RchiOBHm_Chr6g0265091

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000069
Physical Location & Seq
Reverse (-)
20439892 .. 20442816
2925 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ23776

Sequence Viewer

Length: 2757 bp
ATGGCAGAACTTGTGGTGTCCGGCGTTGCTAAAAGCCTTGCTGACCTGCTCAAGGACGTGCTCGTGGAGGAATCTAAACCCCTGCTAAGGGTGAGGCAAAACGTTAGGGATATCCAAAAAGAATTGACGCTGATAAATTGTGTCTTGAAAGATGCCGACGAGAAGCAAGGGCAAGATAATAGCCTTCAAAATTGGGTTTCAGACATACGAGAAATCGCTTATGATGCTGAGGATGTCATTCGAACGTTTTCCATCAGACATGTAATGCGAATCTCAAAGCCAGTCAAATGGTATGCCTGGTTGAATCTCGGCCAACTTCGACACCGTTGCAAAGTTGGGTCTGAGATTAAAGCCATAAAAGCTGAAATCTCTAGGCTTCGCATATCTTCCCAAACCTATAACTTGATTTCTGTTGGACAAGGGCCATCCAGCAATGCTCTTGATGATCGGCAGCAATATTCCCATGAAAATGAGGATATTGTTGGGTTCGAAAGTAGCATAAATGAAATAGTGGATGATCTTGTGGATGATAGTCGACCTGGTTGGGTCGTGTCAATTTGGGGCATGGCAGGTATTGGAAAGACAACTCTGGCCAGGGAACTTTACCGTAATGGTCGAATTAGGCACCATTTTGATGGTTTCGGATGGGTTTGTATATCTCAACAATTTAAACCAGAAGATGCTTGGGAACAAGTTTTGTTCAATCTTGTCGCTCCATCCAAAGAGGAGAGGCAAAATATTAAAGAGCTGAGACAGAATGAGCTTGCAGAAAAGCTTTATCAGGTTCAGATAGAGAAGAAATGTTTGGTGATCCTTGATGACATTTGGAAGGCCGAGGACTGGGACAAGCTACGTCACGCTTTCCCAACTGCCGGAAAAGGGCGCAGCAGGGTATTGGTTACAACTCGTTTTAGGAATATTGTAGTTCCTGATTACAGTGGTGGTCGTCTTCCTCATGAACTAAATTTTTTGTCTGTAGAAGACGGATGGGAGTTACTTCGGAGGAAGGCATTTCCAGGGGCGAAGAATAATCCAGATTTTACCGTTGGCGAAGTTAAGGAGAATTTAGGGAAGGAAATAGTTGAGAAATGTGATGGCTTACCATTGGCTATTGTTGTACTCGGAGGACTCTTAGCAACTAAAGAATCAGTACACGATTGGGAGAGGATGAATGAAGATGTGCCATATTTTTTACAGCAATCCGACGGTCACAATAATATACTACCAAAGGTTTTGGCTCTAAGCTATAATGAGCTGCCACACAAATTGAAACCTTGTTTCCTTTATTTGAGTCATTTCCCAGAGGATGCTGCAATACCTAAAAAGAAATTGATTCAATTATGGATTGCAGAGGGCATTGTATCACTTGAACAGGAGACAGATAAAGTGCTAGAGGATGTGGCAGAAGGCCACTTGGTATCCTTGATCAATAGGTGCATGGTTCAAGTGGCAGATTTTGGGTCTACTGGAAGAATCAAAACGTGCCGCCTCCATGATATTATGCGTGATTTTTGCTTGTTAAGAGCCGAGAAGGACAACTTTCTCAAGCTTGTTCGCTATTCAAATGGAAGTGATGCTTCTTTTTTAAGCCTGCCATCAGGTAAAACGCGTAGACTTGCTATCTACTTGCCTGAAGATGTTGATAGATTTATCTCATCACCACGCAAACAATATTCCAACCTCAGGTCACTTCTGTATTTCCATGGGAAAAGGTGTAGAGTGGAGGATTGGCACCTCATTAAAAAGATTTTGAACCTCAAAATTCTCAGAGTCCTAGATCTTGAAGGGGTTAATGGACCTTATGGACAGCTGCCAAAAGAAATTGGGGACCTCATCCAGCTGCAGTTTCTAAGTTTAAAGAAAACATATATTGGAGTTCTTCCACCATCCATTGGTAATTTGATCTTCTTGAAAACCCTAAATTTGCAGACTATTAGTAAATTTAGTAGGGATTCAACAGTACAAATTCCAAATGTGATATGGAAGATGACGAATTTGACCCATTTATATCTTCCCAAGTGGTGTGGCGACATGGTTAATGAGCTGAAGTTGTCCAATCTTCACCGCTTGCAGACACTAGTGAATTTCCCTGCAAACAAATGTGATGTAAAAGATCTTCTGAAATTGACTAAACTGAGGAAACTGGTGCTCAATGACCCAGCGCATTTCAAAAGTTTAGTAGCAATTTTCAGTCCCCCAAATGATGTCACATTAAGATGCCTTCAGTCCTTGTCCTTTAAAAGTGACACACTTGCATTCCCCGATGAGGTAGTAGATGTCAGGCCATTGCTGTCAAGCTGTTCAGCTCTTCAGAAGTTTCATGTGGAAGGACGAATAGAAAAGCTACCAGAATACCTTCACTTTCCTCAAAACATTGCCAAGTTAACTTTATGGGGTTCTGATCTTGTGGAAGATCCAATCCCAATATTGGAGAAGCTGCCTAACTTGAGAATTCTGAGCGGATGGCAAATGTTCATGGGGAAGAAAATGGTTTTCTCTGATCAAGGTTTTCCTAAACTCAGAAGTCTACTGCTTCGTGGCTTGAAGCATTTTGAGGACTGGATGATGGAGGAAGGAGCTATGCCGAGTCTTTATCGATTGGAAATCTCAAATTGCATTAAACTGAAGACAATTCCTGCTGCAGTAAGTTCTGTCAAAACTCTTCAGGAATTGGAGATATGCGGGTGCCTATTCAAGATCAAAGAAGAGGACTTTTACAAAGTCCAACATGTGCCCTCCGTTGTGATTCGGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

918

Amino Acids

105.07

Weight (kDa)

8.58

Isoelectric Point (pI)

41.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rx_N PF18052 11 - 89 6.1e-21 Rx N-terminal domain
NB-ARC PF00931 164 - 340 1.1e-39 NB-ARC domain
WHD_DRP PF23559 433 - 504 6.6e-18 Disease resistance protein Winged helix domain
LRR_14 PF23598 579 - 878 1.5e-35 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000069)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G10920 AT1G10920 AT1G10920 AT1G10920 AT1G10920 AT1G50180 AT1G53350 AT1G58390 AT1G58390 AT1G58400 AT1G58400 AT1G58400 AT1G58410 AT1G58410 AT1G58410 AT1G58410 AT1G58602 AT1G58602 AT1G58807 AT1G58807 AT1G58848 AT1G58848 AT1G59124 AT1G59124 AT1G59218 AT1G59218 AT1G59218 AT1G59620 AT1G59780 AT1G59780 AT5G35450 AT5G35450 AT5G43470 AT5G43470 AT5G43470 AT5G43470 AT5G48620 AT5G48620 AT5G48620 AT5G48620 AT5G48620 AT5G48620
fragaria_vesca FvH4_4g04072 FvH4_4g22931 FvH4_4g22931 FvH4_4g22940 FvH4_6g49940 FvH4_6g49940 FvH4_7g08100 FvH4_7g08870 FvH4_7g08870 FvH4_7g09280 FvH4_7g09290 FvH4_7g15190 FvH4_7g15200 FvH4_7g15240 FvH4_7g15240 FvH4_7g33440
malus_domestica MD00G1174600.v1.1 MD01G1113700.v1.1 MD03G1071300.v1.1 MD04G1041500.v1.1 MD04G1238000.v1.1 MD07G1029000.v1.1 MD07G1092100.v1.1 MD07G1092300.v1.1 MD07G1092600.v1.1 MD12G1256300.v1.1 MD13G1128200.v1.1 MD13G1128400.v1.1 MD17G1268000.v1.1
prunus_persica Prupe.1G041300_v2.0.a1 Prupe.1G041300_v2.0.a1 Prupe.1G042900_v2.0.a1 Prupe.1G043100_v2.0.a1 Prupe.1G043100_v2.0.a1 Prupe.1G043100_v2.0.a1 Prupe.1G043100_v2.0.a1 Prupe.1G043600_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G046700_v2.0.a1 Prupe.1G047700_v2.0.a1 Prupe.1G047900_v2.0.a1 Prupe.1G048000_v2.0.a1 Prupe.1G048500_v2.0.a1 Prupe.1G048500_v2.0.a1 Prupe.1G049900_v2.0.a1 Prupe.1G051500_v2.0.a1 Prupe.1G051800_v2.0.a1 Prupe.1G051900_v2.0.a1 Prupe.1G052200_v2.0.a1 Prupe.1G194900_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217900_v2.0.a1 Prupe.1G217900_v2.0.a1 Prupe.1G217900_v2.0.a1 Prupe.1G217900_v2.0.a1 Prupe.1G217900_v2.0.a1 Prupe.2G117200_v2.0.a1 Prupe.2G117200_v2.0.a1 Prupe.2G117200_v2.0.a1 Prupe.2G117200_v2.0.a1 Prupe.2G117300_v2.0.a1 Prupe.2G117400_v2.0.a1 Prupe.2G117500_v2.0.a1 Prupe.2G117700_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G119900_v2.0.a1
pyrus_communis pycom03g05750 pycom04g21110 pycom07g07530 pycom07g07590 pycom13g11110 pycom13g11140 pycom13g11160 pycom13g11170 pycom17g26680
rosa_chinensis RchiOBHm_Chr1g0341231 RchiOBHm_Chr1g0344091 RchiOBHm_Chr1g0344161 RchiOBHm_Chr1g0345001 RchiOBHm_Chr1g0345351 RchiOBHm_Chr1g0345371 RchiOBHm_Chr1g0345391 RchiOBHm_Chr1g0345531 RchiOBHm_Chr1g0345551 RchiOBHm_Chr1g0345571 RchiOBHm_Chr1g0345581 RchiOBHm_Chr1g0345661 RchiOBHm_Chr1g0345691 RchiOBHm_Chr1g0345761 RchiOBHm_Chr1g0345791 RchiOBHm_Chr1g0345821 RchiOBHm_Chr1g0345911 RchiOBHm_Chr1g0345941 RchiOBHm_Chr1g0357611 RchiOBHm_Chr1g0357911 RchiOBHm_Chr1g0357921 RchiOBHm_Chr1g0357931 RchiOBHm_Chr1g0357971 RchiOBHm_Chr1g0358121 RchiOBHm_Chr1g0383491 RchiOBHm_Chr1g0383511 RchiOBHm_Chr1g0383521 RchiOBHm_Chr3g0480581 RchiOBHm_Chr4g0394341 RchiOBHm_Chr4g0394361 RchiOBHm_Chr4g0394411 RchiOBHm_Chr4g0394441 RchiOBHm_Chr4g0407681 RchiOBHm_Chr4g0429191 RchiOBHm_Chr4g0429201 RchiOBHm_Chr4g0429211 RchiOBHm_Chr4g0429221 RchiOBHm_Chr6g0265091
rosa_laevigata RLG00000007088 RLG00000008700 RLG00000009190 RLG00000009702 RLG00000014210 RLG00000028829 RLG00000028833 RLG00000028837 RLG00000028838 RLG00000028921 RLG00000028926
rosa_multiflora Rmu_co8366955.1_g000001 Rmu_co8394205.1_g000001 Rmu_sc0000019.1_g000001 Rmu_sc0000054.1_g000031 Rmu_sc0000054.1_g000033 Rmu_sc0000200.1_g000002 Rmu_sc0000200.1_g000007 Rmu_sc0000200.1_g000018 Rmu_sc0000200.1_g000020 Rmu_sc0000200.1_g000021 Rmu_sc0000251.1_g000012 Rmu_sc0000251.1_g000015 Rmu_sc0000251.1_g000028 Rmu_sc0000253.1_g000015 Rmu_sc0000255.1_g000045 Rmu_sc0000255.1_g000046 Rmu_sc0001292.1_g000013 Rmu_sc0001292.1_g000018 Rmu_sc0001292.1_g000028 Rmu_sc0001292.1_g000029 Rmu_sc0001349.1_g000006 Rmu_sc0001349.1_g000014 Rmu_sc0001582.1_g000006 Rmu_sc0001582.1_g000018 Rmu_sc0001582.1_g000020 Rmu_sc0001692.1_g000007 Rmu_sc0001692.1_g000024 Rmu_sc0001692.1_g000026 Rmu_sc0001692.1_g000029 Rmu_sc0001692.1_g000030 Rmu_sc0001835.1_g000006 Rmu_sc0001835.1_g000010 Rmu_sc0002071.1_g000005 Rmu_sc0002276.1_g000002 Rmu_sc0002276.1_g000009 Rmu_sc0002329.1_g000018 Rmu_sc0002329.1_g000023 Rmu_sc0002329.1_g000025 Rmu_sc0002523.1_g000005 Rmu_sc0003573.1_g000005 Rmu_sc0003573.1_g000006 Rmu_sc0004099.1_g000021 Rmu_sc0005812.1_g000009 Rmu_sc0006271.1_g000002 Rmu_sc0006287.1_g000038 Rmu_sc0006439.1_g000008 Rmu_sc0007456.1_g000004 Rmu_sc0007581.1_g000009 Rmu_sc0007849.1_g000014 Rmu_sc0008115.1_g000012 Rmu_sc0010521.1_g000004 Rmu_sc0012471.1_g000017 Rmu_sc0014762.1_g000001 Rmu_sc0015150.1_g000003 Rmu_sc0017221.1_g000001 Rmu_sc0017299.1_g000001 Rmu_sc0017299.1_g000002 Rmu_sc0021457.1_g000001 Rmu_sc0022067.1_g000001 Rmu_sc0033275.1_g000001 Rmu_ssc0000245.1_g000012 Rmu_ssc0000359.1_g000035 Rmu_ssc0000359.1_g000067 Rmu_ssc0000359.1_g000072 Rmu_ssc0000434.1_g000005 Rmu_ssc0000434.1_g000007
rosa_roxburghii Rroxscaffold_4G00298420 Rroxscaffold_4G00298720 Rroxscaffold_4G00308990 Rroxscaffold_4G00309000 Rroxscaffold_4G00309010 Rroxscaffold_4G00309050 Rroxscaffold_4G00309070 Rroxscaffold_4G00309100 Rroxscaffold_4G00310030 Rroxscaffold_4G00310050 Rroxscaffold_4G00311880 Rroxscaffold_5G00339420 Rroxscaffold_5G00339450 Rroxscaffold_5G00344880 Rroxscaffold_5G00352270 Rroxscaffold_5G00362240 Rroxscaffold_5G00370840 Rroxscaffold_7G00202970
rosa_rugosa Rorug01G0159100.1 Rorug01G0159200.1 Rorug01G0171700 Rorug01G0171900 Rorug01G0172000 Rorug01G0191700 Rorug01G0191800 Rorug01G0256900 Rorug01G0257000 Rorug01G0257100 Rorug03G0198000 Rorug03G0366300.1 Rorug03G0366400.1 Rorug03G0366500.1 Rorug04G0081200 Rorug04G0081200 Rorug04G0081200 Rorug04G0233700 Rorug04G0233800 Rorug04G0233800 Rorug06G0013300
rosa_samantha Rh1CG138800 Rh1CG161300 Rh1CG173800 Rh1CG179800 Rh1CG180100 Rh1CG180500 Rh1CG180800 Rh1CG180900 Rh1CG194100 Rh1DG205100 Rh3AG236300 Rh4AG052000 Rh4AG052100 Rh4AG145900 Rh4AG289700 Rh4AG289800 Rh6AG136800 Rh6AG137300 Rh6BG133600 Rh6CG132000 Rh6CG134000 Rh6DG119300
rosa_wichuraiana Rw0G003420 Rw1G015500 Rw1G016110 Rw1G016180 Rw1G016210 Rw1G016230 Rw1G016280 Rw1G016440 Rw1G016450 Rw1G016460 Rw1G016480 Rw1G017490 Rw1G024140 Rw1G024160 Rw3G022530 Rw4G004140 Rw4G004190 Rw4G011850 Rw6G011800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 54, 560
AccB1I GGYRCC 3 cut(s) 624, 1731, 2685
AccB7I CCANNNNNTGG 1 cut(s) 1892
AccBSI CCGCTC 1 cut(s) 2460
AccI GTMKAC 4 cut(s) 535, 1463, 1612, 2527
AccII CGCG 1 cut(s) 1609
AciI CCGC 4 cut(s) 1486, 2065, 2460, 2682
AclI AACGTT 2 cut(s) 102, 245
AclWI GGATC 2 cut(s) 805, 2408
AcoI YGGCCR 2 cut(s) 310, 591
AcsI RAATTY 9 cut(s) 964, 1063, 1761, 1921, 1940, 1965, 1993, 2083, 2451
AcuI CTGAAG 6 cut(s) 1653, 2066, 2207, 2294, 2645, 2648
AfaI GTAC 3 cut(s) 1119, 1152, 1962
AflIII ACRYGT 3 cut(s) 259, 1607, 2728
AhlI ACTAGT 1 cut(s) 2077
AjiI CACGTC 1 cut(s) 58
AjnI CCWGG 4 cut(s) 296, 538, 593, 1015
AjuI GAANNNNNNNTTGG 2 cut(s) 788, 820
Alw21I GWGCWC 2 cut(s) 63, 2151
Alw26I GTCTC 2 cut(s) 745, 1370
AlwI GGATC 2 cut(s) 805, 2408
AoxI GGCC 6 cut(s) 310, 422, 591, 831, 1408, 2282
ApeKI GCWGC 8 cut(s) 451, 885, 1255, 1310, 1810, 1840, 2437, 2639
ApoI RAATTY 9 cut(s) 964, 1063, 1761, 1921, 1940, 1965, 1993, 2083, 2451
Asp700I GAANNNNTTC 2 cut(s) 247, 2355
AspLEI GCGC 2 cut(s) 885, 2164
AspS9I GGNCC 3 cut(s) 422, 1796, 1828
AsuHPI GGTGA 4 cut(s) 103, 820, 1650, 2054
AsuII TTCGAA 2 cut(s) 241, 489
AvaII GGWCC 2 cut(s) 1796, 1828
AxyI CCTNAGG 1 cut(s) 1682
BaeGI GKGCMC 1 cut(s) 2736
BalI TGGCCA 1 cut(s) 593
BanI GGYRCC 3 cut(s) 624, 1731, 2685
BarI GAAGNNNNNNTAC 2 cut(s) 2100, 2132
BauI CACGAG 1 cut(s) 62
BbsI GAAGAC 3 cut(s) 941, 987, 2633
Bbv12I GWGCWC 2 cut(s) 63, 2151
BbvCI CCTCAGC 1 cut(s) 228
BbvI GCAGC 8 cut(s) 463, 897, 1242, 1297, 1797, 1827, 2424, 2626
BcgI CGANNNNNNTGC 2 cut(s) 309, 343
BciT130I CCWGG 4 cut(s) 298, 540, 595, 1017
BciVI GTATCC 1 cut(s) 1429
BclI TGATCA 2 cut(s) 1425, 2500
BcoDI GTCTC 2 cut(s) 745, 1370
BcuI ACTAGT 1 cut(s) 2077
BfaI CTAG 4 cut(s) 372, 1391, 1775, 2078
BfmI CTRYAG 3 cut(s) 975, 1841, 2640
BfuAI ACCTGC 2 cut(s) 54, 560
BfuI GTATCC 1 cut(s) 1429
BglII AGATCT 2 cut(s) 1777, 2113
BisI GCNGC 9 cut(s) 452, 886, 1256, 1311, 1486, 1811, 1841, 2438, 2640
BlsI GCNGC 9 cut(s) 453, 887, 1257, 1312, 1487, 1812, 1842, 2439, 2641
Bme1390I CCNGG 4 cut(s) 298, 540, 595, 1017
Bme18I GGWCC 2 cut(s) 1796, 1828
BmgBI CACGTC 1 cut(s) 58
BmgT120I GGNCC 3 cut(s) 422, 1796, 1828
BmiI GGNNCC 4 cut(s) 626, 1733, 1829, 2687
BmrFI CCNGG 4 cut(s) 298, 540, 595, 1017
BmrI ACTGGG 1 cut(s) 850
BmsI GCATC 6 cut(s) 142, 214, 670, 1297, 1564, 2207
BmuI ACTGGG 1 cut(s) 850
BpiI GAAGAC 3 cut(s) 941, 987, 2633
Bpu10I CCTNAGC 2 cut(s) 86, 228
Bpu14I TTCGAA 2 cut(s) 241, 489
BpuEI CTTGAG 3 cut(s) 35, 1529, 2467
Bsa29I ATCGAT 1 cut(s) 2596
BsaJI CCNNGG 4 cut(s) 594, 834, 1016, 1702
Bse1I ACTGG 5 cut(s) 281, 845, 1471, 2148, 2564
Bse21I CCTNAGG 1 cut(s) 1682
Bse3DI GCAATG 3 cut(s) 439, 2285, 2373
BseBI CCWGG 4 cut(s) 298, 540, 595, 1017
BseCI ATCGAT 1 cut(s) 2596
BseDI CCNNGG 4 cut(s) 594, 834, 1016, 1702
BseMI GCAATG 3 cut(s) 439, 2285, 2373
BseMII CTCAG 8 cut(s) 219, 333, 740, 1696, 1780, 2126, 2447, 2533
BseNI ACTGG 5 cut(s) 281, 845, 1471, 2148, 2564
BseRI GAGGAG 1 cut(s) 740
BseSI GKGCMC 1 cut(s) 2736
BseXI GCAGC 8 cut(s) 463, 897, 1242, 1297, 1797, 1827, 2424, 2626
BseYI CCCAGC 1 cut(s) 2158
Bsh1236I CGCG 1 cut(s) 1609
BshFI GGCC 6 cut(s) 312, 424, 593, 833, 1410, 2284
BshNI GGYRCC 3 cut(s) 624, 1731, 2685
BshVI ATCGAT 1 cut(s) 2596
BsiHKAI GWGCWC 2 cut(s) 63, 2151
BsiSI CCGG 2 cut(s) 21, 873
BslFI GGGAC 3 cut(s) 857, 1841, 2178
BsmAI GTCTC 2 cut(s) 745, 1370
BsmFI GGGAC 3 cut(s) 857, 1841, 2178
BsmI GAATGC 1 cut(s) 2255
BsnI GGCC 6 cut(s) 312, 424, 593, 833, 1410, 2284
Bsp119I TTCGAA 2 cut(s) 241, 489
Bsp1286I GDGCHC 3 cut(s) 63, 2151, 2736
Bsp19I CCATGG 1 cut(s) 1702
BspACI CCGC 4 cut(s) 1486, 2065, 2460, 2682
BspANI GGCC 6 cut(s) 312, 424, 593, 833, 1410, 2284
BspCNI CTCAG 8 cut(s) 220, 334, 741, 1695, 1779, 2127, 2448, 2532
BspDI ATCGAT 1 cut(s) 2596
BspFNI CGCG 1 cut(s) 1609
BspHI TCATGA 1 cut(s) 955
BspLI GGNNCC 4 cut(s) 626, 1733, 1829, 2687
BspMAI CTGCAG 2 cut(s) 1845, 2644
BspMI ACCTGC 2 cut(s) 54, 560
BspPI GGATC 2 cut(s) 805, 2408
BspQI GCTCTTC 1 cut(s) 2313
BspT104I TTCGAA 2 cut(s) 241, 489
BspT107I GGYRCC 3 cut(s) 624, 1731, 2685
BsrBI CCGCTC 1 cut(s) 2460
BsrDI GCAATG 3 cut(s) 439, 2285, 2373
BsrI ACTGG 5 cut(s) 281, 845, 1471, 2148, 2564
BssECI CCNNGG 4 cut(s) 594, 834, 1016, 1702
BssSI CACGAG 1 cut(s) 62
BssT1I CCWWGG 1 cut(s) 1702
Bst2BI CACGAG 1 cut(s) 62
Bst2UI CCWGG 4 cut(s) 298, 540, 595, 1017
Bst4CI ACNGT 6 cut(s) 326, 608, 938, 1045, 1208, 1960
Bst6I CTCTTC 3 cut(s) 2313, 2667, 2700
BstBI TTCGAA 2 cut(s) 241, 489
BstC8I GCNNGC 3 cut(s) 765, 1592, 2069
BstDSI CCRYGG 1 cut(s) 1702
BstENI CCTNNNNNAGG 1 cut(s) 50
BstFNI CGCG 1 cut(s) 1609
BstHHI GCGC 2 cut(s) 885, 2164
BstMAI GTCTC 2 cut(s) 745, 1370
BstMWI GCNNNNNNNGC 2 cut(s) 224, 359
BstNI CCWGG 4 cut(s) 298, 540, 595, 1017
BstNSI RCATGY 2 cut(s) 263, 2732
BstSCI CCNGG 4 cut(s) 296, 538, 593, 1015
BstSFI CTRYAG 3 cut(s) 975, 1841, 2640
BstSLI GKGCMC 1 cut(s) 2736
BstUI CGCG 1 cut(s) 1609
BstV1I GCAGC 8 cut(s) 463, 897, 1242, 1297, 1797, 1827, 2424, 2626
BstV2I GAAGAC 3 cut(s) 941, 987, 2633
BstX2I RGATCY 3 cut(s) 1777, 2113, 2413
BstXI CCANNNNNNTGG 2 cut(s) 288, 635
BstYI RGATCY 3 cut(s) 1777, 2113, 2413
Bsu15I ATCGAT 1 cut(s) 2596
Bsu36I CCTNAGG 1 cut(s) 1682
BsuI GTATCC 1 cut(s) 1429
BsuRI GGCC 6 cut(s) 312, 424, 593, 833, 1410, 2284
BsuTUI ATCGAT 1 cut(s) 2596
BtgI CCRYGG 1 cut(s) 1702
BtrI CACGTC 1 cut(s) 58
BtsIMutI CAGTG 1 cut(s) 943
BveI ACCTGC 2 cut(s) 54, 560
Cac8I GCNNGC 3 cut(s) 765, 1592, 2069
CciI TCATGA 1 cut(s) 955
CfoI GCGC 2 cut(s) 885, 2164
Cfr13I GGNCC 3 cut(s) 422, 1796, 1828
ClaI ATCGAT 1 cut(s) 2596
CseI GACGC 1 cut(s) 136
CsiI ACCWGGT 1 cut(s) 538
Csp6I GTAC 3 cut(s) 1118, 1151, 1961
CspCI CAANNNNNGTGG 4 cut(s) 1248, 1283, 2005, 2040
CviQI GTAC 3 cut(s) 1118, 1151, 1961
DraI TTTAAA 3 cut(s) 670, 1857, 2239
EaeI YGGCCR 2 cut(s) 310, 591
Eam1104I CTCTTC 3 cut(s) 2313, 2667, 2700
EarI CTCTTC 3 cut(s) 2313, 2667, 2700
Eco130I CCWWGG 1 cut(s) 1702
Eco32I GATATC 1 cut(s) 112
Eco47I GGWCC 2 cut(s) 1796, 1828
Eco57I CTGAAG 6 cut(s) 1653, 2066, 2207, 2294, 2645, 2648
Eco81I CCTNAGG 1 cut(s) 1682
EcoNI CCTNNNNNAGG 1 cut(s) 50
EcoO109I RGGNCCY 1 cut(s) 1828
EcoRI GAATTC 1 cut(s) 2451
EcoRII CCWGG 4 cut(s) 296, 538, 593, 1015
EcoRV GATATC 1 cut(s) 112
EcoT14I CCWWGG 1 cut(s) 1702
ErhI CCWWGG 1 cut(s) 1702
FalI AAGNNNNNCTT 4 cut(s) 1523, 1555, 1561, 1593
FaqI GGGAC 3 cut(s) 857, 1841, 2178
FauI CCCGC 1 cut(s) 2675
FbaI TGATCA 2 cut(s) 1425, 2500
FblI GTMKAC 4 cut(s) 535, 1463, 1612, 2527
Fnu4HI GCNGC 9 cut(s) 452, 886, 1256, 1311, 1486, 1811, 1841, 2438, 2640
Fsp4HI GCNGC 9 cut(s) 452, 886, 1256, 1311, 1486, 1811, 1841, 2438, 2640
FspBI CTAG 4 cut(s) 372, 1391, 1775, 2078
GlaI GCGC 2 cut(s) 884, 2163
GluI GCNGC 9 cut(s) 452, 886, 1256, 1311, 1486, 1811, 1841, 2438, 2640
GsaI CCCAGC 1 cut(s) 2162
HaeIII GGCC 6 cut(s) 312, 424, 593, 833, 1410, 2284
HapII CCGG 2 cut(s) 21, 873
HgaI GACGC 1 cut(s) 136
HhaI GCGC 2 cut(s) 885, 2164
Hin6I GCGC 2 cut(s) 883, 2162
HinP1I GCGC 2 cut(s) 883, 2162
HincII GTYRAC 2 cut(s) 536, 2385
HindII GTYRAC 2 cut(s) 536, 2385
HindIII AAGCTT 2 cut(s) 773, 1547
HpaI GTTAAC 1 cut(s) 2385
HpaII CCGG 2 cut(s) 21, 873
HphI GGTGA 4 cut(s) 103, 820, 1650, 2054
Hpy166II GTNNAC 6 cut(s) 536, 1153, 1464, 1613, 2385, 2528
Hpy188III TCNNGA 9 cut(s) 145, 440, 929, 956, 1034, 1781, 1909, 2666, 2695
Hpy8I GTNNAC 6 cut(s) 536, 1153, 1464, 1613, 2385, 2528
Hpy99I CGWCG 2 cut(s) 161, 1208
HpyCH4III ACNGT 6 cut(s) 326, 608, 938, 1045, 1208, 1960
HpyCH4IV ACGT 5 cut(s) 57, 102, 245, 853, 1481
HpyF10VI GCNNNNNNNGC 2 cut(s) 224, 359
HpySE526I ACGT 5 cut(s) 57, 102, 245, 853, 1481
HspAI GCGC 2 cut(s) 883, 2162
Ksp22I TGATCA 2 cut(s) 1425, 2500
KspAI GTTAAC 1 cut(s) 2385
LguI GCTCTTC 1 cut(s) 2313
LmnI GCTCC 2 cut(s) 718, 2576
Lsp1109I GCAGC 8 cut(s) 463, 897, 1242, 1297, 1797, 1827, 2424, 2626
LweI GCATC 6 cut(s) 142, 214, 670, 1297, 1564, 2207
MabI ACCWGGT 1 cut(s) 538
MaeI CTAG 4 cut(s) 372, 1391, 1775, 2078
MaeII ACGT 5 cut(s) 57, 102, 245, 853, 1481
MaeIII GTNAC 7 cut(s) 854, 898, 993, 1208, 1686, 2206, 2243
MbiI CCGCTC 1 cut(s) 2460
MflI RGATCY 3 cut(s) 1777, 2113, 2413
MhlI GDGCHC 3 cut(s) 63, 2151, 2736
MlsI TGGCCA 1 cut(s) 593
MluI ACGCGT 1 cut(s) 1607
MluNI TGGCCA 1 cut(s) 593
MlyI GAGTC 4 cut(s) 1122, 1300, 1779, 2596
MmeI TCCRAC 4 cut(s) 394, 1227, 1701, 2749
Mox20I TGGCCA 1 cut(s) 593
MroXI GAANNNNTTC 2 cut(s) 247, 2355
MscI TGGCCA 1 cut(s) 593
MslI CAYNNNNRTG 3 cut(s) 468, 633, 2215
Msp20I TGGCCA 1 cut(s) 593
MspA1I CMGCKG 2 cut(s) 1810, 1840
MspI CCGG 2 cut(s) 21, 873
MspR9I CCNGG 4 cut(s) 298, 540, 595, 1017
Mva1269I GAATGC 1 cut(s) 2255
MvaI CCWGG 4 cut(s) 298, 540, 595, 1017
MvnI CGCG 1 cut(s) 1609
MwoI GCNNNNNNNGC 2 cut(s) 224, 359
NcoI CCATGG 1 cut(s) 1702
NlaIV GGNNCC 4 cut(s) 626, 1733, 1829, 2687
NmeAIII GCCGAG 4 cut(s) 288, 859, 1552, 2610
NmuCI GTSAC 5 cut(s) 854, 1208, 1686, 2206, 2243
NspI RCATGY 2 cut(s) 263, 2732
NspV TTCGAA 2 cut(s) 241, 489
PagI TCATGA 1 cut(s) 955
PciI ACATGT 2 cut(s) 259, 2728
PciSI GCTCTTC 1 cut(s) 2313
PctI GAATGC 1 cut(s) 2255
PdmI GAANNNNTTC 2 cut(s) 247, 2355
PfeI GAWTC 8 cut(s) 71, 270, 304, 1145, 1333, 1473, 1952, 2746
PflMI CCANNNNNTGG 1 cut(s) 1892
PkrI GCNGC 9 cut(s) 453, 887, 1257, 1312, 1487, 1812, 1842, 2439, 2641
PleI GAGTC 4 cut(s) 1122, 1299, 1778, 2595
PpsI GAGTC 4 cut(s) 1122, 1299, 1778, 2595
PpuMI RGGWCCY 1 cut(s) 1828
PscI ACATGT 2 cut(s) 259, 2728
Psp1406I AACGTT 2 cut(s) 102, 245
Psp5II RGGWCCY 1 cut(s) 1828
Psp6I CCWGG 4 cut(s) 296, 538, 593, 1015
PspFI CCCAGC 1 cut(s) 2158
PspGI CCWGG 4 cut(s) 296, 538, 593, 1015
PspN4I GGNNCC 4 cut(s) 626, 1733, 1829, 2687
PspPI GGNCC 3 cut(s) 422, 1796, 1828
PspPPI RGGWCCY 1 cut(s) 1828
PstI CTGCAG 2 cut(s) 1845, 2644
PsuI RGATCY 3 cut(s) 1777, 2113, 2413
PvuII CAGCTG 2 cut(s) 1810, 1840
RsaI GTAC 3 cut(s) 1119, 1152, 1962
RsaNI GTAC 3 cut(s) 1118, 1151, 1961
RseI CAYNNNNRTG 3 cut(s) 468, 633, 2215
SalI GTCGAC 1 cut(s) 534
SapI GCTCTTC 1 cut(s) 2313
SatI GCNGC 9 cut(s) 452, 886, 1256, 1311, 1486, 1811, 1841, 2438, 2640
Sau96I GGNCC 3 cut(s) 422, 1796, 1828
SchI GAGTC 4 cut(s) 1122, 1300, 1779, 2596
ScrFI CCNGG 4 cut(s) 298, 540, 595, 1017
SduI GDGCHC 3 cut(s) 63, 2151, 2736
SexAI ACCWGGT 1 cut(s) 538
SfaNI GCATC 6 cut(s) 142, 214, 670, 1297, 1564, 2207
SfcI CTRYAG 3 cut(s) 975, 1841, 2640
SfuI TTCGAA 2 cut(s) 241, 489
SinI GGWCC 2 cut(s) 1796, 1828
SmiMI CAYNNNNRTG 3 cut(s) 468, 633, 2215
SmlI CTYRAG 3 cut(s) 50, 1544, 2446
SmoI CTYRAG 3 cut(s) 50, 1544, 2446
SpeI ACTAGT 1 cut(s) 2077
SsiI CCGC 4 cut(s) 1486, 2065, 2460, 2682
SspI AATATT 5 cut(s) 458, 739, 919, 1673, 2427
SspMI CTAG 4 cut(s) 372, 1391, 1775, 2078
StyD4I CCNGG 4 cut(s) 296, 538, 593, 1015
StyI CCWWGG 1 cut(s) 1702
TaaI ACNGT 6 cut(s) 326, 608, 938, 1045, 1208, 1960
TaiI ACGT 5 cut(s) 60, 105, 248, 856, 1484
TaqI TCGA 6 cut(s) 241, 319, 489, 535, 616, 2596
TatI WGTACW 3 cut(s) 1117, 1150, 1960
TauI GCSGC 1 cut(s) 1488
TfiI GAWTC 8 cut(s) 71, 270, 304, 1145, 1333, 1473, 1952, 2746
TscAI CASTG 1 cut(s) 943
TseFI GTSAC 5 cut(s) 854, 1208, 1686, 2206, 2243
TseI GCWGC 8 cut(s) 451, 885, 1255, 1310, 1810, 1840, 2437, 2639
Tsp45I GTSAC 5 cut(s) 854, 1208, 1686, 2206, 2243
TspDTI ATGAA 7 cut(s) 480, 519, 972, 1184, 1188, 2309, 2464
TspGWI ACGGA 2 cut(s) 999, 2728
TspRI CASTG 1 cut(s) 943
Van91I CCANNNNNTGG 1 cut(s) 1892
VpaK11BI GGWCC 2 cut(s) 1796, 1828
XagI CCTNNNNNAGG 1 cut(s) 50
XapI RAATTY 9 cut(s) 964, 1063, 1761, 1921, 1940, 1965, 1993, 2083, 2451
XceI RCATGY 2 cut(s) 263, 2732
XcmI CCANNNNNNNNNTGG 2 cut(s) 681, 1977
XmiI GTMKAC 4 cut(s) 535, 1463, 1612, 2527
XmnI GAANNNNTTC 2 cut(s) 247, 2355
XspI CTAG 4 cut(s) 372, 1391, 1775, 2078
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.