Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0000069

Physical Location & Seq

Genomic Coordinates Reverse (-)

36556706 .. 36560097

Gene Structure 3392 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G016440.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2922 bp

ATGGCGGAGGCTGTTGTGTCAATTGTTATTGAAGGAATCAAGCCCCTCGGAGACTTGATCGTTCGGGAGGCAAAATTCTTGAGTGGAGTGGGCTATCAAGTTGAGCTTGCACAAGTCGAGCTACACTTGATGAGTGCTTTCCTGAAAGATGCAGATTCAAGAACTGGAGACGATGAAGTGGTACGCATTTGGGTGAAACTGATCAGAGATGTTGCTTATGATTTGGAGGATGTTATTGAATCTTTTGCATTGAAAGTGGCTTCCAGGACGAGAGGAGGTACCATGAAGATTGCTCTGAAAAGGTTTGCCTGCGTCTTCAATGAAGGAATTGATCGTCACAAGATTGGGTCAGAAATTGAGGATATTATGACCACACTTTCTCATTTGAGGTCAAGTTTGCAAAGTTATAATATAAGACAAAGTGATCCTCCTCAACATCTGAGGCGAACCTACGCTCATGAAATTGAAAGTCATCTTGTTGGGTTAGAGGAAAGCACAGACATATTGGTGAAGGAGCTAGTGAGAGAAGGAAAGCGCCACCGTGTTGTTTCTATTTGGGGGATGGGCGGCTCTGGAAAAACAACTCTTGCAAAACAGGTCCATCTTCAAAATGAAGTTAAGCGTCATTTTGATGGTTTTGCTTGGGTGTGTATATCTCAACAATGTATCGGAAGAGATGTGTTGGAAGATATTTTAGTCAAACTCATGTCCCCACCAGAAGAGCGAAGGAAACAGATAGCAAAGATGGAAAAAGATGAAATAGCAAAGACTCTCTGTCGTATCCAAAGAGAAAAGAGATGTCTGGTGATCCTTGATGATATATGGACTCACGAGGCATGGCATTCTTTAAAACCTGGATTTCCGGTCAATGAGGAAACAGAGAGCCGGATATTACTCACCACTCGCAAGAAGGAAGTTGCCTTGCTTGCATCCAGAAATGATTTTCTCCACCAACCTCGACCTCTAGATGAAAAGCAAAGCTGGGAACTGTTTCAGAAAATAGCCATAAGTGGAAGCGACAGTACAATTTGTGCAAAGAAGACAGAATTAGGAAAGAAGATGTTGGTACATTGCTCAGGTCTCCCATTAGCCATCAGAGTGCTCGCTGGTCTTCTAAGTAGACGAGAGACAGATGATGAGTGGGAAACAGTACTTAGAAATGTTAATGTATACATAATGAGAGGCACAAATGTCCTTGATAGACAAAATACAGGTCAAGACTATGGTGTATTGAGTGTCTTGGCATTGAGTTATGATGATTTACCATCTCACTTAAAACTCTGCTTTCTATACTTGGCACAATATCCTGAGGATCATGAGATACCGGTAAAAAGATTGACTCAATTATGGATTGCAGAAGGGTTTATTACTTCAACATCAGAAATACAAGGTTCGGTGGAAATAATGGAAGATGTATCATATGGTTGCCTAACTGAACTGGTGGAAAGATCTATGGTTCAAGTTGTAAACTATGGTTTAAGTGGGAAGGTGAAAACTTGTCGTCTCCATGATCTTATGCAGGACTTGTGCTTGCAAAAGGCAAAAGAGGAGAACTTTCTCGGTATTGTTAACTTTTCTGTTGGTCCGGTATCTAATGCAACACTGATTGGTAAGGTTCGAAGACTTGCCCTCCATTTCGACGAAAAAGTTAAATATGAGTTCAGTGGTAAGGATGGAAGAGATGGCCATATCAGGTCTCTAGTATACTTTGCCCCAAGATTCTTCGAGCAAAAGTGGAACAAAAGAATAATACGATCAATATTCAATGACTTCAAATTGCTTAGAGTCTTGAAGTTTGAAAATATGTGTAGGGAGTTTGAGTTACCAAAGACGATTGGGAATCTAGTCCACTTGAGGTTTCTGACTCTGAAGGATAGTGCATTTCGTGCCTTGCCATCATCTGTATCTAATCTGGTACTTTTGCAGACTCTAGATCTGCGTGGTTGTCTTTTATCCTCTGGTTTATTAGATATTCGTTTTTCTCGGATCAGGATGACCAAAATCAGACATGTGTTTTCGAATATGGAGCAACTGAGGCATTTATATTTACCTTCTGAGCACTCTGTAAGTGGTAAGAAACTGTCATTTGCAAGGCTGCGCAATTTGCAGACGTTGCTCAATGTTTCAATCGAGAAATGTGATTTGAATGATCTTGTTCAGTTAACCAATCTGAAAAAACTAGGCATAATTGCATCACAGCCTAGTCACTTGAAAAAGTTGAAGAATGTGTTGATATTAGGAAGTATAACATATGAGCATCTTCGGTCGCTAACTTTGAGCGTGTCTCGTGGTTGTGATGATTTACCAAGAGATATTGTATTAAGGTGTCCCCATTTATACAAGCTGCAACTGAACGGGAAAATTACAGCATTACCAGAAGAGCTCCGGGGCTATCCAAATCTCACCAAGATAAAGCTCACAAAAACAGAACTGAAGGGTGACCAGATTGAAATACTGGAGAAGCTGCCCAACTTAAGGGTGCTTTACCTCGGTGGGCATTCTTTCGAATCAGAAACAATGGTTTTCTCCCAAGGAGGCTTTCCTCATCTGGAATTTCTTACCCTTGGAGGTTTGGATGATTTGAAGGAGTGGAGGGTGGAGAAAGAAGCCATGCCTAGTCTTCAGAGATTGCGCATTGTATGGTGCTGGAGTTTGCGGACAGTTCCAGAGGGGCTTCAGGAGATTACTACCCTCAAGGAATTAACAATTGACGGGATGCTCAGTAGATTCTGCAGTAGGGTTGGGGAAGGAGGAGAGGATTTCTACAAAATCAAACATGTGCCTTCTCTTATAATCACAAATATTCATCATTGGGACGAGGAGCCAGAAATGGAGGAAGCAGCAGGTGCGTCCCAAGTACGTAGTAGGTACGGGTCCAGTCATCAGGAATTAACTGTGGATATATGGTATGTGACTAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001101 GO:0002230 GO:0002238 GO:0002239 GO:0002252 GO:0002376 GO:0002682 GO:0002697 GO:0002831 GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008219 GO:0009314 GO:0009416 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009615 GO:0009620 GO:0009626 GO:0009628 GO:0009637 GO:0009642 GO:0009646 GO:0009719 GO:0009725 GO:0009751 GO:0009987 GO:0010033 GO:0012501 GO:0014070 GO:0016020 GO:0023052 GO:0030054 GO:0031347 GO:0032101 GO:0032870 GO:0033554 GO:0034050 GO:0035690 GO:0036094 GO:0042221 GO:0042493 GO:0043207 GO:0043900 GO:0044464 GO:0045087 GO:0046677 GO:0048583 GO:0050688 GO:0050691 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051607 GO:0051704 GO:0051707 GO:0051716 GO:0055044 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071407 GO:0071446 GO:0071495 GO:0071944 GO:0080134 GO:0097159 GO:0098542 GO:1901265 GO:1901363 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NB-ARC

Protein Analysis

973

Amino Acids

111.19

Weight (kDa)

8.35

Isoelectric Point (pI)

47.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rx_N	PF18052	14 - 90	6e-19	Rx N-terminal domain
NB-ARC	PF00931	164 - 338	7.8e-42	NB-ARC domain
WHD_DRP	PF23559	435 - 510	1.6e-17	Disease resistance protein Winged helix domain
LRR_14	PF23598	586 - 904	1.1e-34	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000069)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10920 AT1G10920 AT1G10920 AT1G10920 AT1G10920 AT1G50180 AT1G53350 AT1G58390 AT1G58390 AT1G58400 AT1G58400 AT1G58400 AT1G58410 AT1G58410 AT1G58410 AT1G58410 AT1G58602 AT1G58602 AT1G58807 AT1G58807 AT1G58848 AT1G58848 AT1G59124 AT1G59124 AT1G59218 AT1G59218 AT1G59218 AT1G59620 AT1G59780 AT1G59780 AT5G35450 AT5G35450 AT5G43470 AT5G43470 AT5G43470 AT5G43470 AT5G48620 AT5G48620 AT5G48620 AT5G48620 AT5G48620 AT5G48620
fragaria_vesca	FvH4_4g04072 FvH4_4g22931 FvH4_4g22931 FvH4_4g22940 FvH4_6g49940 FvH4_6g49940 FvH4_7g08100 FvH4_7g08870 FvH4_7g08870 FvH4_7g09280 FvH4_7g09290 FvH4_7g15190 FvH4_7g15200 FvH4_7g15240 FvH4_7g15240 FvH4_7g33440
malus_domestica	MD00G1174600.v1.1 MD01G1113700.v1.1 MD03G1071300.v1.1 MD04G1041500.v1.1 MD04G1238000.v1.1 MD07G1029000.v1.1 MD07G1092100.v1.1 MD07G1092300.v1.1 MD07G1092600.v1.1 MD12G1256300.v1.1 MD13G1128200.v1.1 MD13G1128400.v1.1 MD17G1268000.v1.1
prunus_persica	Prupe.1G041300_v2.0.a1 Prupe.1G041300_v2.0.a1 Prupe.1G042900_v2.0.a1 Prupe.1G043100_v2.0.a1 Prupe.1G043100_v2.0.a1 Prupe.1G043100_v2.0.a1 Prupe.1G043100_v2.0.a1 Prupe.1G043600_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G046700_v2.0.a1 Prupe.1G047700_v2.0.a1 Prupe.1G047900_v2.0.a1 Prupe.1G048000_v2.0.a1 Prupe.1G048500_v2.0.a1 Prupe.1G048500_v2.0.a1 Prupe.1G049900_v2.0.a1 Prupe.1G051500_v2.0.a1 Prupe.1G051800_v2.0.a1 Prupe.1G051900_v2.0.a1 Prupe.1G052200_v2.0.a1 Prupe.1G194900_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217900_v2.0.a1 Prupe.1G217900_v2.0.a1 Prupe.1G217900_v2.0.a1 Prupe.1G217900_v2.0.a1 Prupe.1G217900_v2.0.a1 Prupe.2G117200_v2.0.a1 Prupe.2G117200_v2.0.a1 Prupe.2G117200_v2.0.a1 Prupe.2G117200_v2.0.a1 Prupe.2G117300_v2.0.a1 Prupe.2G117400_v2.0.a1 Prupe.2G117500_v2.0.a1 Prupe.2G117700_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G119900_v2.0.a1
pyrus_communis	pycom03g05750 pycom04g21110 pycom07g07530 pycom07g07590 pycom13g11110 pycom13g11140 pycom13g11160 pycom13g11170 pycom17g26680
rosa_chinensis	RchiOBHm_Chr1g0341231 RchiOBHm_Chr1g0344091 RchiOBHm_Chr1g0344161 RchiOBHm_Chr1g0345001 RchiOBHm_Chr1g0345351 RchiOBHm_Chr1g0345371 RchiOBHm_Chr1g0345391 RchiOBHm_Chr1g0345531 RchiOBHm_Chr1g0345551 RchiOBHm_Chr1g0345571 RchiOBHm_Chr1g0345581 RchiOBHm_Chr1g0345661 RchiOBHm_Chr1g0345691 RchiOBHm_Chr1g0345761 RchiOBHm_Chr1g0345791 RchiOBHm_Chr1g0345821 RchiOBHm_Chr1g0345911 RchiOBHm_Chr1g0345941 RchiOBHm_Chr1g0357611 RchiOBHm_Chr1g0357911 RchiOBHm_Chr1g0357921 RchiOBHm_Chr1g0357931 RchiOBHm_Chr1g0357971 RchiOBHm_Chr1g0358121 RchiOBHm_Chr1g0383491 RchiOBHm_Chr1g0383511 RchiOBHm_Chr1g0383521 RchiOBHm_Chr3g0480581 RchiOBHm_Chr4g0394341 RchiOBHm_Chr4g0394361 RchiOBHm_Chr4g0394411 RchiOBHm_Chr4g0394441 RchiOBHm_Chr4g0407681 RchiOBHm_Chr4g0429191 RchiOBHm_Chr4g0429201 RchiOBHm_Chr4g0429211 RchiOBHm_Chr4g0429221 RchiOBHm_Chr6g0265091
rosa_laevigata	RLG00000007088 RLG00000008700 RLG00000009190 RLG00000009702 RLG00000014210 RLG00000028829 RLG00000028833 RLG00000028837 RLG00000028838 RLG00000028921 RLG00000028926
rosa_multiflora	Rmu_co8366955.1_g000001 Rmu_co8394205.1_g000001 Rmu_sc0000019.1_g000001 Rmu_sc0000054.1_g000031 Rmu_sc0000054.1_g000033 Rmu_sc0000200.1_g000002 Rmu_sc0000200.1_g000007 Rmu_sc0000200.1_g000018 Rmu_sc0000200.1_g000020 Rmu_sc0000200.1_g000021 Rmu_sc0000251.1_g000012 Rmu_sc0000251.1_g000015 Rmu_sc0000251.1_g000028 Rmu_sc0000253.1_g000015 Rmu_sc0000255.1_g000045 Rmu_sc0000255.1_g000046 Rmu_sc0001292.1_g000013 Rmu_sc0001292.1_g000018 Rmu_sc0001292.1_g000028 Rmu_sc0001292.1_g000029 Rmu_sc0001349.1_g000006 Rmu_sc0001349.1_g000014 Rmu_sc0001582.1_g000006 Rmu_sc0001582.1_g000018 Rmu_sc0001582.1_g000020 Rmu_sc0001692.1_g000007 Rmu_sc0001692.1_g000024 Rmu_sc0001692.1_g000026 Rmu_sc0001692.1_g000029 Rmu_sc0001692.1_g000030 Rmu_sc0001835.1_g000006 Rmu_sc0001835.1_g000010 Rmu_sc0002071.1_g000005 Rmu_sc0002276.1_g000002 Rmu_sc0002276.1_g000009 Rmu_sc0002329.1_g000018 Rmu_sc0002329.1_g000023 Rmu_sc0002329.1_g000025 Rmu_sc0002523.1_g000005 Rmu_sc0003573.1_g000005 Rmu_sc0003573.1_g000006 Rmu_sc0004099.1_g000021 Rmu_sc0005812.1_g000009 Rmu_sc0006271.1_g000002 Rmu_sc0006287.1_g000038 Rmu_sc0006439.1_g000008 Rmu_sc0007456.1_g000004 Rmu_sc0007581.1_g000009 Rmu_sc0007849.1_g000014 Rmu_sc0008115.1_g000012 Rmu_sc0010521.1_g000004 Rmu_sc0012471.1_g000017 Rmu_sc0014762.1_g000001 Rmu_sc0015150.1_g000003 Rmu_sc0017221.1_g000001 Rmu_sc0017299.1_g000001 Rmu_sc0017299.1_g000002 Rmu_sc0021457.1_g000001 Rmu_sc0022067.1_g000001 Rmu_sc0033275.1_g000001 Rmu_ssc0000245.1_g000012 Rmu_ssc0000359.1_g000035 Rmu_ssc0000359.1_g000067 Rmu_ssc0000359.1_g000072 Rmu_ssc0000434.1_g000005 Rmu_ssc0000434.1_g000007
rosa_roxburghii	Rroxscaffold_4G00298420 Rroxscaffold_4G00298720 Rroxscaffold_4G00308990 Rroxscaffold_4G00309000 Rroxscaffold_4G00309010 Rroxscaffold_4G00309050 Rroxscaffold_4G00309070 Rroxscaffold_4G00309100 Rroxscaffold_4G00310030 Rroxscaffold_4G00310050 Rroxscaffold_4G00311880 Rroxscaffold_5G00339420 Rroxscaffold_5G00339450 Rroxscaffold_5G00344880 Rroxscaffold_5G00352270 Rroxscaffold_5G00362240 Rroxscaffold_5G00370840 Rroxscaffold_7G00202970
rosa_rugosa	Rorug01G0159100.1 Rorug01G0159200.1 Rorug01G0171700 Rorug01G0171900 Rorug01G0172000 Rorug01G0191700 Rorug01G0191800 Rorug01G0256900 Rorug01G0257000 Rorug01G0257100 Rorug03G0198000 Rorug03G0366300.1 Rorug03G0366400.1 Rorug03G0366500.1 Rorug04G0081200 Rorug04G0081200 Rorug04G0081200 Rorug04G0233700 Rorug04G0233800 Rorug04G0233800 Rorug06G0013300
rosa_samantha	Rh1CG138800 Rh1CG161300 Rh1CG173800 Rh1CG179800 Rh1CG180100 Rh1CG180500 Rh1CG180800 Rh1CG180900 Rh1CG194100 Rh1DG205100 Rh3AG236300 Rh4AG052000 Rh4AG052100 Rh4AG145900 Rh4AG289700 Rh4AG289800 Rh6AG136800 Rh6AG137300 Rh6BG133600 Rh6CG132000 Rh6CG134000 Rh6DG119300
rosa_wichuraiana	Rw0G003420 Rw1G015500 Rw1G016110 Rw1G016180 Rw1G016210 Rw1G016230 Rw1G016280 Rw1G016440 Rw1G016450 Rw1G016460 Rw1G016480 Rw1G017490 Rw1G024140 Rw1G024160 Rw3G022530 Rw4G004140 Rw4G004190 Rw4G011850 Rw6G011800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	408, 2792
AarI	CACCTGC	1 cut(s)	2834
Acc16I	TGCGCA	2 cut(s)	2099, 2633
Acc36I	ACCTGC	1 cut(s)	2834
Acc65I	GGTACC	1 cut(s)	278
AccB1I	GGYRCC	1 cut(s)	278
AccI	GTMKAC	3 cut(s)	1120, 1170, 1704
AciI	CCGC	3 cut(s)	5, 567, 2656
AclWI	GGATC	4 cut(s)	419, 802, 1320, 1994
AcoI	YGGCCR	1 cut(s)	1684
AcsI	RAATTY	2 cut(s)	74, 2552
AcuI	CTGAAG	4 cut(s)	1889, 2453, 2606, 2660
AfaI	GTAC	8 cut(s)	183, 280, 1024, 1068, 1152, 1917, 2859, 2870
AfiI	CCNNNNNNNGG	1 cut(s)	2475
AflII	CTTAAG	1 cut(s)	2473
AflIII	ACRYGT	2 cut(s)	2008, 2776
AgeI	ACCGGT	1 cut(s)	1324
AhdI	GACNNNNNGTC	1 cut(s)	774
AjnI	CCWGG	2 cut(s)	263, 853
AjuI	GAANNNNNNNTTGG	2 cut(s)	2523, 2555
AluBI	AGCT	8 cut(s)	106, 121, 517, 981, 2344, 2383, 2416, 2464
AluI	AGCT	8 cut(s)	106, 121, 517, 981, 2344, 2383, 2416, 2464
Alw21I	GWGCWC	3 cut(s)	1104, 2061, 2385
Alw26I	GTCTC	7 cut(s)	45, 162, 1085, 1121, 1508, 1701, 2289
AlwI	GGATC	4 cut(s)	419, 802, 1320, 1994
AoxI	GGCC	1 cut(s)	1684
ApeKI	GCWGC	4 cut(s)	2095, 2344, 2464, 2840
ApoI	RAATTY	2 cut(s)	74, 2552
ArsI	GACNNNNNNTTYG	2 cut(s)	1198, 1230
AsiGI	ACCGGT	1 cut(s)	1324
Asp700I	GAANNNNTTC	1 cut(s)	990
Asp718I	GGTACC	1 cut(s)	278
AspLEI	GCGC	3 cut(s)	537, 2100, 2634
AspS9I	GGNCC	3 cut(s)	598, 1583, 2874
AsuC2I	CCSGG	1 cut(s)	2387
AsuHPI	GGTGA	7 cut(s)	205, 520, 817, 889, 1501, 2395, 2450
AsuII	TTCGAA	3 cut(s)	1618, 2018, 2505
AvaII	GGWCC	3 cut(s)	598, 1583, 2874
AxyI	CCTNAGG	1 cut(s)	1308
BalI	TGGCCA	1 cut(s)	1686
BanI	GGYRCC	1 cut(s)	278
BanII	GRGCYC	1 cut(s)	2385
BarI	GAAGNNNNNNTAC	2 cut(s)	1006, 1038
BauI	CACGAG	2 cut(s)	830, 2286
BbsI	GAAGAC	5 cut(s)	307, 1046, 1103, 1627, 2612
Bbv12I	GWGCWC	3 cut(s)	1104, 2061, 2385
BbvI	GCAGC	4 cut(s)	2082, 2331, 2451, 2852
BccI	CCATC	9 cut(s)	556, 609, 626, 739, 1100, 1273, 1667, 1676, 1903
BciT130I	CCWGG	2 cut(s)	265, 855
BciVI	GTATCC	1 cut(s)	791
BclI	TGATCA	1 cut(s)	201
BcnI	CCSGG	1 cut(s)	2387
BcoDI	GTCTC	7 cut(s)	45, 162, 1085, 1121, 1508, 1701, 2289
BfaI	CTAG	8 cut(s)	518, 965, 1700, 1844, 1931, 2180, 2202, 2616
BfmI	CTRYAG	1 cut(s)	2731
BfoI	RGCGCY	1 cut(s)	538
BfrI	CTTAAG	1 cut(s)	2473
BfuAI	ACCTGC	1 cut(s)	2834
BfuI	GTATCC	1 cut(s)	791
BglII	AGATCT	2 cut(s)	1448, 1933
BisI	GCNGC	5 cut(s)	568, 2096, 2345, 2465, 2841
BlsI	GCNGC	5 cut(s)	569, 2097, 2346, 2466, 2842
BmcAI	AGTACT	1 cut(s)	1152
Bme1390I	CCNGG	3 cut(s)	265, 855, 2387
Bme18I	GGWCC	3 cut(s)	598, 1583, 2874
BmeRI	GACNNNNNGTC	1 cut(s)	774
BmgT120I	GGNCC	3 cut(s)	598, 1583, 2874
BmiI	GGNNCC	3 cut(s)	280, 2823, 2875
BmrFI	CCNGG	3 cut(s)	265, 855, 2387
BmsI	GCATC	5 cut(s)	139, 938, 2201, 2266, 2706
BpiI	GAAGAC	5 cut(s)	307, 1046, 1103, 1627, 2612
BplI	GAGNNNNNCTC	2 cut(s)	2269, 2301
BpmI	CTGGAG	3 cut(s)	186, 2477, 2668
Bpu10I	CCTNAGC	1 cut(s)	1075
Bpu14I	TTCGAA	3 cut(s)	1618, 2018, 2505
BpuEI	CTTGAG	3 cut(s)	100, 1873, 2678
BpuMI	CCSGG	1 cut(s)	2387
BsaAI	YACGTR	1 cut(s)	2861
BsaI	GGTCTC	2 cut(s)	1085, 1701
BsaJI	CCNNGG	5 cut(s)	46, 2386, 2488, 2530, 2563
BsaWI	WCCGGW	3 cut(s)	862, 1324, 1585
BsaXI	ACNNNNNCTCC	4 cut(s)	1614, 1644, 1805, 1835
Bsc4I	CCNNNNNNNGG	1 cut(s)	2475
Bse118I	RCCGGY	1 cut(s)	1324
Bse1I	ACTGG	4 cut(s)	169, 1443, 2460, 2877
Bse21I	CCTNAGG	1 cut(s)	1308
Bse3DI	GCAATG	1 cut(s)	1069
BseBI	CCWGG	2 cut(s)	265, 855
BseDI	CCNNGG	5 cut(s)	46, 2386, 2488, 2530, 2563
BseGI	GGATG	7 cut(s)	235, 567, 929, 1678, 1998, 2581, 2721
BseLI	CCNNNNNNNGG	1 cut(s)	2475
BseMI	GCAATG	1 cut(s)	1069
BseMII	CTCAG	6 cut(s)	431, 1089, 1299, 2024, 2046, 2734
BseNI	ACTGG	4 cut(s)	169, 1443, 2460, 2877
BseRI	GAGGAG	5 cut(s)	288, 420, 1562, 2766, 2834
BseXI	GCAGC	4 cut(s)	2082, 2331, 2451, 2852
BseYI	CCCAGC	1 cut(s)	981
Bsh1285I	CGRYCG	1 cut(s)	2267
BshFI	GGCC	1 cut(s)	1686
BshNI	GGYRCC	1 cut(s)	278
BshTI	ACCGGT	1 cut(s)	1324
BsiEI	CGRYCG	1 cut(s)	2267
BsiHKAI	GWGCWC	3 cut(s)	1104, 2061, 2385
BsiSI	CCGG	5 cut(s)	863, 886, 1325, 1586, 2386
BslFI	GGGAC	4 cut(s)	694, 2313, 2828, 2836
BslI	CCNNNNNNNGG	1 cut(s)	2475
BsmAI	GTCTC	7 cut(s)	45, 162, 1085, 1121, 1508, 1701, 2289
BsmBI	CGTCTC	2 cut(s)	162, 1508
BsmFI	GGGAC	4 cut(s)	694, 2313, 2828, 2836
BsmI	GAATGC	2 cut(s)	841, 2497
BsnI	GGCC	1 cut(s)	1686
Bso31I	GGTCTC	2 cut(s)	1085, 1701
Bsp119I	TTCGAA	3 cut(s)	1618, 2018, 2505
Bsp1286I	GDGCHC	3 cut(s)	1104, 2061, 2385
BspACI	CCGC	3 cut(s)	5, 567, 2656
BspANI	GGCC	1 cut(s)	1686
BspCNI	CTCAG	6 cut(s)	432, 1088, 1300, 2025, 2047, 2733
BspHI	TCATGA	2 cut(s)	457, 1315
BspLI	GGNNCC	3 cut(s)	280, 2823, 2875
BspMAI	CTGCAG	1 cut(s)	2735
BspMI	ACCTGC	1 cut(s)	2834
BspPI	GGATC	4 cut(s)	419, 802, 1320, 1994
BspQI	GCTCTTC	2 cut(s)	714, 2373
BspT104I	TTCGAA	3 cut(s)	1618, 2018, 2505
BspT107I	GGYRCC	1 cut(s)	278
BspTI	CTTAAG	1 cut(s)	2473
BspTNI	GGTCTC	2 cut(s)	1085, 1701
BsrDI	GCAATG	1 cut(s)	1069
BsrFI	RCCGGY	1 cut(s)	1324
BsrI	ACTGG	4 cut(s)	169, 1443, 2460, 2877
BssAI	RCCGGY	1 cut(s)	1324
BssECI	CCNNGG	5 cut(s)	46, 2386, 2488, 2530, 2563
BssNAI	GTATAC	2 cut(s)	1171, 1705
BssSI	CACGAG	2 cut(s)	830, 2286
BssT1I	CCWWGG	2 cut(s)	2530, 2563
Bst1107I	GTATAC	2 cut(s)	1171, 1705
Bst2BI	CACGAG	2 cut(s)	830, 2286
Bst2UI	CCWGG	2 cut(s)	265, 855
Bst4CI	ACNGT	7 cut(s)	542, 990, 1022, 1150, 2082, 2662, 2896
Bst6I	CTCTTC	4 cut(s)	667, 714, 1672, 2373
BstAFI	CTTAAG	1 cut(s)	2473
BstAPI	GCANNNNNTGC	3 cut(s)	1886, 2113, 2846
BstBAI	YACGTR	1 cut(s)	2861
BstBI	TTCGAA	3 cut(s)	1618, 2018, 2505
BstC8I	GCNNGC	5 cut(s)	108, 310, 927, 1104, 1532
BstDEI	CTNAG	9 cut(s)	440, 1075, 1115, 1154, 1308, 1781, 2033, 2055, 2720
BstEII	GGTNACC	1 cut(s)	2438
BstF5I	GGATG	7 cut(s)	235, 567, 929, 1678, 1998, 2581, 2721
BstH2I	RGCGCY	1 cut(s)	538
BstHHI	GCGC	3 cut(s)	537, 2100, 2634
BstMAI	GTCTC	7 cut(s)	45, 162, 1085, 1121, 1508, 1701, 2289
BstMCI	CGRYCG	1 cut(s)	2267
BstMWI	GCNNNNNNNGC	6 cut(s)	926, 1886, 2035, 2104, 2113, 2846
BstNI	CCWGG	2 cut(s)	265, 855
BstNSI	RCATGY	2 cut(s)	2012, 2780
BstPI	GGTNACC	1 cut(s)	2438
BstSCI	CCNGG	3 cut(s)	263, 853, 2385
BstSFI	CTRYAG	1 cut(s)	2731
BstSNI	TACGTA	1 cut(s)	2861
BstV1I	GCAGC	4 cut(s)	2082, 2331, 2451, 2852
BstV2I	GAAGAC	5 cut(s)	307, 1046, 1103, 1627, 2612
BstX2I	RGATCY	2 cut(s)	1448, 1933
BstYI	RGATCY	2 cut(s)	1448, 1933
BstZ17I	GTATAC	2 cut(s)	1171, 1705
Bsu36I	CCTNAGG	1 cut(s)	1308
BsuI	GTATCC	1 cut(s)	791
BsuRI	GGCC	1 cut(s)	1686
BtsCI	GGATG	7 cut(s)	235, 567, 929, 1678, 1998, 2581, 2721
BtsIMutI	CAGTG	2 cut(s)	1601, 1669
BveI	ACCTGC	1 cut(s)	2834
Cac8I	GCNNGC	5 cut(s)	108, 310, 927, 1104, 1532
CciI	TCATGA	2 cut(s)	457, 1315
CfoI	GCGC	3 cut(s)	537, 2100, 2634
Cfr10I	RCCGGY	1 cut(s)	1324
Cfr13I	GGNCC	3 cut(s)	598, 1583, 2874
CseI	GACGC	3 cut(s)	301, 611, 2838
Csp6I	GTAC	8 cut(s)	182, 279, 1023, 1067, 1151, 1916, 2858, 2869
CspAI	ACCGGT	1 cut(s)	1324
CviAII	CATG	9 cut(s)	283, 458, 706, 837, 1316, 1508, 2009, 2611, 2777
CviQI	GTAC	8 cut(s)	182, 279, 1023, 1067, 1151, 1916, 2858, 2869
DdeI	CTNAG	9 cut(s)	440, 1075, 1115, 1154, 1308, 1781, 2033, 2055, 2720
DraI	TTTAAA	1 cut(s)	849
DriI	GACNNNNNGTC	1 cut(s)	774
EaeI	YGGCCR	1 cut(s)	1684
Eam1104I	CTCTTC	4 cut(s)	667, 714, 1672, 2373
Eam1105I	GACNNNNNGTC	1 cut(s)	774
EarI	CTCTTC	4 cut(s)	667, 714, 1672, 2373
EciI	GGCGGA	1 cut(s)	20
Ecl136II	GAGCTC	1 cut(s)	2383
Eco105I	TACGTA	1 cut(s)	2861
Eco130I	CCWWGG	2 cut(s)	2530, 2563
Eco24I	GRGCYC	1 cut(s)	2385
Eco31I	GGTCTC	2 cut(s)	1085, 1701
Eco47I	GGWCC	3 cut(s)	598, 1583, 2874
Eco53kI	GAGCTC	1 cut(s)	2383
Eco57I	CTGAAG	4 cut(s)	1889, 2453, 2606, 2660
Eco81I	CCTNAGG	1 cut(s)	1308
Eco91I	GGTNACC	1 cut(s)	2438
EcoICRI	GAGCTC	1 cut(s)	2383
EcoO65I	GGTNACC	1 cut(s)	2438
EcoRII	CCWGG	2 cut(s)	263, 853
EcoT14I	CCWWGG	2 cut(s)	2530, 2563
EcoT38I	GRGCYC	1 cut(s)	2385
ErhI	CCWWGG	2 cut(s)	2530, 2563
Esp3I	CGTCTC	2 cut(s)	162, 1508
FaeI	CATG	9 cut(s)	286, 461, 709, 840, 1319, 1511, 2012, 2614, 2780
FalI	AAGNNNNNCTT	2 cut(s)	90, 122
FaqI	GGGAC	4 cut(s)	694, 2313, 2828, 2836
FatI	CATG	9 cut(s)	282, 457, 705, 836, 1315, 1507, 2008, 2610, 2776
FauNDI	CATATG	2 cut(s)	1420, 2251
FbaI	TGATCA	1 cut(s)	201
FblI	GTMKAC	3 cut(s)	1120, 1170, 1704
Fnu4HI	GCNGC	5 cut(s)	568, 2096, 2345, 2465, 2841
FokI	GGATG	7 cut(s)	242, 574, 916, 1685, 2005, 2588, 2728
FriOI	GRGCYC	1 cut(s)	2385
Fsp4HI	GCNGC	5 cut(s)	568, 2096, 2345, 2465, 2841
FspBI	CTAG	8 cut(s)	518, 965, 1700, 1844, 1931, 2180, 2202, 2616
FspI	TGCGCA	2 cut(s)	2099, 2633
GlaI	GCGC	3 cut(s)	536, 2099, 2633
GluI	GCNGC	5 cut(s)	568, 2096, 2345, 2465, 2841
GsaI	CCCAGC	1 cut(s)	985
GsuI	CTGGAG	3 cut(s)	186, 2477, 2668
HaeII	RGCGCY	1 cut(s)	538
HaeIII	GGCC	1 cut(s)	1686
HapII	CCGG	5 cut(s)	863, 886, 1325, 1586, 2386
HgaI	GACGC	3 cut(s)	301, 611, 2838
HhaI	GCGC	3 cut(s)	537, 2100, 2634
Hin1II	CATG	9 cut(s)	286, 461, 709, 840, 1319, 1511, 2012, 2614, 2780
Hin6I	GCGC	3 cut(s)	535, 2098, 2632
HinP1I	GCGC	3 cut(s)	535, 2098, 2632
HincII	GTYRAC	2 cut(s)	1570, 2163
HindII	GTYRAC	2 cut(s)	1570, 2163
HpaI	GTTAAC	2 cut(s)	1570, 2163
HpaII	CCGG	5 cut(s)	863, 886, 1325, 1586, 2386
HphI	GGTGA	7 cut(s)	205, 520, 817, 889, 1501, 2395, 2450
Hpy166II	GTNNAC	7 cut(s)	1121, 1171, 1468, 1570, 1705, 1849, 2163
Hpy8I	GTNNAC	7 cut(s)	1121, 1171, 1468, 1570, 1705, 1849, 2163
Hpy99I	CGWCG	1 cut(s)	1643
HpyCH4III	ACNGT	7 cut(s)	542, 990, 1022, 1150, 2082, 2662, 2896
HpyCH4IV	ACGT	2 cut(s)	2111, 2860
HpyF10VI	GCNNNNNNNGC	6 cut(s)	926, 1886, 2035, 2104, 2113, 2846
HpyF3I	CTNAG	9 cut(s)	440, 1075, 1115, 1154, 1308, 1781, 2033, 2055, 2720
HpySE526I	ACGT	2 cut(s)	2111, 2860
Hsp92II	CATG	9 cut(s)	286, 461, 709, 840, 1319, 1511, 2012, 2614, 2780
HspAI	GCGC	3 cut(s)	535, 2098, 2632
KpnI	GGTACC	1 cut(s)	282
Ksp22I	TGATCA	1 cut(s)	201
KspAI	GTTAAC	2 cut(s)	1570, 2163
LguI	GCTCTTC	2 cut(s)	714, 2373
LmnI	GCTCC	4 cut(s)	514, 2026, 2388, 2821
Lsp1109I	GCAGC	4 cut(s)	2082, 2331, 2451, 2852
LweI	GCATC	5 cut(s)	139, 938, 2201, 2266, 2706
MaeI	CTAG	8 cut(s)	518, 965, 1700, 1844, 1931, 2180, 2202, 2616
MaeII	ACGT	2 cut(s)	2111, 2860
MaeIII	GTNAC	5 cut(s)	335, 1821, 2204, 2438, 2911
MfeI	CAATTG	2 cut(s)	21, 2706
MflI	RGATCY	2 cut(s)	1448, 1933
MhlI	GDGCHC	3 cut(s)	1104, 2061, 2385
MlsI	TGGCCA	1 cut(s)	1686
MluNI	TGGCCA	1 cut(s)	1686
MlyI	GAGTC	6 cut(s)	763, 820, 1333, 1794, 1858, 1921
MmeI	TCCRAC	1 cut(s)	663
Mox20I	TGGCCA	1 cut(s)	1686
MroXI	GAANNNNTTC	1 cut(s)	990
MscI	TGGCCA	1 cut(s)	1686
MslI	CAYNNNNRTG	4 cut(s)	191, 506, 630, 1097
Msp20I	TGGCCA	1 cut(s)	1686
MspCI	CTTAAG	1 cut(s)	2473
MspI	CCGG	5 cut(s)	863, 886, 1325, 1586, 2386
MspR9I	CCNGG	3 cut(s)	265, 855, 2387
MunI	CAATTG	2 cut(s)	21, 2706
Mva1269I	GAATGC	2 cut(s)	841, 2497
MvaI	CCWGG	2 cut(s)	265, 855
MwoI	GCNNNNNNNGC	6 cut(s)	926, 1886, 2035, 2104, 2113, 2846
NciI	CCSGG	1 cut(s)	2387
NdeI	CATATG	2 cut(s)	1420, 2251
NlaIII	CATG	9 cut(s)	286, 461, 709, 840, 1319, 1511, 2012, 2614, 2780
NlaIV	GGNNCC	3 cut(s)	280, 2823, 2875
NmuCI	GTSAC	4 cut(s)	335, 2204, 2438, 2911
NsbI	TGCGCA	2 cut(s)	2099, 2633
NspI	RCATGY	2 cut(s)	2012, 2780
NspV	TTCGAA	3 cut(s)	1618, 2018, 2505
PagI	TCATGA	2 cut(s)	457, 1315
PaqCI	CACCTGC	1 cut(s)	2834
PciI	ACATGT	2 cut(s)	2008, 2776
PciSI	GCTCTTC	2 cut(s)	714, 2373
PctI	GAATGC	2 cut(s)	841, 2497
PdmI	GAANNNNTTC	1 cut(s)	990
PfeI	GAWTC	7 cut(s)	36, 155, 239, 1719, 1840, 2507, 2727
PfoI	TCCNGGA	1 cut(s)	263
PinAI	ACCGGT	1 cut(s)	1324
PkrI	GCNGC	5 cut(s)	569, 2097, 2346, 2466, 2842
PleI	GAGTC	6 cut(s)	763, 820, 1333, 1793, 1858, 1921
PpsI	GAGTC	6 cut(s)	763, 820, 1333, 1793, 1858, 1921
Ppu21I	YACGTR	1 cut(s)	2861
PscI	ACATGT	2 cut(s)	2008, 2776
PsiI	TTATAA	2 cut(s)	408, 2792
Psp124BI	GAGCTC	1 cut(s)	2385
Psp6I	CCWGG	2 cut(s)	263, 853
PspEI	GGTNACC	1 cut(s)	2438
PspFI	CCCAGC	1 cut(s)	981
PspGI	CCWGG	2 cut(s)	263, 853
PspN4I	GGNNCC	3 cut(s)	280, 2823, 2875
PspPI	GGNCC	3 cut(s)	598, 1583, 2874
PstI	CTGCAG	1 cut(s)	2735
PsuI	RGATCY	2 cut(s)	1448, 1933
RsaI	GTAC	8 cut(s)	183, 280, 1024, 1068, 1152, 1917, 2859, 2870
RsaNI	GTAC	8 cut(s)	182, 279, 1023, 1067, 1151, 1916, 2858, 2869
RseI	CAYNNNNRTG	4 cut(s)	191, 506, 630, 1097
SacI	GAGCTC	1 cut(s)	2385
SapI	GCTCTTC	2 cut(s)	714, 2373
SatI	GCNGC	5 cut(s)	568, 2096, 2345, 2465, 2841
Sau96I	GGNCC	3 cut(s)	598, 1583, 2874
ScaI	AGTACT	1 cut(s)	1152
SchI	GAGTC	6 cut(s)	763, 820, 1333, 1794, 1858, 1921
ScrFI	CCNGG	3 cut(s)	265, 855, 2387
SduI	GDGCHC	3 cut(s)	1104, 2061, 2385
SfaNI	GCATC	5 cut(s)	139, 938, 2201, 2266, 2706
SfcI	CTRYAG	1 cut(s)	2731
SfuI	TTCGAA	3 cut(s)	1618, 2018, 2505
SinI	GGWCC	3 cut(s)	598, 1583, 2874
SmiMI	CAYNNNNRTG	4 cut(s)	191, 506, 630, 1097
SmlI	CTYRAG	4 cut(s)	79, 1852, 2473, 2693
SmoI	CTYRAG	4 cut(s)	79, 1852, 2473, 2693
SnaBI	TACGTA	1 cut(s)	2861
SsiI	CCGC	3 cut(s)	5, 567, 2656
SspI	AATATT	2 cut(s)	1761, 2803
SspMI	CTAG	8 cut(s)	518, 965, 1700, 1844, 1931, 2180, 2202, 2616
SstI	GAGCTC	1 cut(s)	2385
StyD4I	CCNGG	3 cut(s)	263, 853, 2385
StyI	CCWWGG	2 cut(s)	2530, 2563
TaaI	ACNGT	7 cut(s)	542, 990, 1022, 1150, 2082, 2662, 2896
TaiI	ACGT	2 cut(s)	2114, 2863
TaqI	TCGA	8 cut(s)	117, 958, 1618, 1638, 1725, 2018, 2130, 2505
TaqII	GACCGA	1 cut(s)	2253
TatI	WGTACW	2 cut(s)	1022, 1150
TauI	GCSGC	1 cut(s)	570
TfiI	GAWTC	7 cut(s)	36, 155, 239, 1719, 1840, 2507, 2727
TscAI	CASTG	2 cut(s)	1608, 1669
TseFI	GTSAC	4 cut(s)	335, 2204, 2438, 2911
TseI	GCWGC	4 cut(s)	2095, 2344, 2464, 2840
Tsp45I	GTSAC	4 cut(s)	335, 2204, 2438, 2911
TspDTI	ATGAA	8 cut(s)	189, 299, 336, 474, 627, 771, 984, 2795
TspRI	CASTG	2 cut(s)	1608, 1669
Vha464I	CTTAAG	1 cut(s)	2473
VpaK11BI	GGWCC	3 cut(s)	598, 1583, 2874
XapI	RAATTY	2 cut(s)	74, 2552
XbaI	TCTAGA	2 cut(s)	964, 1930
XceI	RCATGY	2 cut(s)	2012, 2780
XmiI	GTMKAC	3 cut(s)	1120, 1170, 1704
XmnI	GAANNNNTTC	1 cut(s)	990
XspI	CTAG	8 cut(s)	518, 965, 1700, 1844, 1931, 2180, 2202, 2616
ZrmI	AGTACT	1 cut(s)	1152

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.