473
BcnI	CCSGG	1 cut(s)	134
BcoDI	GTCTC	4 cut(s)	1163, 1550, 1743, 2307
BcuI	ACTAGT	1 cut(s)	178
BfaI	CTAG	6 cut(s)	179, 575, 998, 1886, 1973, 2238
BfmI	CTRYAG	3 cut(s)	808, 2651, 2761
BfrI	CTTAAG	1 cut(s)	2506
BfuI	GTATCC	1 cut(s)	824
BglII	AGATCT	2 cut(s)	1490, 1975
BisI	GCNGC	5 cut(s)	213, 601, 2387, 2498, 2862
BlsI	GCNGC	5 cut(s)	214, 602, 2388, 2499, 2863
Bme1390I	CCNGG	5 cut(s)	134, 265, 1758, 2565, 2752
Bme18I	GGWCC	3 cut(s)	351, 841, 1625
BmgT120I	GGNCC	3 cut(s)	351, 841, 1625
BmiI	GGNNCC	1 cut(s)	352
BmrFI	CCNGG	5 cut(s)	134, 265, 1758, 2565, 2752
BmsI	GCATC	6 cut(s)	199, 324, 971, 1063, 1092, 2736
BoxI	GACNNNNGTC	1 cut(s)	2150
BpiI	GAAGAC	2 cut(s)	1145, 1669
BpmI	CTGGAG	3 cut(s)	2333, 2414, 2510
Bpu10I	CCTNAGC	1 cut(s)	990
Bpu14I	TTCGAA	2 cut(s)	1660, 2538
BpuEI	CTTGAG	4 cut(s)	100, 846, 1915, 2708
BpuMI	CCSGG	1 cut(s)	134
Bsa29I	ATCGAT	1 cut(s)	337
BsaAI	YACGTR	1 cut(s)	1196
BsaBI	GATNNNNATC	2 cut(s)	728, 1037
BsaI	GGTCTC	2 cut(s)	1743, 2307
BsaJI	CCNNGG	6 cut(s)	46, 133, 1756, 2521, 2563, 2750
BsaWI	WCCGGW	1 cut(s)	1627
BsaXI	ACNNNNNCTCC	4 cut(s)	262, 267, 292, 297
Bsc4I	CCNNNNNNNGG	4 cut(s)	1015, 1678, 2508, 2877
Bse1I	ACTGG	5 cut(s)	543, 1009, 1485, 2397, 2493
Bse21I	CCTNAGG	1 cut(s)	1350
Bse8I	GATNNNNATC	2 cut(s)	728, 1037
BseBI	CCWGG	4 cut(s)	265, 1758, 2565, 2752
BseCI	ATCGAT	1 cut(s)	337
BseDI	CCNNGG	6 cut(s)	46, 133, 1756, 2521, 2563, 2750
BseGI	GGATG	6 cut(s)	235, 600, 793, 962, 2611, 2751
BseJI	GATNNNNATC	2 cut(s)	728, 1037
BseLI	CCNNNNNNNGG	4 cut(s)	1015, 1678, 2508, 2877
BseMII	CTCAG	5 cut(s)	380, 1004, 1341, 1895, 2063
BseNI	ACTGG	5 cut(s)	543, 1009, 1485, 2397, 2493
BseRI	GAGGAG	6 cut(s)	283, 288, 815, 1112, 1604, 2796
BseXI	GCAGC	4 cut(s)	199, 2373, 2484, 2873
BseYI	CCCAGC	1 cut(s)	1014
BsgI	GTGCAG	1 cut(s)	131
Bsh1236I	CGCG	1 cut(s)	2841
BshFI	GGCC	3 cut(s)	374, 1728, 2227
BshVI	ATCGAT	1 cut(s)	337
BsiHKAI	GWGCWC	3 cut(s)	1146, 2100, 2427
BsiSI	CCGG	3 cut(s)	133, 919, 1628
BslFI	GGGAC	1 cut(s)	1577
BslI	CCNNNNNNNGG	4 cut(s)	1015, 1678, 2508, 2877
BsmAI	GTCTC	4 cut(s)	1163, 1550, 1743, 2307
BsmBI	CGTCTC	2 cut(s)	1163, 1550
BsmFI	GGGAC	1 cut(s)	1577
BsmI	GAATGC	1 cut(s)	2202
BsnI	GGCC	3 cut(s)	374, 1728, 2227
Bso31I	GGTCTC	2 cut(s)	1743, 2307
Bsp119I	TTCGAA	2 cut(s)	1660, 2538
Bsp1286I	GDGCHC	3 cut(s)	1146, 2100, 2427
BspACI	CCGC	3 cut(s)	600, 1561, 1981
BspANI	GGCC	3 cut(s)	374, 1728, 2227
BspCNI	CTCAG	5 cut(s)	381, 1003, 1342, 1896, 2064
BspDI	ATCGAT	1 cut(s)	337
BspFNI	CGCG	1 cut(s)	2841
BspHI	TCATGA	2 cut(s)	490, 1357
BspLI	GGNNCC	1 cut(s)	352
BspMAI	CTGCAG	2 cut(s)	2655, 2765
BspPI	GGATC	5 cut(s)	44, 124, 1362, 2011, 2332
BspQI	GCTCTTC	1 cut(s)	2088
BspT104I	TTCGAA	2 cut(s)	1660, 2538
BspTI	CTTAAG	1 cut(s)	2506
BspTNI	GGTCTC	2 cut(s)	1743, 2307
BsrI	ACTGG	5 cut(s)	543, 1009, 1485, 2397, 2493
BssECI	CCNNGG	6 cut(s)	46, 133, 1756, 2521, 2563, 2750
BssNAI	GTATAC	1 cut(s)	2380
Bst1107I	GTATAC	1 cut(s)	2380
Bst2UI	CCWGG	4 cut(s)	265, 1758, 2565, 2752
Bst4CI	ACNGT	9 cut(s)	22, 283, 1023, 1174, 1192, 1690, 1916, 2118, 2675
Bst6I	CTCTTC	5 cut(s)	281, 714, 1076, 1714, 2088
BstAFI	CTTAAG	1 cut(s)	2506
BstAPI	GCANNNNNTGC	2 cut(s)	1928, 2659
BstBAI	YACGTR	1 cut(s)	1196
BstBI	TTCGAA	2 cut(s)	1660, 2538
BstC8I	GCNNGC	5 cut(s)	69, 313, 960, 1146, 1574
BstDEI	CTNAG	8 cut(s)	389, 990, 1157, 1350, 1823, 1904, 2072, 2216
BstF5I	GGATG	6 cut(s)	235, 600, 793, 962, 2611, 2751
BstFNI	CGCG	1 cut(s)	2841
BstHHI	GCGC	1 cut(s)	2664
BstMAI	GTCTC	4 cut(s)	1163, 1550, 1743, 2307
BstMWI	GCNNNNNNNGC	6 cut(s)	118, 959, 1928, 2074, 2650, 2659
BstNI	CCWGG	4 cut(s)	265, 1758, 2565, 2752
BstNSI	RCATGY	2 cut(s)	2266, 2810
BstPAI	GACNNNNGTC	1 cut(s)	2150
BstSCI	CCNGG	5 cut(s)	132, 263, 1756, 2563, 2750
BstSFI	CTRYAG	3 cut(s)	808, 2651, 2761
BstUI	CGCG	1 cut(s)	2841
BstV1I	GCAGC	4 cut(s)	199, 2373, 2484, 2873
BstV2I	GAAGAC	2 cut(s)	1145, 1669
BstX2I	RGATCY	4 cut(s)	1490, 1975, 2003, 2324
BstYI	RGATCY	4 cut(s)	1490, 1975, 2003, 2324
BstZ17I	GTATAC	1 cut(s)	2380
Bsu15I	ATCGAT	1 cut(s)	337
Bsu36I	CCTNAGG	1 cut(s)	1350
BsuI	GTATCC	1 cut(s)	824
BsuRI	GGCC	3 cut(s)	374, 1728, 2227
BsuTUI	ATCGAT	1 cut(s)	337
BtsCI	GGATG	6 cut(s)	235, 600, 793, 962, 2611, 2751
BtsI	GCAGTG	1 cut(s)	2871
BtsIMutI	CAGTG	5 cut(s)	536, 1016, 1144, 1643, 2871
Cac8I	GCNNGC	5 cut(s)	69, 313, 960, 1146, 1574
CciI	TCATGA	2 cut(s)	490, 1357
CfoI	GCGC	1 cut(s)	2664
Cfr13I	GGNCC	3 cut(s)	351, 841, 1625
ClaI	ATCGAT	1 cut(s)	337
CseI	GACGC	3 cut(s)	158, 557, 644
Csp6I	GTAC	4 cut(s)	182, 279, 1193, 1958
CviAII	CATG	8 cut(s)	491, 1358, 1430, 1550, 2263, 2375, 2641, 2807
CviQI	GTAC	4 cut(s)	182, 279, 1193, 1958
DdeI	CTNAG	8 cut(s)	389, 990, 1157, 1350, 1823, 1904, 2072, 2216
EaeI	YGGCCR	2 cut(s)	372, 1726
Eam1104I	CTCTTC	5 cut(s)	281, 714, 1076, 1714, 2088
EarI	CTCTTC	5 cut(s)	281, 714, 1076, 1714, 2088
Ecl136II	GAGCTC	1 cut(s)	2425
Eco24I	GRGCYC	1 cut(s)	2427
Eco31I	GGTCTC	2 cut(s)	1743, 2307
Eco32I	GATATC	1 cut(s)	2271
Eco47I	GGWCC	3 cut(s)	351, 841, 1625
Eco53kI	GAGCTC	1 cut(s)	2425
Eco57I	CTGAAG	7 cut(s)	27, 51, 432, 2228, 2276, 2486, 2690
Eco81I	CCTNAGG	1 cut(s)	1350
EcoICRI	GAGCTC	1 cut(s)	2425
EcoRI	GAATTC	1 cut(s)	874
EcoRII	CCWGG	4 cut(s)	263, 1756, 2563, 2750
EcoRV	GATATC	1 cut(s)	2271
EcoT22I	ATGCAT	1 cut(s)	1213
EcoT38I	GRGCYC	1 cut(s)	2427
Esp3I	CGTCTC	2 cut(s)	1163, 1550
FaeI	CATG	8 cut(s)	494, 1361, 1433, 1553, 2266, 2378, 2644, 2810
FalI	AAGNNNNNCTT	2 cut(s)	430, 462
FaqI	GGGAC	1 cut(s)	1577
FatI	CATG	8 cut(s)	490, 1357, 1429, 1549, 2262, 2374, 2640, 2806
FauI	CCCGC	1 cut(s)	1554
FauNDI	CATATG	2 cut(s)	854, 1462
FbaI	TGATCA	2 cut(s)	973, 2473
FblI	GTMKAC	3 cut(s)	1123, 1162, 2379
Fnu4HI	GCNGC	5 cut(s)	213, 601, 2387, 2498, 2862
FokI	GGATG	6 cut(s)	242, 607, 800, 949, 2618, 2758
FriOI	GRGCYC	1 cut(s)	2427
Fsp4HI	GCNGC	5 cut(s)	213, 601, 2387, 2498, 2862
FspBI	CTAG	6 cut(s)	179, 575, 998, 1886, 1973, 2238
FspI	TGCGCA	1 cut(s)	2663
GlaI	GCGC	1 cut(s)	2663
GluI	GCNGC	5 cut(s)	213, 601, 2387, 2498, 2862
GsaI	CCCAGC	1 cut(s)	1018
GsuI	CTGGAG	3 cut(s)	2333, 2414, 2510
HaeIII	GGCC	3 cut(s)	374, 1728, 2227
HapII	CCGG	3 cut(s)	133, 919, 1628
HgaI	GACGC	3 cut(s)	158, 557, 644
HhaI	GCGC	1 cut(s)	2664
Hin1II	CATG	8 cut(s)	494, 1361, 1433, 1553, 2266, 2378, 2644, 2810
Hin6I	GCGC	1 cut(s)	2662
HinP1I	GCGC	1 cut(s)	2662
HincII	GTYRAC	2 cut(s)	1612, 2445
HindII	GTYRAC	2 cut(s)	1612, 2445
HpaI	GTTAAC	2 cut(s)	1612, 2445
HpaII	CCGG	3 cut(s)	133, 919, 1628
HphI	GGTGA	7 cut(s)	446, 553, 565, 922, 1543, 2342, 2483
Hpy166II	GTNNAC	6 cut(s)	1124, 1163, 1612, 1891, 2380, 2445
Hpy8I	GTNNAC	6 cut(s)	1124, 1163, 1612, 1891, 2380, 2445
HpyCH4III	ACNGT	9 cut(s)	22, 283, 1023, 1174, 1192, 1690, 1916, 2118, 2675
HpyCH4IV	ACGT	2 cut(s)	1195, 2147
HpyF10VI	GCNNNNNNNGC	6 cut(s)	118, 959, 1928, 2074, 2650, 2659
HpyF3I	CTNAG	8 cut(s)	389, 990, 1157, 1350, 1823, 1904, 2072, 2216
HpySE526I	ACGT	2 cut(s)	1195, 2147
Hsp92II	CATG	8 cut(s)	494, 1361, 1433, 1553, 2266, 2378, 2644, 2810
HspAI	GCGC	1 cut(s)	2662
Ksp22I	TGATCA	2 cut(s)	973, 2473
KspAI	GTTAAC	2 cut(s)	1612, 2445
LguI	GCTCTTC	1 cut(s)	2088
LmnI	GCTCC	2 cut(s)	2065, 2430
Lsp1109I	GCAGC	4 cut(s)	199, 2373, 2484, 2873
LweI	GCATC	6 cut(s)	199, 324, 971, 1063, 1092, 2736
MaeI	CTAG	6 cut(s)	179, 575, 998, 1886, 1973, 2238
MaeII	ACGT	2 cut(s)	1195, 2147
MaeIII	GTNAC	5 cut(s)	16, 1369, 1863, 2412, 2866
MfeI	CAATTG	4 cut(s)	187, 1437, 2163, 2736
MflI	RGATCY	4 cut(s)	1490, 1975, 2003, 2324
MhlI	GDGCHC	3 cut(s)	1146, 2100, 2427
MlsI	TGGCCA	2 cut(s)	374, 1728
MluNI	TGGCCA	2 cut(s)	374, 1728
MlyI	GAGTC	6 cut(s)	96, 853, 1375, 1836, 1915, 2243
MmeI	TCCRAC	4 cut(s)	498, 841, 1981, 2226
Mox20I	TGGCCA	2 cut(s)	374, 1728
Mph1103I	ATGCAT	1 cut(s)	1213
MscI	TGGCCA	2 cut(s)	374, 1728
MslI	CAYNNNNRTG	1 cut(s)	1139
Msp20I	TGGCCA	2 cut(s)	374, 1728
MspCI	CTTAAG	1 cut(s)	2506
MspI	CCGG	3 cut(s)	133, 919, 1628
MspR9I	CCNGG	5 cut(s)	134, 265, 1758, 2565, 2752
MunI	CAATTG	4 cut(s)	187, 1437, 2163, 2736
Mva1269I	GAATGC	1 cut(s)	2202
MvaI	CCWGG	4 cut(s)	265, 1758, 2565, 2752
MvnI	CGCG	1 cut(s)	2841
MwoI	GCNNNNNNNGC	6 cut(s)	118, 959, 1928, 2074, 2650, 2659
NciI	CCSGG	1 cut(s)	134
NdeI	CATATG	2 cut(s)	854, 1462
NlaIII	CATG	8 cut(s)	494, 1361, 1433, 1553, 2266, 2378, 2644, 2810
NlaIV	GGNNCC	1 cut(s)	352
NmuCI	GTSAC	1 cut(s)	2866
NsbI	TGCGCA	1 cut(s)	2663
NsiI	ATGCAT	1 cut(s)	1213
NspI	RCATGY	2 cut(s)	2266, 2810
NspV	TTCGAA	2 cut(s)	1660, 2538
PagI	TCATGA	2 cut(s)	490, 1357
PciI	ACATGT	2 cut(s)	2262, 2806
PciSI	GCTCTTC	1 cut(s)	2088
PctI	GAATGC	1 cut(s)	2202
PfeI	GAWTC	6 cut(s)	239, 891, 1498, 1882, 2540, 2757
PfoI	TCCNGGA	1 cut(s)	263
PkrI	GCNGC	5 cut(s)	214, 602, 2388, 2499, 2863
PleI	GAGTC	6 cut(s)	95, 853, 1375, 1835, 1914, 2242
PpsI	GAGTC	6 cut(s)	95, 853, 1375, 1835, 1914, 2242
Ppu21I	YACGTR	1 cut(s)	1196
PscI	ACATGT	2 cut(s)	2262, 2806
PshAI	GACNNNNGTC	1 cut(s)	2150
PshBI	ATTAAT	1 cut(s)	1445
PsiI	TTATAA	2 cut(s)	411, 2822
Psp124BI	GAGCTC	1 cut(s)	2427
Psp6I	CCWGG	4 cut(s)	263, 1756, 2563, 2750
PspFI	CCCAGC	1 cut(s)	1014
PspGI	CCWGG	4 cut(s)	263, 1756, 2563, 2750
PspN4I	GGNNCC	1 cut(s)	352
PspPI	GGNCC	3 cut(s)	351, 841, 1625
PstI	CTGCAG	2 cut(s)	2655, 2765
PsuI	RGATCY	4 cut(s)	1490, 1975, 2003, 2324
RsaI	GTAC	4 cut(s)	183, 280, 1194, 1959
RsaNI	GTAC	4 cut(s)	182, 279, 1193, 1958
RseI	CAYNNNNRTG	1 cut(s)	1139
SacI	GAGCTC	1 cut(s)	2427
SapI	GCTCTTC	1 cut(s)	2088
SatI	GCNGC	5 cut(s)	213, 601, 2387, 2498, 2862
Sau96I	GGNCC	3 cut(s)	351, 841, 1625
SchI	GAGTC	6 cut(s)	96, 853, 1375, 1836, 1915, 2243
ScrFI	CCNGG	5 cut(s)	134, 265, 1758, 2565, 2752
SduI	GDGCHC	3 cut(s)	1146, 2100, 2427
SfaNI	GCATC	6 cut(s)	199, 324, 971, 1063, 1092, 2736
SfcI	CTRYAG	3 cut(s)	808, 2651, 2761
SfuI	TTCGAA	2 cut(s)	1660, 2538
SinI	GGWCC	3 cut(s)	351, 841, 1625
SmiMI	CAYNNNNRTG	1 cut(s)	1139
SmlI	CTYRAG	5 cut(s)	79, 861, 1894, 2506, 2723
SmoI	CTYRAG	5 cut(s)	79, 861, 1894, 2506, 2723
SpeI	ACTAGT	1 cut(s)	178
SsiI	CCGC	3 cut(s)	600, 1561, 1981
SspI	AATATT	1 cut(s)	2833
SspMI	CTAG	6 cut(s)	179, 575, 998, 1886, 1973, 2238
SstI	GAGCTC	1 cut(s)	2427
StyD4I	CCNGG	5 cut(s)	132, 263, 1756, 2563, 2750
TaaI	ACNGT	9 cut(s)	22, 283, 1023, 1174, 1192, 1690, 1916, 2118, 2675
TaiI	ACGT	2 cut(s)	1198, 2150
TaqI	TCGA	5 cut(s)	337, 395, 878, 1660, 2538
TaqII	GACCGA	1 cut(s)	2289
TauI	GCSGC	1 cut(s)	603
TfiI	GAWTC	6 cut(s)	239, 891, 1498, 1882, 2540, 2757
TscAI	CASTG	5 cut(s)	543, 1016, 1144, 1650, 2871
TseFI	GTSAC	1 cut(s)	2866
TseI	GCWGC	4 cut(s)	212, 2386, 2497, 2861
Tsp45I	GTSAC	1 cut(s)	2866
TspRI	CASTG	5 cut(s)	543, 1016, 1144, 1650, 2871
Vha464I	CTTAAG	1 cut(s)	2506
VpaK11BI	GGWCC	3 cut(s)	351, 841, 1625
VspI	ATTAAT	1 cut(s)	1445
XapI	RAATTY	6 cut(s)	74, 397, 768, 874, 2059, 2582
XbaI	TCTAGA	1 cut(s)	1972
XceI	RCATGY	2 cut(s)	2266, 2810
XcmI	CCANNNNNNNNNTGG	1 cut(s)	781
XmiI	GTMKAC	3 cut(s)	1123, 1162, 2379
XspI	CTAG	6 cut(s)	179, 575, 998, 1886, 1973, 2238
Zsp2I	ATGCAT	1 cut(s)	1213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.