Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000054.1

Orthogroup ID

OG0000069

Physical Location & Seq

Genomic Coordinates Reverse (-)

131819 .. 135708

Gene Structure 3890 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000054.1_g000033.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2952 bp

atggctgaggcggtagtttcctttgtggttgaagggctgggagacttcatcatccaagaagggaagttcttgtatggagtcagcgatcaagttgagcttgcacaaactgagctacaattaatgaagggtttcctcaaagatgctgatgcaagacaaggagataatgaaactgttcgtatctgcgttgcaaaaatcagagaggctgcttatgatttggaagatgtcattgaaatctatgccttgaaagtggcttgcaagagggagggacgtattaaaagtgtgctcaagaggtttggttgcatgttgaaggaaggagttgatctccacaagattggggcggaaatccgagtcatcaccaccaatatttctgatctgaggttgtgtttgcaaactaacaacattagagaactaagggacggtactgaaggtgtcacttctgtgtatgagaggcagcaacaactcaggcgaacttattctcatataattgatcgtgatgttgttgggttggaggagagcgtcagagaattggctatgcatttggttaagagtggagacagacaccgagttgtttctatttgtgggatgggggggttggggaaaacaactcttgcaaaacaggtgtatcatgatagtgaagttcggcagcactttgattcttttgcttgggtgtgcatatctcaacgatgtcaagtaagagacgtttgggaagagatcttgattaaagtttctgccctgcaaagagaggagattgcaaaattgaaggatggtgaaatagccaagaagctttatcttgtgcaacaagagagtaaatgtttggtagtaattgatgacatatggagtgttgggacatgggacactctgaaagctgcatttcctttgtgtgaggaaaccaagagcagaatattactcaccactcgcaaggaagaagtagctttgcattcagatagaaatggtttcctcttccggcctcgaccactaattgatgatgaaagctggcaactgttggagaagatagcaatatctggaagagatgaaataaattctggaatctccacaaggaagaaagatttaggaaagaagatgcttcagtgctgtgcaggtttgccattagccatcactgtgcttgcaggacttcttgcaagaaaggacacagttgatgagtgggatatggtgtataaaaatgttcatacatccattggaagaggcaaaggccacgaacaagaatgcagcggtgcatcgtgggtgttggcattgagttatgatgacttaccatatcacttaaaaccgtgctttctgtacttaggtaattttcctgaagattctgatataccagtgaaaaaattgactcaattatggatagcagaaggttttatatctgcatcacatgagacaatggaggatgcagcatacggctatttaactgagctggtagaaagatgtgtggtacaaattggggaacagggttctgttagaaagattaaatcttgtcatctgcatgatctcatgcgagacatgtgcttagaaaaggcgaaagaggagaactttctccagaatgtcgatttttcacatcaaaacaggactcctgtttcttcttccatggttaccaatgctacagaaacggttaaagttcgaagacttgcaatttatctgaatagtaatgttgatgaattggttccattgaggaaccacaaagacagccaccttcggtctctactgtactttgccccagtaaattgcattctcaaagatgagaagttagtaggatcgttggttaagaacttcagattgcttcgagttttgaagtttgaaggtatggtaacatcaggagaactgccgaatgagattggcaacatggtccacttaagatttttgagtctgtggcgtactcacgtaacaaggcttccatcctccctaggtaaattgatctgtttgcaaactctcaatttaaagttttgtaactgtcgggcagttccaaatgtgatttggaagatggaacaactgaggcatttgtatttacccttgtattggacctcacatccaaaattgcgactgtctactcttcgcaatttgcagactttagatcatgtttcaagtctctgttctgacctgactgatctctctgaattaagaaacctgaggaaactggggatacgagtgacaaccagcttggaaaagttggaggaaattttgaaatctataagcagcacacttgatggcattcgatctctccgtgttttcagttggcttggaactaatagtggtacagaggttacacaaatagtgttgagttgtcgtcatatatacaagttggttttgaatgggcgaactgtagagttgccaaacgattttcatgactttccaaacctcacaaagataacattggttcactgtgatctcaaggacaaccaaatggctgtgctagagaagctgccaaaccttaaaactctttgcctgatggaggagactttcgagtacaagaatacaaagacactagttttctccaaaggtggctttcctcatcttgaatgtctttcacttatttgcatacgagaagcagaggacgtggaggtggaagaaggggccatgcctaggctccgccgtttgtacataaaacgttgccacaaattgaagacaattccagatgggctgagatatgttactagcctcaagaaactaaccgtagcaatgcctagatcattcgttagcaggcttcaagttggaggagaggattactataaaatcgagcacgtgccttgtgttgtacttacgagggatcggagagcagggaaaacgacgccgttggggttgagtcggtatacgccggtgttcgagatacttgaggtgttaccgatgctgacattggaggatcttaaagatatggggataaactccgtcggatccaggcggaaaatgtacagtgatatccagaagcttcgcaaggggttctcgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001101 GO:0002230 GO:0002238 GO:0002239 GO:0002252 GO:0002376 GO:0002682 GO:0002697 GO:0002831 GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008219 GO:0009314 GO:0009416 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009615 GO:0009620 GO:0009626 GO:0009628 GO:0009637 GO:0009642 GO:0009646 GO:0009719 GO:0009725 GO:0009751 GO:0009987 GO:0010033 GO:0012501 GO:0014070 GO:0016020 GO:0023052 GO:0030054 GO:0031347 GO:0032101 GO:0032870 GO:0033554 GO:0034050 GO:0035690 GO:0036094 GO:0042221 GO:0042493 GO:0043207 GO:0043900 GO:0044464 GO:0045087 GO:0046677 GO:0048583 GO:0050688 GO:0050691 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051607 GO:0051704 GO:0051707 GO:0051716 GO:0055044 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071407 GO:0071446 GO:0071495 GO:0071944 GO:0080134 GO:0097159 GO:0098542 GO:1901265 GO:1901363 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NB-ARC

Protein Analysis

983

Amino Acids

112.07

Weight (kDa)

8.53

Isoelectric Point (pI)

40.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000069)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10920 AT1G10920 AT1G10920 AT1G10920 AT1G10920 AT1G50180 AT1G53350 AT1G58390 AT1G58390 AT1G58400 AT1G58400 AT1G58400 AT1G58410 AT1G58410 AT1G58410 AT1G58410 AT1G58602 AT1G58602 AT1G58807 AT1G58807 AT1G58848 AT1G58848 AT1G59124 AT1G59124 AT1G59218 AT1G59218 AT1G59218 AT1G59620 AT1G59780 AT1G59780 AT5G35450 AT5G35450 AT5G43470 AT5G43470 AT5G43470 AT5G43470 AT5G48620 AT5G48620 AT5G48620 AT5G48620 AT5G48620 AT5G48620
fragaria_vesca	FvH4_4g04072 FvH4_4g22931 FvH4_4g22931 FvH4_4g22940 FvH4_6g49940 FvH4_6g49940 FvH4_7g08100 FvH4_7g08870 FvH4_7g08870 FvH4_7g09280 FvH4_7g09290 FvH4_7g15190 FvH4_7g15200 FvH4_7g15240 FvH4_7g15240 FvH4_7g33440
malus_domestica	MD00G1174600.v1.1 MD01G1113700.v1.1 MD03G1071300.v1.1 MD04G1041500.v1.1 MD04G1238000.v1.1 MD07G1029000.v1.1 MD07G1092100.v1.1 MD07G1092300.v1.1 MD07G1092600.v1.1 MD12G1256300.v1.1 MD13G1128200.v1.1 MD13G1128400.v1.1 MD17G1268000.v1.1
prunus_persica	Prupe.1G041300_v2.0.a1 Prupe.1G041300_v2.0.a1 Prupe.1G042900_v2.0.a1 Prupe.1G043100_v2.0.a1 Prupe.1G043100_v2.0.a1 Prupe.1G043100_v2.0.a1 Prupe.1G043100_v2.0.a1 Prupe.1G043600_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G046700_v2.0.a1 Prupe.1G047700_v2.0.a1 Prupe.1G047900_v2.0.a1 Prupe.1G048000_v2.0.a1 Prupe.1G048500_v2.0.a1 Prupe.1G048500_v2.0.a1 Prupe.1G049900_v2.0.a1 Prupe.1G051500_v2.0.a1 Prupe.1G051800_v2.0.a1 Prupe.1G051900_v2.0.a1 Prupe.1G052200_v2.0.a1 Prupe.1G194900_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217900_v2.0.a1 Prupe.1G217900_v2.0.a1 Prupe.1G217900_v2.0.a1 Prupe.1G217900_v2.0.a1 Prupe.1G217900_v2.0.a1 Prupe.2G117200_v2.0.a1 Prupe.2G117200_v2.0.a1 Prupe.2G117200_v2.0.a1 Prupe.2G117200_v2.0.a1 Prupe.2G117300_v2.0.a1 Prupe.2G117400_v2.0.a1 Prupe.2G117500_v2.0.a1 Prupe.2G117700_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G119900_v2.0.a1
pyrus_communis	pycom03g05750 pycom04g21110 pycom07g07530 pycom07g07590 pycom13g11110 pycom13g11140 pycom13g11160 pycom13g11170 pycom17g26680
rosa_chinensis	RchiOBHm_Chr1g0341231 RchiOBHm_Chr1g0344091 RchiOBHm_Chr1g0344161 RchiOBHm_Chr1g0345001 RchiOBHm_Chr1g0345351 RchiOBHm_Chr1g0345371 RchiOBHm_Chr1g0345391 RchiOBHm_Chr1g0345531 RchiOBHm_Chr1g0345551 RchiOBHm_Chr1g0345571 RchiOBHm_Chr1g0345581 RchiOBHm_Chr1g0345661 RchiOBHm_Chr1g0345691 RchiOBHm_Chr1g0345761 RchiOBHm_Chr1g0345791 RchiOBHm_Chr1g0345821 RchiOBHm_Chr1g0345911 RchiOBHm_Chr1g0345941 RchiOBHm_Chr1g0357611 RchiOBHm_Chr1g0357911 RchiOBHm_Chr1g0357921 RchiOBHm_Chr1g0357931 RchiOBHm_Chr1g0357971 RchiOBHm_Chr1g0358121 RchiOBHm_Chr1g0383491 RchiOBHm_Chr1g0383511 RchiOBHm_Chr1g0383521 RchiOBHm_Chr3g0480581 RchiOBHm_Chr4g0394341 RchiOBHm_Chr4g0394361 RchiOBHm_Chr4g0394411 RchiOBHm_Chr4g0394441 RchiOBHm_Chr4g0407681 RchiOBHm_Chr4g0429191 RchiOBHm_Chr4g0429201 RchiOBHm_Chr4g0429211 RchiOBHm_Chr4g0429221 RchiOBHm_Chr6g0265091
rosa_laevigata	RLG00000007088 RLG00000008700 RLG00000009190 RLG00000009702 RLG00000014210 RLG00000028829 RLG00000028833 RLG00000028837 RLG00000028838 RLG00000028921 RLG00000028926
rosa_multiflora	Rmu_co8366955.1_g000001 Rmu_co8394205.1_g000001 Rmu_sc0000019.1_g000001 Rmu_sc0000054.1_g000031 Rmu_sc0000054.1_g000033 Rmu_sc0000200.1_g000002 Rmu_sc0000200.1_g000007 Rmu_sc0000200.1_g000018 Rmu_sc0000200.1_g000020 Rmu_sc0000200.1_g000021 Rmu_sc0000251.1_g000012 Rmu_sc0000251.1_g000015 Rmu_sc0000251.1_g000028 Rmu_sc0000253.1_g000015 Rmu_sc0000255.1_g000045 Rmu_sc0000255.1_g000046 Rmu_sc0001292.1_g000013 Rmu_sc0001292.1_g000018 Rmu_sc0001292.1_g000028 Rmu_sc0001292.1_g000029 Rmu_sc0001349.1_g000006 Rmu_sc0001349.1_g000014 Rmu_sc0001582.1_g000006 Rmu_sc0001582.1_g000018 Rmu_sc0001582.1_g000020 Rmu_sc0001692.1_g000007 Rmu_sc0001692.1_g000024 Rmu_sc0001692.1_g000026 Rmu_sc0001692.1_g000029 Rmu_sc0001692.1_g000030 Rmu_sc0001835.1_g000006 Rmu_sc0001835.1_g000010 Rmu_sc0002071.1_g000005 Rmu_sc0002276.1_g000002 Rmu_sc0002276.1_g000009 Rmu_sc0002329.1_g000018 Rmu_sc0002329.1_g000023 Rmu_sc0002329.1_g000025 Rmu_sc0002523.1_g000005 Rmu_sc0003573.1_g000005 Rmu_sc0003573.1_g000006 Rmu_sc0004099.1_g000021 Rmu_sc0005812.1_g000009 Rmu_sc0006271.1_g000002 Rmu_sc0006287.1_g000038 Rmu_sc0006439.1_g000008 Rmu_sc0007456.1_g000004 Rmu_sc0007581.1_g000009 Rmu_sc0007849.1_g000014 Rmu_sc0008115.1_g000012 Rmu_sc0010521.1_g000004 Rmu_sc0012471.1_g000017 Rmu_sc0014762.1_g000001 Rmu_sc0015150.1_g000003 Rmu_sc0017221.1_g000001 Rmu_sc0017299.1_g000001 Rmu_sc0017299.1_g000002 Rmu_sc0021457.1_g000001 Rmu_sc0022067.1_g000001 Rmu_sc0033275.1_g000001 Rmu_ssc0000245.1_g000012 Rmu_ssc0000359.1_g000035 Rmu_ssc0000359.1_g000067 Rmu_ssc0000359.1_g000072 Rmu_ssc0000434.1_g000005 Rmu_ssc0000434.1_g000007
rosa_roxburghii	Rroxscaffold_4G00298420 Rroxscaffold_4G00298720 Rroxscaffold_4G00308990 Rroxscaffold_4G00309000 Rroxscaffold_4G00309010 Rroxscaffold_4G00309050 Rroxscaffold_4G00309070 Rroxscaffold_4G00309100 Rroxscaffold_4G00310030 Rroxscaffold_4G00310050 Rroxscaffold_4G00311880 Rroxscaffold_5G00339420 Rroxscaffold_5G00339450 Rroxscaffold_5G00344880 Rroxscaffold_5G00352270 Rroxscaffold_5G00362240 Rroxscaffold_5G00370840 Rroxscaffold_7G00202970
rosa_rugosa	Rorug01G0159100.1 Rorug01G0159200.1 Rorug01G0171700 Rorug01G0171900 Rorug01G0172000 Rorug01G0191700 Rorug01G0191800 Rorug01G0256900 Rorug01G0257000 Rorug01G0257100 Rorug03G0198000 Rorug03G0366300.1 Rorug03G0366400.1 Rorug03G0366500.1 Rorug04G0081200 Rorug04G0081200 Rorug04G0081200 Rorug04G0233700 Rorug04G0233800 Rorug04G0233800 Rorug06G0013300
rosa_samantha	Rh1CG138800 Rh1CG161300 Rh1CG173800 Rh1CG179800 Rh1CG180100 Rh1CG180500 Rh1CG180800 Rh1CG180900 Rh1CG194100 Rh1DG205100 Rh3AG236300 Rh4AG052000 Rh4AG052100 Rh4AG145900 Rh4AG289700 Rh4AG289800 Rh6AG136800 Rh6AG137300 Rh6BG133600 Rh6CG132000 Rh6CG134000 Rh6DG119300
rosa_wichuraiana	Rw0G003420 Rw1G015500 Rw1G016110 Rw1G016180 Rw1G016210 Rw1G016230 Rw1G016280 Rw1G016440 Rw1G016450 Rw1G016460 Rw1G016480 Rw1G017490 Rw1G024140 Rw1G024160 Rw3G022530 Rw4G004140 Rw4G004190 Rw4G011850 Rw6G011800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1088
AccI	GTMKAC	2 cut(s)	2054, 2816
AciI	CCGC	5 cut(s)	11, 338, 1230, 2596, 2905
AclI	AACGTT	1 cut(s)	2614
AclWI	GGATC	5 cut(s)	1771, 2781, 2874, 2892, 2905
AcsI	RAATTY	2 cut(s)	1039, 2184
AcuI	CTGAAG	4 cut(s)	444, 1070, 1335, 1765
AcvI	CACGTG	1 cut(s)	2749
AcyI	GRCGYC	1 cut(s)	2795
AfiI	CCNNNNNNNGG	3 cut(s)	2025, 2458, 2589
AflII	CTTAAG	1 cut(s)	1861
AflIII	ACRYGT	1 cut(s)	1512
AhlI	ACTAGT	1 cut(s)	2491
AjiI	CACGTC	1 cut(s)	2563
AjnI	CCWGG	1 cut(s)	2900
AleI	CACNNNNGTG	1 cut(s)	437
Alw21I	GWGCWC	2 cut(s)	285, 2748
Alw26I	GTCTC	8 cut(s)	36, 546, 690, 1382, 1503, 1713, 2099, 2456
AlwI	GGATC	5 cut(s)	1771, 2781, 2874, 2892, 2905
AoxI	GGCC	3 cut(s)	965, 1210, 2580
ApeKI	GCWGC	8 cut(s)	203, 451, 643, 866, 1227, 1403, 2202, 2428
ApoI	RAATTY	2 cut(s)	1039, 2184
AseI	ATTAAT	1 cut(s)	119
Asp700I	GAANNNNTTC	4 cut(s)	128, 171, 472, 1671
AspA2I	CCTAGG	2 cut(s)	1912, 2588
AspS9I	GGNCC	3 cut(s)	1855, 2028, 2580
AsuHPI	GGTGA	3 cut(s)	346, 779, 901
AsuII	TTCGAA	1 cut(s)	1630
AvaII	GGWCC	2 cut(s)	1855, 2028
AvrII	CCTAGG	2 cut(s)	1912, 2588
AxyI	CCTNAGG	1 cut(s)	2135
BaeI	ACNNNNGTAYC	4 cut(s)	605, 638, 2253, 2286
BamHI	GGATCC	1 cut(s)	2897
BarI	GAAGNNNNNNTAC	2 cut(s)	1884, 1916
BauI	CACGAG	1 cut(s)	2947
BbrPI	CACGTG	1 cut(s)	2749
BbsI	GAAGAC	2 cut(s)	1639, 2636
Bbv12I	GWGCWC	2 cut(s)	285, 2748
BbvCI	CCTCAGC	1 cut(s)	6
BbvI	GCAGC	8 cut(s)	190, 463, 655, 853, 1239, 1415, 2214, 2415
BccI	CCATC	8 cut(s)	577, 758, 1121, 1912, 1984, 2207, 2449, 2636
BceAI	ACGGC	3 cut(s)	1426, 2583, 2782
BcgI	CGANNNNNNTGC	2 cut(s)	1497, 1531
BciT130I	CCWGG	1 cut(s)	2902
BciVI	GTATCC	1 cut(s)	2142
BcoDI	GTCTC	8 cut(s)	36, 546, 690, 1382, 1503, 1713, 2099, 2456
BcuI	ACTAGT	1 cut(s)	2491
BfaI	CTAG	6 cut(s)	1913, 2420, 2492, 2589, 2661, 2691
BfmI	CTRYAG	2 cut(s)	1611, 2328
BfrI	CTTAAG	1 cut(s)	1861
BfuAI	ACCTGC	1 cut(s)	1088
BfuI	GTATCC	1 cut(s)	2142
BglII	AGATCT	1 cut(s)	711
BisI	GCNGC	8 cut(s)	204, 452, 644, 867, 1228, 1404, 2203, 2429
BlnI	CCTAGG	2 cut(s)	1912, 2588
BlsI	GCNGC	8 cut(s)	205, 453, 645, 868, 1229, 1405, 2204, 2430
Bme1390I	CCNGG	1 cut(s)	2902
Bme18I	GGWCC	2 cut(s)	1855, 2028
BmgBI	CACGTC	1 cut(s)	2563
BmgT120I	GGNCC	3 cut(s)	1855, 2028, 2580
BmiI	GGNNCC	5 cut(s)	1674, 1685, 2581, 2594, 2899
BmrFI	CCNGG	1 cut(s)	2902
BmrI	ACTGGG	2 cut(s)	1721, 2153
BmsI	GCATC	7 cut(s)	130, 136, 1071, 1244, 1388, 1390, 2841
BmuI	ACTGGG	2 cut(s)	1721, 2153
BpiI	GAAGAC	2 cut(s)	1639, 2636
BplI	GAGNNNNNCTC	2 cut(s)	306, 338
BpmI	CTGGAG	1 cut(s)	1532
Bpu10I	CCTNAGC	1 cut(s)	6
Bpu14I	TTCGAA	1 cut(s)	1630
BpuEI	CTTGAG	4 cut(s)	269, 2381, 2651, 2858
BsaAI	YACGTR	2 cut(s)	1891, 2749
BsaHI	GRCGYC	1 cut(s)	2795
BsaI	GGTCTC	1 cut(s)	1713
BsaJI	CCNNGG	3 cut(s)	1596, 1912, 2588
Bsc4I	CCNNNNNNNGG	3 cut(s)	2025, 2458, 2589
Bse118I	RCCGGY	1 cut(s)	2821
Bse1I	ACTGG	3 cut(s)	1331, 1727, 2148
Bse21I	CCTNAGG	1 cut(s)	2135
Bse3DI	GCAATG	1 cut(s)	2691
BseBI	CCWGG	1 cut(s)	2902
BseDI	CCNNGG	3 cut(s)	1596, 1912, 2588
BseGI	GGATG	7 cut(s)	51, 588, 769, 1190, 1405, 1904, 2035
BseLI	CCNNNNNNNGG	3 cut(s)	2025, 2458, 2589
BseMI	GCAATG	1 cut(s)	2691
BseMII	CTCAG	7 cut(s)	99, 365, 475, 1413, 1991, 2126, 2639
BseNI	ACTGG	3 cut(s)	1331, 1727, 2148
BseRI	GAGGAG	5 cut(s)	524, 758, 1550, 2474, 2736
BseXI	GCAGC	8 cut(s)	190, 463, 655, 853, 1239, 1415, 2214, 2415
BseYI	CCCAGC	1 cut(s)	37
BsgI	GTGCAG	1 cut(s)	1116
BshFI	GGCC	3 cut(s)	967, 1212, 2582
BsiHKAI	GWGCWC	2 cut(s)	285, 2748
BsiSI	CCGG	2 cut(s)	964, 2822
BslFI	GGGAC	4 cut(s)	279, 428, 859, 866
BslI	CCNNNNNNNGG	3 cut(s)	2025, 2458, 2589
BsmAI	GTCTC	8 cut(s)	36, 546, 690, 1382, 1503, 1713, 2099, 2456
BsmBI	CGTCTC	1 cut(s)	690
BsmFI	GGGAC	4 cut(s)	279, 428, 859, 866
BsmI	GAATGC	4 cut(s)	937, 1229, 1737, 2217
BsnI	GGCC	3 cut(s)	967, 1212, 2582
Bso31I	GGTCTC	1 cut(s)	1713
Bsp119I	TTCGAA	1 cut(s)	1630
Bsp1286I	GDGCHC	2 cut(s)	285, 2748
Bsp1407I	TGTACA	2 cut(s)	2604, 2913
Bsp19I	CCATGG	1 cut(s)	1596
BspACI	CCGC	5 cut(s)	11, 338, 1230, 2596, 2905
BspANI	GGCC	3 cut(s)	967, 1212, 2582
BspCNI	CTCAG	7 cut(s)	100, 366, 474, 1414, 1992, 2127, 2640
BspHI	TCATGA	2 cut(s)	625, 2350
BspLI	GGNNCC	5 cut(s)	1674, 1685, 2581, 2594, 2899
BspMI	ACCTGC	1 cut(s)	1088
BspPI	GGATC	5 cut(s)	1771, 2781, 2874, 2892, 2905
BspT104I	TTCGAA	1 cut(s)	1630
BspTI	CTTAAG	1 cut(s)	1861
BspTNI	GGTCTC	1 cut(s)	1713
BsrDI	GCAATG	1 cut(s)	2691
BsrFI	RCCGGY	1 cut(s)	2821
BsrGI	TGTACA	2 cut(s)	2604, 2913
BsrI	ACTGG	3 cut(s)	1331, 1727, 2148
BssAI	RCCGGY	1 cut(s)	2821
BssECI	CCNNGG	3 cut(s)	1596, 1912, 2588
BssNAI	GTATAC	1 cut(s)	2817
BssNI	GRCGYC	1 cut(s)	2795
BssSI	CACGAG	1 cut(s)	2947
BssT1I	CCWWGG	3 cut(s)	1596, 1912, 2588
Bst1107I	GTATAC	1 cut(s)	2817
Bst2BI	CACGAG	1 cut(s)	2947
Bst2UI	CCWGG	1 cut(s)	2902
Bst6I	CTCTTC	5 cut(s)	702, 965, 1021, 1195, 2064
BstACI	GRCGYC	1 cut(s)	2795
BstAFI	CTTAAG	1 cut(s)	1861
BstAUI	TGTACA	2 cut(s)	2604, 2913
BstBAI	YACGTR	2 cut(s)	1891, 2749
BstBI	TTCGAA	1 cut(s)	1630
BstC8I	GCNNGC	5 cut(s)	99, 253, 995, 1125, 2708
BstDSI	CCRYGG	1 cut(s)	1596
BstEII	GGTNACC	1 cut(s)	1600
BstENI	CCTNNNNNAGG	1 cut(s)	2456
BstF5I	GGATG	7 cut(s)	51, 588, 769, 1190, 1405, 1904, 2035
BstMAI	GTCTC	8 cut(s)	36, 546, 690, 1382, 1503, 1713, 2099, 2456
BstMWI	GCNNNNNNNGC	1 cut(s)	2425
BstNI	CCWGG	1 cut(s)	2902
BstNSI	RCATGY	2 cut(s)	304, 1516
BstPI	GGTNACC	1 cut(s)	1600
BstSCI	CCNGG	1 cut(s)	2900
BstSFI	CTRYAG	2 cut(s)	1611, 2328
BstV1I	GCAGC	8 cut(s)	190, 463, 655, 853, 1239, 1415, 2214, 2415
BstV2I	GAAGAC	2 cut(s)	1639, 2636
BstX2I	RGATCY	3 cut(s)	711, 2866, 2897
BstXI	CCANNNNNNTGG	1 cut(s)	332
BstYI	RGATCY	3 cut(s)	711, 2866, 2897
BstZ17I	GTATAC	1 cut(s)	2817
Bsu36I	CCTNAGG	1 cut(s)	2135
BsuI	GTATCC	1 cut(s)	2142
BsuRI	GGCC	3 cut(s)	967, 1212, 2582
BtgI	CCRYGG	1 cut(s)	1596
BtrI	CACGTC	1 cut(s)	2563
BtsCI	GGATG	7 cut(s)	51, 588, 769, 1190, 1405, 1904, 2035
BtsIMutI	CAGTG	5 cut(s)	1094, 1116, 1338, 2386, 2923
BveI	ACCTGC	1 cut(s)	1088
Cac8I	GCNNGC	5 cut(s)	99, 253, 995, 1125, 2708
CciI	TCATGA	2 cut(s)	625, 2350
Cfr10I	RCCGGY	1 cut(s)	2821
Cfr13I	GGNCC	3 cut(s)	1855, 2028, 2580
CseI	GACGC	2 cut(s)	505, 2803
DraI	TTTAAA	1 cut(s)	1947
Eam1104I	CTCTTC	5 cut(s)	702, 965, 1021, 1195, 2064
EarI	CTCTTC	5 cut(s)	702, 965, 1021, 1195, 2064
EciI	GGCGGA	3 cut(s)	353, 2585, 2920
Eco130I	CCWWGG	3 cut(s)	1596, 1912, 2588
Eco31I	GGTCTC	1 cut(s)	1713
Eco32I	GATATC	1 cut(s)	2923
Eco47I	GGWCC	2 cut(s)	1855, 2028
Eco57I	CTGAAG	4 cut(s)	444, 1070, 1335, 1765
Eco72I	CACGTG	1 cut(s)	2749
Eco81I	CCTNAGG	1 cut(s)	2135
Eco91I	GGTNACC	1 cut(s)	1600
EcoNI	CCTNNNNNAGG	1 cut(s)	2456
EcoO65I	GGTNACC	1 cut(s)	1600
EcoRII	CCWGG	1 cut(s)	2900
EcoRV	GATATC	1 cut(s)	2923
EcoT14I	CCWWGG	3 cut(s)	1596, 1912, 2588
EcoT22I	ATGCAT	1 cut(s)	537
ErhI	CCWWGG	3 cut(s)	1596, 1912, 2588
Esp3I	CGTCTC	1 cut(s)	690
FalI	AAGNNNNNCTT	2 cut(s)	81, 113
FaqI	GGGAC	4 cut(s)	279, 428, 859, 866
FauNDI	CATATG	1 cut(s)	833
FblI	GTMKAC	2 cut(s)	2054, 2816
Fnu4HI	GCNGC	8 cut(s)	204, 452, 644, 867, 1228, 1404, 2203, 2429
FokI	GGATG	7 cut(s)	38, 595, 776, 1177, 1412, 1891, 2022
Fsp4HI	GCNGC	8 cut(s)	204, 452, 644, 867, 1228, 1404, 2203, 2429
FspBI	CTAG	6 cut(s)	1913, 2420, 2492, 2589, 2661, 2691
GluI	GCNGC	8 cut(s)	204, 452, 644, 867, 1228, 1404, 2203, 2429
GsaI	CCCAGC	1 cut(s)	41
GsuI	CTGGAG	1 cut(s)	1532
HaeIII	GGCC	3 cut(s)	967, 1212, 2582
HapII	CCGG	2 cut(s)	964, 2822
HgaI	GACGC	2 cut(s)	505, 2803
Hin1I	GRCGYC	1 cut(s)	2795
HindIII	AAGCTT	2 cut(s)	782, 2930
HinfI	GANTC	9 cut(s)	78, 348, 653, 1047, 1319, 1345, 1579, 1873, 2809
HpaII	CCGG	2 cut(s)	964, 2822
HphI	GGTGA	3 cut(s)	346, 779, 901
Hpy166II	GTNNAC	4 cut(s)	1858, 2055, 2386, 2817
Hpy8I	GTNNAC	4 cut(s)	1858, 2055, 2386, 2817
Hpy99I	CGWCG	2 cut(s)	2797, 2897
HpyCH4IV	ACGT	6 cut(s)	268, 699, 1890, 2562, 2614, 2748
HpyF10VI	GCNNNNNNNGC	1 cut(s)	2425
HpySE526I	ACGT	6 cut(s)	268, 699, 1890, 2562, 2614, 2748
Hsp92I	GRCGYC	1 cut(s)	2795
LmnI	GCTCC	1 cut(s)	2598
Lsp1109I	GCAGC	8 cut(s)	190, 463, 655, 853, 1239, 1415, 2214, 2415
LweI	GCATC	7 cut(s)	130, 136, 1071, 1244, 1388, 1390, 2841
MaeI	CTAG	6 cut(s)	1913, 2420, 2492, 2589, 2661, 2691
MaeII	ACGT	6 cut(s)	268, 699, 1890, 2562, 2614, 2748
MaeIII	GTNAC	9 cut(s)	430, 1600, 1816, 1891, 1955, 2155, 2269, 2656, 2844
MflI	RGATCY	3 cut(s)	711, 2866, 2897
MhlI	GDGCHC	2 cut(s)	285, 2748
MlyI	GAGTC	6 cut(s)	87, 357, 1339, 1573, 1882, 2818
MmeI	TCCRAC	5 cut(s)	486, 984, 2157, 2698, 2875
Mph1103I	ATGCAT	1 cut(s)	537
MroXI	GAANNNNTTC	4 cut(s)	128, 171, 472, 1671
MslI	CAYNNNNRTG	4 cut(s)	437, 630, 1118, 1494
MspA1I	CMGCKG	1 cut(s)	1230
MspCI	CTTAAG	1 cut(s)	1861
MspI	CCGG	2 cut(s)	964, 2822
MspR9I	CCNGG	1 cut(s)	2902
Mva1269I	GAATGC	4 cut(s)	937, 1229, 1737, 2217
MvaI	CCWGG	1 cut(s)	2902
MwoI	GCNNNNNNNGC	1 cut(s)	2425
NcoI	CCATGG	1 cut(s)	1596
NdeI	CATATG	1 cut(s)	833
NlaIV	GGNNCC	5 cut(s)	1674, 1685, 2581, 2594, 2899
NmuCI	GTSAC	2 cut(s)	430, 2155
NsiI	ATGCAT	1 cut(s)	537
NspI	RCATGY	2 cut(s)	304, 1516
NspV	TTCGAA	1 cut(s)	1630
OliI	CACNNNNGTG	1 cut(s)	437
PagI	TCATGA	2 cut(s)	625, 2350
PciI	ACATGT	1 cut(s)	1512
PcsI	WCGNNNNNNNCGW	1 cut(s)	2227
PctI	GAATGC	4 cut(s)	937, 1229, 1737, 2217
PdmI	GAANNNNTTC	4 cut(s)	128, 171, 472, 1671
PfeI	GAWTC	3 cut(s)	653, 1047, 1319
PkrI	GCNGC	8 cut(s)	205, 453, 645, 868, 1229, 1405, 2204, 2430
PleI	GAGTC	6 cut(s)	86, 356, 1339, 1573, 1881, 2817
PmaCI	CACGTG	1 cut(s)	2749
PmlI	CACGTG	1 cut(s)	2749
PpsI	GAGTC	6 cut(s)	86, 356, 1339, 1573, 1881, 2817
Ppu21I	YACGTR	2 cut(s)	1891, 2749
PscI	ACATGT	1 cut(s)	1512
PshBI	ATTAAT	1 cut(s)	119
Psp1406I	AACGTT	1 cut(s)	2614
Psp6I	CCWGG	1 cut(s)	2900
PspCI	CACGTG	1 cut(s)	2749
PspEI	GGTNACC	1 cut(s)	1600
PspFI	CCCAGC	1 cut(s)	37
PspGI	CCWGG	1 cut(s)	2900
PspN4I	GGNNCC	5 cut(s)	1674, 1685, 2581, 2594, 2899
PspPI	GGNCC	3 cut(s)	1855, 2028, 2580
PsuI	RGATCY	3 cut(s)	711, 2866, 2897
RseI	CAYNNNNRTG	4 cut(s)	437, 630, 1118, 1494
SatI	GCNGC	8 cut(s)	204, 452, 644, 867, 1228, 1404, 2203, 2429
Sau96I	GGNCC	3 cut(s)	1855, 2028, 2580
SchI	GAGTC	6 cut(s)	87, 357, 1339, 1573, 1882, 2818
ScrFI	CCNGG	1 cut(s)	2902
SduI	GDGCHC	2 cut(s)	285, 2748
SfaNI	GCATC	7 cut(s)	130, 136, 1071, 1244, 1388, 1390, 2841
SfcI	CTRYAG	2 cut(s)	1611, 2328
SfuI	TTCGAA	1 cut(s)	1630
SgrAI	CRCCGGYG	1 cut(s)	2821
SinI	GGWCC	2 cut(s)	1855, 2028
SmiMI	CAYNNNNRTG	4 cut(s)	437, 630, 1118, 1494
SmlI	CTYRAG	5 cut(s)	284, 1861, 2396, 2666, 2837
SmoI	CTYRAG	5 cut(s)	284, 1861, 2396, 2666, 2837
SpeI	ACTAGT	1 cut(s)	2491
SsiI	CCGC	5 cut(s)	11, 338, 1230, 2596, 2905
SspI	AATATT	2 cut(s)	364, 903
SspMI	CTAG	6 cut(s)	1913, 2420, 2492, 2589, 2661, 2691
StyD4I	CCNGG	1 cut(s)	2900
StyI	CCWWGG	3 cut(s)	1596, 1912, 2588
TaiI	ACGT	6 cut(s)	271, 702, 1893, 2565, 2617, 2751
TaqI	TCGA	8 cut(s)	970, 1557, 1630, 1792, 2221, 2469, 2742, 2829
TaqII	GACCGA	1 cut(s)	1695
TatI	WGTACW	6 cut(s)	1296, 1716, 2472, 2604, 2761, 2913
TfiI	GAWTC	3 cut(s)	653, 1047, 1319
TscAI	CASTG	5 cut(s)	1094, 1123, 1338, 2393, 2923
TseFI	GTSAC	2 cut(s)	430, 2155
TseI	GCWGC	8 cut(s)	203, 451, 643, 866, 1227, 1403, 2202, 2428
Tsp45I	GTSAC	2 cut(s)	430, 2155
TspDTI	ATGAA	8 cut(s)	37, 137, 180, 1002, 1047, 1175, 1680, 2339
TspGWI	ACGGA	2 cut(s)	2219, 2881
TspRI	CASTG	5 cut(s)	1094, 1123, 1338, 2393, 2923
Vha464I	CTTAAG	1 cut(s)	1861
VpaK11BI	GGWCC	2 cut(s)	1855, 2028
VspI	ATTAAT	1 cut(s)	119
XagI	CCTNNNNNAGG	1 cut(s)	2456
XapI	RAATTY	2 cut(s)	1039, 2184
XceI	RCATGY	2 cut(s)	304, 1516
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1980
XmaJI	CCTAGG	2 cut(s)	1912, 2588
XmiI	GTMKAC	2 cut(s)	2054, 2816
XmnI	GAANNNNTTC	4 cut(s)	128, 171, 472, 1671
XspI	CTAG	6 cut(s)	1913, 2420, 2492, 2589, 2661, 2691
Zsp2I	ATGCAT	1 cut(s)	537

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.