Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0000069

Physical Location & Seq

Genomic Coordinates Forward (+)

39754187 .. 39761099

Gene Structure 6913 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG180100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3000 bp

ATGGCTGAAGGTGTTGTTATTGTTGCTGCTGGAGGGATCAAGACCCTCGGAGACTTCATCATTCAGCAAGCGAAGTTCTTGAGTGGAGTCAGCTATCAAGTTGAGCTTGCAAAAGTTGAACTACACTTGATCCGCGGCTTCCTCAGAGATGCAGATGCAAGACAAGGAGAAGAAGAGGTAGTCCGCGTTTGGGTTAAACTGATTAGAGATGCTGCTTATGACTTGGAGGATGTCATTGAATCTTTTGCCTTGAAAGTGGCTTCCAGGAGGAGAGGAGGTACTGTGAAGATTGCTCTCAAAAGGTTTGCCAGCATCTTTAATGAAGGAGTTAACCGATACAAGATTGGGTCCGAAATTGAGGATATTATGACCAAACTTTCTCATTTGAGGTCGAGTTTGCAAAGTTATAACATCAGGCAAATAAGTGGGGGTGATGGTGTCGGCCGTGTCGCTTCTTCTTTTAAGAGGCAACTAGACCGACGGCTAACTTATGCTCATGAAGTTGAAAGTCATACTGTTGGCTTAGAGGAAAACACAGATATACTAGTGAAGGAGTTGGTGAGAGAAGGAAAGCGTCACCGTGTTGTTTCTATTTGGGGGATGGGCGGCTCTGGAAAAACCACTCTTGCAAAACAGGTTTTCCTTCAAAATGAAGTTAAGCGTCATTTTGATTGTTTTGCTTGGGTCTGTATATCTCAACAATGGGAAGGAAAGGATGTATTGGAAGATATTATAATTAAACTCACTTCCCCAACAGCAGATAAAAGGAGAGAAATTTCCAAAATGAAAAAGGATGAAATAGCAAGGGAGGTCTTTAGGATCCAACGAGAAAAGAGATGTCTGGTGGTCCTTGATGACATATGGACTCAAGAGGCTTGGCATTCGATAAAAGCTGGATTCCCAATCAATGAGGAAACAGAGAGCCGGATATTACTCACTACTCGCAAGAAAGAAGTTGCCTTGCTTGCTTCCAAAAATGATCATCTCCACCAACCTCGACCACTAGATGACAACCAGAGCTGGGAACTGTTTGAAAAGATAGCGATGTGTCGAAGCGACAAAACAGACTTGGAAATTTATGCAAAGAAGAGAGAATTAGGAAAGAAGATGCTTGTACATTGTTCAGGTTTACCATTAGCCATCAATGTGCTCGCTGGTCTTCTTAGTAGACGAGAGACGATTGATGAGTGGGATGCAGTACTTCTTAATGTTGATGTATACATAATGAGAGGCATAAATGTCCTTGAAAAAGACAAGACAGGTCAGGAGTGTGGTGTTTCAGGTGTCTTGGCATTGAGTTATGATGACTTACCATCTCACTTAAAACTATGCTTTTTGTATTTAGCCCAATTTCCTGAGGATCATGAGATACGGGTAAAAAGACTTGCTCAATTATGGATTGCAGAAGGATTTATAACTTCAACGTCAGAAATGCATGTTTCAGGGGAAATTTTGGAAGAATTGTCATATAGTTGCCTAGTTGAATTGGTGGAAAGATCTATGGTTCAAGTTGTAGAATATGGTTTAAGTGGGAAGGTGAAAACTTGCGGTCTCCATGATTTTATGCGAGACTTGTGCTTGCAAAAGGCAGAAGAGGAGAATTTTCTCCGAATTATTAACTGTTCTACGGGACTGGTATCTAAGACACCACTAATTGGCAAGGTTCGAAGACTTGCCCTCCATTTGGACGAAAATGTTAAATATGATTTCAGTATAGATGGAAGAGATGAGCACATTAGGTCTCTATTATACTTTACCCCAAAAGGGTTTGACCAAAAGTGGAACAAAAAAGTAATGCGATCAGTATTCAATGACTTCAAATTGCTTAGAGTTCTGAAGTTTGAAAAAATAGAGAGAGAATTTCAGTTACCGAAAACGATTGGGAATCTAGTCCACTTGAGGTTTCTGAGTCTGAAGCATAGTGCATATAGTGGGTTGCCATCATCTGTTTCTAATCTGGTACTTTTGCAAACTCTAGATCTGCGGTATAATTATTATTTATATGAAGGATCTTGTTTTGGTCGGGAGAGGGCAACCAGAATCAGAAATGTGTTTTGGAATATGGAGCAACTGAGGCATTTATATTTACCTTGGCGTCACTATATAAGTGAACAGAAACTCTCATTTGCAAGGCTGTGCAATTTGCAGACGTTGGGTGATCTTCCAATTGAGAAATGTGAGTTAAATGATCTTGTTCAGTTAAGCAATCTGAAGAAAATATCCATAATCGTATCACAACCTAGTCATTTGGAAAAGTTCAAGAACATGTTGATATCAAGAAGTATAACATATGAGCATCTTCGATCGCTATCTTTGAAGCTAAACCGAGATGATAATGAAGATATAGCAAGAGATATAGTGTTAAGGTGTCCTTATTTATACAAACTACGACTGCTTGGGAAAATGACGGAGTTTCCAGAAGAGCTCCTGGGCTATCCAAAACTCACCAAGATAACGCTGGTTAGTACAGAACTGAGATGTGACCAGATAGATATAGTGAAGATGCTGCCCAAGTTAAGGGTGCTTTACCTGGGTCGTGATGCTTTCAAATCAAAAACAATGGTTTTCTCCCCAGGAGGCTTTCCTCATCTGGAATTTCTTACACTAAGTGCTTTGTTTATGTTGAACGAGTGGAGGGTGGAGAAAGAAGCCATGCCTAGTCTTCAGAGATTGCATATTGAATGGTGCTTTCAATTGTGGGAAGTACCAGATGGGCTTCAGCATATTACTACCCTCAAGGAATTAACAATCAATGTGATGACCAGTAGATTCTGCAGTAGGGTTGGGGAAGAAGGAGAGGATTTCTACAAAATTAAACATGTGCCTTCTATTATAATCACAAATATTCAACCCGACTACAAGAAAGACAAGGAGCCAGAAATGGAGGAAGCAGCAGGTGCGTCTCGAGTAGTTGCTAATGACTATGAGGAATCAACTGTGGATGCTCCTCTGCCTCCTGAAGAAAAAACAGAGGAAATACAAGCTGCATCCGCTCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001101 GO:0002230 GO:0002238 GO:0002239 GO:0002252 GO:0002376 GO:0002682 GO:0002697 GO:0002831 GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008219 GO:0009314 GO:0009416 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009615 GO:0009620 GO:0009626 GO:0009628 GO:0009637 GO:0009642 GO:0009646 GO:0009719 GO:0009725 GO:0009751 GO:0009987 GO:0010033 GO:0012501 GO:0014070 GO:0016020 GO:0023052 GO:0030054 GO:0031347 GO:0032101 GO:0032870 GO:0033554 GO:0034050 GO:0035690 GO:0036094 GO:0042221 GO:0042493 GO:0043207 GO:0043900 GO:0044464 GO:0045087 GO:0046677 GO:0048583 GO:0050688 GO:0050691 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051607 GO:0051704 GO:0051707 GO:0051716 GO:0055044 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071407 GO:0071446 GO:0071495 GO:0071944 GO:0080134 GO:0097159 GO:0098542 GO:1901265 GO:1901363 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NB-ARC

Protein Analysis

999

Amino Acids

115.02

Weight (kDa)

7.77

Isoelectric Point (pI)

48.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rx_N	PF18052	13 - 91	1.1e-19	Rx N-terminal domain
NB-ARC	PF00931	177 - 352	1.1e-42	NB-ARC domain
WHD_DRP	PF23559	451 - 526	1.1e-16	Disease resistance protein Winged helix domain
LRR_14	PF23598	596 - 927	5.6e-33	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000069)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10920 AT1G10920 AT1G10920 AT1G10920 AT1G10920 AT1G50180 AT1G53350 AT1G58390 AT1G58390 AT1G58400 AT1G58400 AT1G58400 AT1G58410 AT1G58410 AT1G58410 AT1G58410 AT1G58602 AT1G58602 AT1G58807 AT1G58807 AT1G58848 AT1G58848 AT1G59124 AT1G59124 AT1G59218 AT1G59218 AT1G59218 AT1G59620 AT1G59780 AT1G59780 AT5G35450 AT5G35450 AT5G43470 AT5G43470 AT5G43470 AT5G43470 AT5G48620 AT5G48620 AT5G48620 AT5G48620 AT5G48620 AT5G48620
fragaria_vesca	FvH4_4g04072 FvH4_4g22931 FvH4_4g22931 FvH4_4g22940 FvH4_6g49940 FvH4_6g49940 FvH4_7g08100 FvH4_7g08870 FvH4_7g08870 FvH4_7g09280 FvH4_7g09290 FvH4_7g15190 FvH4_7g15200 FvH4_7g15240 FvH4_7g15240 FvH4_7g33440
malus_domestica	MD00G1174600.v1.1 MD01G1113700.v1.1 MD03G1071300.v1.1 MD04G1041500.v1.1 MD04G1238000.v1.1 MD07G1029000.v1.1 MD07G1092100.v1.1 MD07G1092300.v1.1 MD07G1092600.v1.1 MD12G1256300.v1.1 MD13G1128200.v1.1 MD13G1128400.v1.1 MD17G1268000.v1.1
prunus_persica	Prupe.1G041300_v2.0.a1 Prupe.1G041300_v2.0.a1 Prupe.1G042900_v2.0.a1 Prupe.1G043100_v2.0.a1 Prupe.1G043100_v2.0.a1 Prupe.1G043100_v2.0.a1 Prupe.1G043100_v2.0.a1 Prupe.1G043600_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G046700_v2.0.a1 Prupe.1G047700_v2.0.a1 Prupe.1G047900_v2.0.a1 Prupe.1G048000_v2.0.a1 Prupe.1G048500_v2.0.a1 Prupe.1G048500_v2.0.a1 Prupe.1G049900_v2.0.a1 Prupe.1G051500_v2.0.a1 Prupe.1G051800_v2.0.a1 Prupe.1G051900_v2.0.a1 Prupe.1G052200_v2.0.a1 Prupe.1G194900_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217900_v2.0.a1 Prupe.1G217900_v2.0.a1 Prupe.1G217900_v2.0.a1 Prupe.1G217900_v2.0.a1 Prupe.1G217900_v2.0.a1 Prupe.2G117200_v2.0.a1 Prupe.2G117200_v2.0.a1 Prupe.2G117200_v2.0.a1 Prupe.2G117200_v2.0.a1 Prupe.2G117300_v2.0.a1 Prupe.2G117400_v2.0.a1 Prupe.2G117500_v2.0.a1 Prupe.2G117700_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G119900_v2.0.a1
pyrus_communis	pycom03g05750 pycom04g21110 pycom07g07530 pycom07g07590 pycom13g11110 pycom13g11140 pycom13g11160 pycom13g11170 pycom17g26680
rosa_chinensis	RchiOBHm_Chr1g0341231 RchiOBHm_Chr1g0344091 RchiOBHm_Chr1g0344161 RchiOBHm_Chr1g0345001 RchiOBHm_Chr1g0345351 RchiOBHm_Chr1g0345371 RchiOBHm_Chr1g0345391 RchiOBHm_Chr1g0345531 RchiOBHm_Chr1g0345551 RchiOBHm_Chr1g0345571 RchiOBHm_Chr1g0345581 RchiOBHm_Chr1g0345661 RchiOBHm_Chr1g0345691 RchiOBHm_Chr1g0345761 RchiOBHm_Chr1g0345791 RchiOBHm_Chr1g0345821 RchiOBHm_Chr1g0345911 RchiOBHm_Chr1g0345941 RchiOBHm_Chr1g0357611 RchiOBHm_Chr1g0357911 RchiOBHm_Chr1g0357921 RchiOBHm_Chr1g0357931 RchiOBHm_Chr1g0357971 RchiOBHm_Chr1g0358121 RchiOBHm_Chr1g0383491 RchiOBHm_Chr1g0383511 RchiOBHm_Chr1g0383521 RchiOBHm_Chr3g0480581 RchiOBHm_Chr4g0394341 RchiOBHm_Chr4g0394361 RchiOBHm_Chr4g0394411 RchiOBHm_Chr4g0394441 RchiOBHm_Chr4g0407681 RchiOBHm_Chr4g0429191 RchiOBHm_Chr4g0429201 RchiOBHm_Chr4g0429211 RchiOBHm_Chr4g0429221 RchiOBHm_Chr6g0265091
rosa_laevigata	RLG00000007088 RLG00000008700 RLG00000009190 RLG00000009702 RLG00000014210 RLG00000028829 RLG00000028833 RLG00000028837 RLG00000028838 RLG00000028921 RLG00000028926
rosa_multiflora	Rmu_co8366955.1_g000001 Rmu_co8394205.1_g000001 Rmu_sc0000019.1_g000001 Rmu_sc0000054.1_g000031 Rmu_sc0000054.1_g000033 Rmu_sc0000200.1_g000002 Rmu_sc0000200.1_g000007 Rmu_sc0000200.1_g000018 Rmu_sc0000200.1_g000020 Rmu_sc0000200.1_g000021 Rmu_sc0000251.1_g000012 Rmu_sc0000251.1_g000015 Rmu_sc0000251.1_g000028 Rmu_sc0000253.1_g000015 Rmu_sc0000255.1_g000045 Rmu_sc0000255.1_g000046 Rmu_sc0001292.1_g000013 Rmu_sc0001292.1_g000018 Rmu_sc0001292.1_g000028 Rmu_sc0001292.1_g000029 Rmu_sc0001349.1_g000006 Rmu_sc0001349.1_g000014 Rmu_sc0001582.1_g000006 Rmu_sc0001582.1_g000018 Rmu_sc0001582.1_g000020 Rmu_sc0001692.1_g000007 Rmu_sc0001692.1_g000024 Rmu_sc0001692.1_g000026 Rmu_sc0001692.1_g000029 Rmu_sc0001692.1_g000030 Rmu_sc0001835.1_g000006 Rmu_sc0001835.1_g000010 Rmu_sc0002071.1_g000005 Rmu_sc0002276.1_g000002 Rmu_sc0002276.1_g000009 Rmu_sc0002329.1_g000018 Rmu_sc0002329.1_g000023 Rmu_sc0002329.1_g000025 Rmu_sc0002523.1_g000005 Rmu_sc0003573.1_g000005 Rmu_sc0003573.1_g000006 Rmu_sc0004099.1_g000021 Rmu_sc0005812.1_g000009 Rmu_sc0006271.1_g000002 Rmu_sc0006287.1_g000038 Rmu_sc0006439.1_g000008 Rmu_sc0007456.1_g000004 Rmu_sc0007581.1_g000009 Rmu_sc0007849.1_g000014 Rmu_sc0008115.1_g000012 Rmu_sc0010521.1_g000004 Rmu_sc0012471.1_g000017 Rmu_sc0014762.1_g000001 Rmu_sc0015150.1_g000003 Rmu_sc0017221.1_g000001 Rmu_sc0017299.1_g000001 Rmu_sc0017299.1_g000002 Rmu_sc0021457.1_g000001 Rmu_sc0022067.1_g000001 Rmu_sc0033275.1_g000001 Rmu_ssc0000245.1_g000012 Rmu_ssc0000359.1_g000035 Rmu_ssc0000359.1_g000067 Rmu_ssc0000359.1_g000072 Rmu_ssc0000434.1_g000005 Rmu_ssc0000434.1_g000007
rosa_roxburghii	Rroxscaffold_4G00298420 Rroxscaffold_4G00298720 Rroxscaffold_4G00308990 Rroxscaffold_4G00309000 Rroxscaffold_4G00309010 Rroxscaffold_4G00309050 Rroxscaffold_4G00309070 Rroxscaffold_4G00309100 Rroxscaffold_4G00310030 Rroxscaffold_4G00310050 Rroxscaffold_4G00311880 Rroxscaffold_5G00339420 Rroxscaffold_5G00339450 Rroxscaffold_5G00344880 Rroxscaffold_5G00352270 Rroxscaffold_5G00362240 Rroxscaffold_5G00370840 Rroxscaffold_7G00202970
rosa_rugosa	Rorug01G0159100.1 Rorug01G0159200.1 Rorug01G0171700 Rorug01G0171900 Rorug01G0172000 Rorug01G0191700 Rorug01G0191800 Rorug01G0256900 Rorug01G0257000 Rorug01G0257100 Rorug03G0198000 Rorug03G0366300.1 Rorug03G0366400.1 Rorug03G0366500.1 Rorug04G0081200 Rorug04G0081200 Rorug04G0081200 Rorug04G0233700 Rorug04G0233800 Rorug04G0233800 Rorug06G0013300
rosa_samantha	Rh1CG138800 Rh1CG161300 Rh1CG173800 Rh1CG179800 Rh1CG180100 Rh1CG180500 Rh1CG180800 Rh1CG180900 Rh1CG194100 Rh1DG205100 Rh3AG236300 Rh4AG052000 Rh4AG052100 Rh4AG145900 Rh4AG289700 Rh4AG289800 Rh6AG136800 Rh6AG137300 Rh6BG133600 Rh6CG132000 Rh6CG134000 Rh6DG119300
rosa_wichuraiana	Rw0G003420 Rw1G015500 Rw1G016110 Rw1G016180 Rw1G016210 Rw1G016230 Rw1G016280 Rw1G016440 Rw1G016450 Rw1G016460 Rw1G016480 Rw1G017490 Rw1G024140 Rw1G024160 Rw3G022530 Rw4G004140 Rw4G004190 Rw4G011850 Rw6G011800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	4 cut(s)	408, 734, 1415, 2834
AarI	CACCTGC	1 cut(s)	2885
Acc36I	ACCTGC	1 cut(s)	2885
AccB7I	CCANNNNNTGG	1 cut(s)	1655
AccBSI	CCGCTC	1 cut(s)	2993
AccI	GTMKAC	2 cut(s)	1168, 1218
AccII	CGCG	2 cut(s)	135, 186
AciI	CCGC	7 cut(s)	133, 135, 184, 606, 1548, 1984, 2991
AclWI	GGATC	6 cut(s)	44, 124, 814, 827, 1368, 2017
AcoI	YGGCCR	1 cut(s)	442
AcsI	RAATTY	6 cut(s)	774, 1074, 1449, 1600, 1859, 2594
AcuI	CTGAAG	7 cut(s)	27, 1856, 1934, 2231, 2648, 2702, 2979
AcyI	GRCGYC	1 cut(s)	2095
AdeI	CACNNNGTG	1 cut(s)	2609
AfaI	GTAC	6 cut(s)	280, 1116, 1200, 1962, 2467, 2706
AfiI	CCNNNNNNNGG	6 cut(s)	190, 1021, 1655, 1684, 1764, 2517
AflIII	ACRYGT	2 cut(s)	2265, 2818
AhlI	ACTAGT	1 cut(s)	544
AjnI	CCWGG	4 cut(s)	263, 2427, 2529, 2572
AjuI	GAANNNNNNNTTGG	2 cut(s)	2038, 2070
AluBI	AGCT	7 cut(s)	93, 106, 893, 1020, 2320, 2425, 2984
AluI	AGCT	7 cut(s)	93, 106, 893, 1020, 2320, 2425, 2984
Alw21I	GWGCWC	3 cut(s)	1152, 1734, 2427
Alw26I	GTCTC	6 cut(s)	45, 1169, 1556, 1563, 1746, 2907
AlwI	GGATC	6 cut(s)	44, 124, 814, 827, 1368, 2017
Ama87I	CYCGRG	1 cut(s)	2904
AoxI	GGCC	1 cut(s)	442
ApeKI	GCWGC	5 cut(s)	26, 212, 2506, 2891, 2984
ApoI	RAATTY	6 cut(s)	774, 1074, 1449, 1600, 1859, 2594
AspS9I	GGNCC	2 cut(s)	348, 847
AsuHPI	GGTGA	6 cut(s)	443, 569, 571, 1549, 2168, 2437
AsuII	TTCGAA	1 cut(s)	1666
AvaI	CYCGRG	1 cut(s)	2904
AvaII	GGWCC	2 cut(s)	348, 847
AxyI	CCTNAGG	1 cut(s)	1356
BamHI	GGATCC	1 cut(s)	819
BanII	GRGCYC	1 cut(s)	2427
BbsI	GAAGAC	3 cut(s)	1151, 1675, 2654
Bbv12I	GWGCWC	3 cut(s)	1152, 1734, 2427
BbvI	GCAGC	5 cut(s)	13, 199, 2493, 2903, 2971
BccI	CCATC	7 cut(s)	428, 595, 1148, 1321, 1712, 1948, 2705
BceAI	ACGGC	2 cut(s)	429, 497
BcgI	CGANNNNNNTGC	2 cut(s)	1557, 1591
BciT130I	CCWGG	4 cut(s)	265, 2429, 2531, 2574
BclI	TGATCA	1 cut(s)	979
BcoDI	GTCTC	6 cut(s)	45, 1169, 1556, 1563, 1746, 2907
BcuI	ACTAGT	1 cut(s)	544
BfaI	CTAG	8 cut(s)	473, 545, 1004, 1478, 1889, 1976, 2241, 2658
BfmI	CTRYAG	1 cut(s)	2773
BfuAI	ACCTGC	1 cut(s)	2885
BglII	AGATCT	2 cut(s)	1496, 1978
BisI	GCNGC	7 cut(s)	27, 136, 213, 607, 2507, 2892, 2985
BlsI	GCNGC	7 cut(s)	28, 137, 214, 608, 2508, 2893, 2986
BmcAI	AGTACT	1 cut(s)	1200
Bme1390I	CCNGG	4 cut(s)	265, 2429, 2531, 2574
Bme18I	GGWCC	2 cut(s)	348, 847
BmeT110I	CYCGRG	1 cut(s)	2904
BmgT120I	GGNCC	2 cut(s)	348, 847
BmiI	GGNNCC	3 cut(s)	349, 821, 2874
BmrFI	CCNGG	4 cut(s)	265, 2429, 2531, 2574
BpiI	GAAGAC	3 cut(s)	1151, 1675, 2654
BpmI	CTGGAG	1 cut(s)	51
Bpu14I	TTCGAA	1 cut(s)	1666
BpuEI	CTTGAG	4 cut(s)	100, 852, 1918, 2720
BsaBI	GATNNNNATC	1 cut(s)	2308
BsaHI	GRCGYC	1 cut(s)	2095
BsaI	GGTCTC	2 cut(s)	1556, 1746
BsaJI	CCNNGG	6 cut(s)	46, 133, 2090, 2428, 2530, 2572
BsaXI	ACNNNNNCTCC	6 cut(s)	262, 267, 292, 297, 1662, 1692
Bsc4I	CCNNNNNNNGG	6 cut(s)	190, 1021, 1655, 1684, 1764, 2517
Bse1I	ACTGG	2 cut(s)	1638, 2763
Bse21I	CCTNAGG	1 cut(s)	1356
Bse8I	GATNNNNATC	1 cut(s)	2308
BseBI	CCWGG	4 cut(s)	265, 2429, 2531, 2574
BseDI	CCNNGG	6 cut(s)	46, 133, 2090, 2428, 2530, 2572
BseGI	GGATG	7 cut(s)	235, 606, 721, 799, 1198, 2947, 2987
BseJI	GATNNNNATC	1 cut(s)	2308
BseLI	CCNNNNNNNGG	6 cut(s)	190, 1021, 1655, 1684, 1764, 2517
BseMII	CTCAG	5 cut(s)	157, 1347, 1898, 2063, 2465
BseNI	ACTGG	2 cut(s)	1638, 2763
BseRI	GAGGAG	4 cut(s)	283, 288, 1610, 2937
BseX3I	CGGCCG	1 cut(s)	442
BseXI	GCAGC	5 cut(s)	13, 199, 2493, 2903, 2971
BseYI	CCCAGC	1 cut(s)	1020
Bsh1236I	CGCG	2 cut(s)	135, 186
Bsh1285I	CGRYCG	2 cut(s)	445, 2306
BshFI	GGCC	1 cut(s)	444
BsiEI	CGRYCG	2 cut(s)	445, 2306
BsiHKAI	GWGCWC	3 cut(s)	1152, 1734, 2427
BsiHKCI	CYCGRG	1 cut(s)	2904
BsiSI	CCGG	1 cut(s)	925
BslFI	GGGAC	1 cut(s)	1644
BslI	CCNNNNNNNGG	6 cut(s)	190, 1021, 1655, 1684, 1764, 2517
BsmAI	GTCTC	6 cut(s)	45, 1169, 1556, 1563, 1746, 2907
BsmBI	CGTCTC	2 cut(s)	1169, 2907
BsmFI	GGGAC	1 cut(s)	1644
BsmI	GAATGC	1 cut(s)	880
BsnI	GGCC	1 cut(s)	444
Bso31I	GGTCTC	2 cut(s)	1556, 1746
BsoBI	CYCGRG	1 cut(s)	2904
Bsp119I	TTCGAA	1 cut(s)	1666
Bsp1286I	GDGCHC	3 cut(s)	1152, 1734, 2427
Bsp1407I	TGTACA	1 cut(s)	1114
BspACI	CCGC	7 cut(s)	133, 135, 184, 606, 1548, 1984, 2991
BspANI	GGCC	1 cut(s)	444
BspCNI	CTCAG	5 cut(s)	156, 1348, 1899, 2064, 2466
BspFNI	CGCG	2 cut(s)	135, 186
BspHI	TCATGA	2 cut(s)	496, 1363
BspLI	GGNNCC	3 cut(s)	349, 821, 2874
BspMAI	CTGCAG	1 cut(s)	2777
BspMI	ACCTGC	1 cut(s)	2885
BspPI	GGATC	6 cut(s)	44, 124, 814, 827, 1368, 2017
BspQI	GCTCTTC	1 cut(s)	2415
BspT104I	TTCGAA	1 cut(s)	1666
BspTNI	GGTCTC	2 cut(s)	1556, 1746
BsrBI	CCGCTC	1 cut(s)	2993
BsrGI	TGTACA	1 cut(s)	1114
BsrI	ACTGG	2 cut(s)	1638, 2763
BssECI	CCNNGG	6 cut(s)	46, 133, 2090, 2428, 2530, 2572
BssNAI	GTATAC	1 cut(s)	1219
BssNI	GRCGYC	1 cut(s)	2095
BssT1I	CCWWGG	1 cut(s)	2090
Bst1107I	GTATAC	1 cut(s)	1219
Bst2UI	CCWGG	4 cut(s)	265, 2429, 2531, 2574
Bst4CI	ACNGT	6 cut(s)	283, 517, 581, 1029, 1622, 2938
Bst6I	CTCTTC	5 cut(s)	168, 1082, 1587, 1717, 2415
BstACI	GRCGYC	1 cut(s)	2095
BstAPI	GCANNNNNTGC	1 cut(s)	2897
BstAUI	TGTACA	1 cut(s)	1114
BstBI	TTCGAA	1 cut(s)	1666
BstC8I	GCNNGC	6 cut(s)	69, 108, 310, 966, 1152, 1580
BstDSI	CCRYGG	1 cut(s)	133
BstF5I	GGATG	7 cut(s)	235, 606, 721, 799, 1198, 2947, 2987
BstFNI	CGCG	2 cut(s)	135, 186
BstMAI	GTCTC	6 cut(s)	45, 1169, 1556, 1563, 1746, 2907
BstMCI	CGRYCG	2 cut(s)	445, 2306
BstMWI	GCNNNNNNNGC	4 cut(s)	965, 2074, 2897, 2990
BstNI	CCWGG	4 cut(s)	265, 2429, 2531, 2574
BstNSI	RCATGY	3 cut(s)	1439, 2269, 2822
BstSCI	CCNGG	4 cut(s)	263, 2427, 2529, 2572
BstSFI	CTRYAG	1 cut(s)	2773
BstUI	CGCG	2 cut(s)	135, 186
BstV1I	GCAGC	5 cut(s)	13, 199, 2493, 2903, 2971
BstV2I	GAAGAC	3 cut(s)	1151, 1675, 2654
BstX2I	RGATCY	4 cut(s)	819, 1496, 1978, 2009
BstYI	RGATCY	4 cut(s)	819, 1496, 1978, 2009
BstZ17I	GTATAC	1 cut(s)	1219
BstZI	CGGCCG	1 cut(s)	442
Bsu36I	CCTNAGG	1 cut(s)	1356
BsuRI	GGCC	1 cut(s)	444
BtgI	CCRYGG	1 cut(s)	133
BtgZI	GCGATG	1 cut(s)	1058
BtsCI	GGATG	7 cut(s)	235, 606, 721, 799, 1198, 2947, 2987
BveI	ACCTGC	1 cut(s)	2885
Cac8I	GCNNGC	6 cut(s)	69, 108, 310, 966, 1152, 1580
CciI	TCATGA	2 cut(s)	496, 1363
Cfr13I	GGNCC	2 cut(s)	348, 847
Cfr42I	CCGCGG	1 cut(s)	136
CseI	GACGC	4 cut(s)	563, 650, 2084, 2889
Csp6I	GTAC	6 cut(s)	279, 1115, 1199, 1961, 2466, 2705
CviAII	CATG	7 cut(s)	497, 1364, 1436, 1556, 2266, 2653, 2819
CviQI	GTAC	6 cut(s)	279, 1115, 1199, 1961, 2466, 2705
DraIII	CACNNNGTG	1 cut(s)	2609
EaeI	YGGCCR	1 cut(s)	442
EagI	CGGCCG	1 cut(s)	442
Eam1104I	CTCTTC	5 cut(s)	168, 1082, 1587, 1717, 2415
EarI	CTCTTC	5 cut(s)	168, 1082, 1587, 1717, 2415
Ecl136II	GAGCTC	1 cut(s)	2425
EclXI	CGGCCG	1 cut(s)	442
Eco130I	CCWWGG	1 cut(s)	2090
Eco24I	GRGCYC	1 cut(s)	2427
Eco31I	GGTCTC	2 cut(s)	1556, 1746
Eco32I	GATATC	1 cut(s)	2274
Eco47I	GGWCC	2 cut(s)	348, 847
Eco52I	CGGCCG	1 cut(s)	442
Eco53kI	GAGCTC	1 cut(s)	2425
Eco57I	CTGAAG	7 cut(s)	27, 1856, 1934, 2231, 2648, 2702, 2979
Eco81I	CCTNAGG	1 cut(s)	1356
Eco88I	CYCGRG	1 cut(s)	2904
EcoICRI	GAGCTC	1 cut(s)	2425
EcoRII	CCWGG	4 cut(s)	263, 2427, 2529, 2572
EcoRV	GATATC	1 cut(s)	2274
EcoT14I	CCWWGG	1 cut(s)	2090
EcoT22I	ATGCAT	1 cut(s)	1437
EcoT38I	GRGCYC	1 cut(s)	2427
ErhI	CCWWGG	1 cut(s)	2090
Esp3I	CGTCTC	2 cut(s)	1169, 2907
FaeI	CATG	7 cut(s)	500, 1367, 1439, 1559, 2269, 2656, 2822
FalI	AAGNNNNNCTT	4 cut(s)	90, 122, 2356, 2388
FaqI	GGGAC	1 cut(s)	1644
FatI	CATG	7 cut(s)	496, 1363, 1435, 1555, 2265, 2652, 2818
FauNDI	CATATG	2 cut(s)	860, 2290
FbaI	TGATCA	1 cut(s)	979
FblI	GTMKAC	2 cut(s)	1168, 1218
Fnu4HI	GCNGC	7 cut(s)	27, 136, 213, 607, 2507, 2892, 2985
FokI	GGATG	7 cut(s)	242, 613, 728, 806, 1205, 2954, 2974
FriOI	GRGCYC	1 cut(s)	2427
Fsp4HI	GCNGC	7 cut(s)	27, 136, 213, 607, 2507, 2892, 2985
FspBI	CTAG	8 cut(s)	473, 545, 1004, 1478, 1889, 1976, 2241, 2658
GluI	GCNGC	7 cut(s)	27, 136, 213, 607, 2507, 2892, 2985
GsaI	CCCAGC	1 cut(s)	1024
GsuI	CTGGAG	1 cut(s)	51
HaeIII	GGCC	1 cut(s)	444
HapII	CCGG	1 cut(s)	925
HgaI	GACGC	4 cut(s)	563, 650, 2084, 2889
Hin1I	GRCGYC	1 cut(s)	2095
Hin1II	CATG	7 cut(s)	500, 1367, 1439, 1559, 2269, 2656, 2822
HincII	GTYRAC	1 cut(s)	331
HindII	GTYRAC	1 cut(s)	331
HinfI	GANTC	9 cut(s)	87, 239, 865, 897, 1885, 1909, 2040, 2769, 2930
HpaI	GTTAAC	1 cut(s)	331
HpaII	CCGG	1 cut(s)	925
HphI	GGTGA	6 cut(s)	443, 569, 571, 1549, 2168, 2437
Hpy166II	GTNNAC	6 cut(s)	331, 1130, 1169, 1219, 1894, 2111
Hpy8I	GTNNAC	6 cut(s)	331, 1130, 1169, 1219, 1894, 2111
Hpy99I	CGWCG	1 cut(s)	483
HpyCH4III	ACNGT	6 cut(s)	283, 517, 581, 1029, 1622, 2938
HpyCH4IV	ACGT	2 cut(s)	1424, 2150
HpyF10VI	GCNNNNNNNGC	4 cut(s)	965, 2074, 2897, 2990
HpySE526I	ACGT	2 cut(s)	1424, 2150
Hsp92I	GRCGYC	1 cut(s)	2095
Hsp92II	CATG	7 cut(s)	500, 1367, 1439, 1559, 2269, 2656, 2822
Ksp22I	TGATCA	1 cut(s)	979
KspAI	GTTAAC	1 cut(s)	331
KspI	CCGCGG	1 cut(s)	136
LguI	GCTCTTC	1 cut(s)	2415
LmnI	GCTCC	5 cut(s)	2065, 2430, 2872, 2950, 2998
Lsp1109I	GCAGC	5 cut(s)	13, 199, 2493, 2903, 2971
MaeI	CTAG	8 cut(s)	473, 545, 1004, 1478, 1889, 1976, 2241, 2658
MaeII	ACGT	2 cut(s)	1424, 2150
MaeIII	GTNAC	4 cut(s)	575, 1866, 2096, 2480
MbiI	CCGCTC	1 cut(s)	2993
MfeI	CAATTG	2 cut(s)	2166, 2693
MflI	RGATCY	4 cut(s)	819, 1496, 1978, 2009
MhlI	GDGCHC	3 cut(s)	1152, 1734, 2427
MlyI	GAGTC	3 cut(s)	96, 859, 1918
MmeI	TCCRAC	1 cut(s)	847
Mph1103I	ATGCAT	1 cut(s)	1437
MslI	CAYNNNNRTG	1 cut(s)	1145
MspA1I	CMGCKG	1 cut(s)	135
MspI	CCGG	1 cut(s)	925
MspR9I	CCNGG	4 cut(s)	265, 2429, 2531, 2574
MunI	CAATTG	2 cut(s)	2166, 2693
Mva1269I	GAATGC	1 cut(s)	880
MvaI	CCWGG	4 cut(s)	265, 2429, 2531, 2574
MvnI	CGCG	2 cut(s)	135, 186
MwoI	GCNNNNNNNGC	4 cut(s)	965, 2074, 2897, 2990
NdeI	CATATG	2 cut(s)	860, 2290
NlaIII	CATG	7 cut(s)	500, 1367, 1439, 1559, 2269, 2656, 2822
NlaIV	GGNNCC	3 cut(s)	349, 821, 2874
NmuCI	GTSAC	3 cut(s)	575, 2096, 2480
NsiI	ATGCAT	1 cut(s)	1437
NspI	RCATGY	3 cut(s)	1439, 2269, 2822
NspV	TTCGAA	1 cut(s)	1666
PaeR7I	CTCGAG	1 cut(s)	2904
PagI	TCATGA	2 cut(s)	496, 1363
PaqCI	CACCTGC	1 cut(s)	2885
PciI	ACATGT	2 cut(s)	2265, 2818
PciSI	GCTCTTC	1 cut(s)	2415
PctI	GAATGC	1 cut(s)	880
PfeI	GAWTC	6 cut(s)	239, 897, 1885, 2040, 2769, 2930
PflMI	CCANNNNNTGG	1 cut(s)	1655
PfoI	TCCNGGA	1 cut(s)	263
PkrI	GCNGC	7 cut(s)	28, 137, 214, 608, 2508, 2893, 2986
Ple19I	CGATCG	1 cut(s)	2306
PleI	GAGTC	3 cut(s)	95, 859, 1917
PpsI	GAGTC	3 cut(s)	95, 859, 1917
PscI	ACATGT	2 cut(s)	2265, 2818
PsiI	TTATAA	4 cut(s)	408, 734, 1415, 2834
Psp124BI	GAGCTC	1 cut(s)	2427
Psp6I	CCWGG	4 cut(s)	263, 2427, 2529, 2572
PspFI	CCCAGC	1 cut(s)	1020
PspGI	CCWGG	4 cut(s)	263, 2427, 2529, 2572
PspN4I	GGNNCC	3 cut(s)	349, 821, 2874
PspPI	GGNCC	2 cut(s)	348, 847
PstI	CTGCAG	1 cut(s)	2777
PsuI	RGATCY	4 cut(s)	819, 1496, 1978, 2009
PvuI	CGATCG	1 cut(s)	2306
RsaI	GTAC	6 cut(s)	280, 1116, 1200, 1962, 2467, 2706
RsaNI	GTAC	6 cut(s)	279, 1115, 1199, 1961, 2466, 2705
RseI	CAYNNNNRTG	1 cut(s)	1145
SacI	GAGCTC	1 cut(s)	2427
SacII	CCGCGG	1 cut(s)	136
SapI	GCTCTTC	1 cut(s)	2415
SatI	GCNGC	7 cut(s)	27, 136, 213, 607, 2507, 2892, 2985
Sau96I	GGNCC	2 cut(s)	348, 847
ScaI	AGTACT	1 cut(s)	1200
SchI	GAGTC	3 cut(s)	96, 859, 1918
ScrFI	CCNGG	4 cut(s)	265, 2429, 2531, 2574
SduI	GDGCHC	3 cut(s)	1152, 1734, 2427
SfcI	CTRYAG	1 cut(s)	2773
Sfr274I	CTCGAG	1 cut(s)	2904
Sfr303I	CCGCGG	1 cut(s)	136
SfuI	TTCGAA	1 cut(s)	1666
SgrBI	CCGCGG	1 cut(s)	136
SinI	GGWCC	2 cut(s)	348, 847
SlaI	CTCGAG	1 cut(s)	2904
SmiMI	CAYNNNNRTG	1 cut(s)	1145
SmlI	CTYRAG	5 cut(s)	79, 867, 1897, 2735, 2904
SmoI	CTYRAG	5 cut(s)	79, 867, 1897, 2735, 2904
SpeI	ACTAGT	1 cut(s)	544
SsiI	CCGC	7 cut(s)	133, 135, 184, 606, 1548, 1984, 2991
SspI	AATATT	1 cut(s)	2845
SspMI	CTAG	8 cut(s)	473, 545, 1004, 1478, 1889, 1976, 2241, 2658
SstI	GAGCTC	1 cut(s)	2427
StyD4I	CCNGG	4 cut(s)	263, 2427, 2529, 2572
StyI	CCWWGG	1 cut(s)	2090
TaaI	ACNGT	6 cut(s)	283, 517, 581, 1029, 1622, 2938
TaiI	ACGT	2 cut(s)	1427, 2153
TaqI	TCGA	7 cut(s)	392, 884, 997, 1051, 1666, 2302, 2905
TaqII	GACCGA	1 cut(s)	492
TatI	WGTACW	3 cut(s)	1114, 1198, 2465
TauI	GCSGC	2 cut(s)	138, 609
TfiI	GAWTC	6 cut(s)	239, 897, 1885, 2040, 2769, 2930
TseFI	GTSAC	3 cut(s)	575, 2096, 2480
TseI	GCWGC	5 cut(s)	26, 212, 2506, 2891, 2984
Tsp45I	GTSAC	3 cut(s)	575, 2096, 2480
TspDTI	ATGAA	8 cut(s)	46, 336, 513, 666, 800, 810, 2019, 2352
TspGWI	ACGGA	1 cut(s)	2423
Van91I	CCANNNNNTGG	1 cut(s)	1655
VpaK11BI	GGWCC	2 cut(s)	348, 847
XapI	RAATTY	6 cut(s)	774, 1074, 1449, 1600, 1859, 2594
XbaI	TCTAGA	1 cut(s)	1975
XceI	RCATGY	3 cut(s)	1439, 2269, 2822
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2455
XhoI	CTCGAG	1 cut(s)	2904
XmiI	GTMKAC	2 cut(s)	1168, 1218
XspI	CTAG	8 cut(s)	473, 545, 1004, 1478, 1889, 1976, 2241, 2658
ZrmI	AGTACT	1 cut(s)	1200
Zsp2I	ATGCAT	1 cut(s)	1437

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.