MD17G1268000.v1.1

disease resistance

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
Physical Location & Seq
Forward (+)
32793219 .. 32795106
1888 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1268000.v1.1.491

Sequence Viewer

Length: 531 bp
ATGATAGTGTCAAGTTGTCGTCAGATATGCAAGTTGTGTCTGCAAGGGCTAACCACAGAGCTACCAAATGACCTCCAGTACTATCCAAACCTCATCAAGTTATCATTAATTGAAACTGATCTCAAGGAAGACCAGATTACAATTCTGGAGAGGCTGAAAAACTTAAGAGTTCTACACCTTAGCTGGAGTGCTTTTGAGAAGAACTCAAAGACATTGAAATTCTCTGCTGGAGGCTTTCCTCGTCTTGAATTTCTTTCACTTTCCTGCATGGACGAAATAGAGGAGTGGATGGTGGATGAAGGAGCCATGCCTTGTCTTCGCCAATTGTATATTGAGCACTGTGGAGGCATGAAGACAGTTCCCGATTGGCTGAGGTACATTACAACCCTCAGGGAATTAGCCATCACTGGGATGTCAAAAGCATTCTACAGTAGACTTGAGAAAGGAGGAGCAGACTTCTACAAAATCCAACATGTGCCTTCCCTTGATTTTGGGCCAGCCATTGAGGAGTTTCTCTCATCACGTACATAA

Protein Analysis

177

Amino Acids

20.22

Weight (kDa)

5.67

Isoelectric Point (pI)

59.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 5 - 112 7.4e-12 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000069)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G10920 AT1G10920 AT1G10920 AT1G10920 AT1G10920 AT1G50180 AT1G53350 AT1G58390 AT1G58390 AT1G58400 AT1G58400 AT1G58400 AT1G58410 AT1G58410 AT1G58410 AT1G58410 AT1G58602 AT1G58602 AT1G58807 AT1G58807 AT1G58848 AT1G58848 AT1G59124 AT1G59124 AT1G59218 AT1G59218 AT1G59218 AT1G59620 AT1G59780 AT1G59780 AT5G35450 AT5G35450 AT5G43470 AT5G43470 AT5G43470 AT5G43470 AT5G48620 AT5G48620 AT5G48620 AT5G48620 AT5G48620 AT5G48620
fragaria_vesca FvH4_4g04072 FvH4_4g22931 FvH4_4g22931 FvH4_4g22940 FvH4_6g49940 FvH4_6g49940 FvH4_7g08100 FvH4_7g08870 FvH4_7g08870 FvH4_7g09280 FvH4_7g09290 FvH4_7g15190 FvH4_7g15200 FvH4_7g15240 FvH4_7g15240 FvH4_7g33440
malus_domestica MD00G1174600.v1.1 MD01G1113700.v1.1 MD03G1071300.v1.1 MD04G1041500.v1.1 MD04G1238000.v1.1 MD07G1029000.v1.1 MD07G1092100.v1.1 MD07G1092300.v1.1 MD07G1092600.v1.1 MD12G1256300.v1.1 MD13G1128200.v1.1 MD13G1128400.v1.1 MD17G1268000.v1.1
prunus_persica Prupe.1G041300_v2.0.a1 Prupe.1G041300_v2.0.a1 Prupe.1G042900_v2.0.a1 Prupe.1G043100_v2.0.a1 Prupe.1G043100_v2.0.a1 Prupe.1G043100_v2.0.a1 Prupe.1G043100_v2.0.a1 Prupe.1G043600_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G046700_v2.0.a1 Prupe.1G047700_v2.0.a1 Prupe.1G047900_v2.0.a1 Prupe.1G048000_v2.0.a1 Prupe.1G048500_v2.0.a1 Prupe.1G048500_v2.0.a1 Prupe.1G049900_v2.0.a1 Prupe.1G051500_v2.0.a1 Prupe.1G051800_v2.0.a1 Prupe.1G051900_v2.0.a1 Prupe.1G052200_v2.0.a1 Prupe.1G194900_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217900_v2.0.a1 Prupe.1G217900_v2.0.a1 Prupe.1G217900_v2.0.a1 Prupe.1G217900_v2.0.a1 Prupe.1G217900_v2.0.a1 Prupe.2G117200_v2.0.a1 Prupe.2G117200_v2.0.a1 Prupe.2G117200_v2.0.a1 Prupe.2G117200_v2.0.a1 Prupe.2G117300_v2.0.a1 Prupe.2G117400_v2.0.a1 Prupe.2G117500_v2.0.a1 Prupe.2G117700_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G119900_v2.0.a1
pyrus_communis pycom03g05750 pycom04g21110 pycom07g07530 pycom07g07590 pycom13g11110 pycom13g11140 pycom13g11160 pycom13g11170 pycom17g26680
rosa_chinensis RchiOBHm_Chr1g0341231 RchiOBHm_Chr1g0344091 RchiOBHm_Chr1g0344161 RchiOBHm_Chr1g0345001 RchiOBHm_Chr1g0345351 RchiOBHm_Chr1g0345371 RchiOBHm_Chr1g0345391 RchiOBHm_Chr1g0345531 RchiOBHm_Chr1g0345551 RchiOBHm_Chr1g0345571 RchiOBHm_Chr1g0345581 RchiOBHm_Chr1g0345661 RchiOBHm_Chr1g0345691 RchiOBHm_Chr1g0345761 RchiOBHm_Chr1g0345791 RchiOBHm_Chr1g0345821 RchiOBHm_Chr1g0345911 RchiOBHm_Chr1g0345941 RchiOBHm_Chr1g0357611 RchiOBHm_Chr1g0357911 RchiOBHm_Chr1g0357921 RchiOBHm_Chr1g0357931 RchiOBHm_Chr1g0357971 RchiOBHm_Chr1g0358121 RchiOBHm_Chr1g0383491 RchiOBHm_Chr1g0383511 RchiOBHm_Chr1g0383521 RchiOBHm_Chr3g0480581 RchiOBHm_Chr4g0394341 RchiOBHm_Chr4g0394361 RchiOBHm_Chr4g0394411 RchiOBHm_Chr4g0394441 RchiOBHm_Chr4g0407681 RchiOBHm_Chr4g0429191 RchiOBHm_Chr4g0429201 RchiOBHm_Chr4g0429211 RchiOBHm_Chr4g0429221 RchiOBHm_Chr6g0265091
rosa_laevigata RLG00000007088 RLG00000008700 RLG00000009190 RLG00000009702 RLG00000014210 RLG00000028829 RLG00000028833 RLG00000028837 RLG00000028838 RLG00000028921 RLG00000028926
rosa_multiflora Rmu_co8366955.1_g000001 Rmu_co8394205.1_g000001 Rmu_sc0000019.1_g000001 Rmu_sc0000054.1_g000031 Rmu_sc0000054.1_g000033 Rmu_sc0000200.1_g000002 Rmu_sc0000200.1_g000007 Rmu_sc0000200.1_g000018 Rmu_sc0000200.1_g000020 Rmu_sc0000200.1_g000021 Rmu_sc0000251.1_g000012 Rmu_sc0000251.1_g000015 Rmu_sc0000251.1_g000028 Rmu_sc0000253.1_g000015 Rmu_sc0000255.1_g000045 Rmu_sc0000255.1_g000046 Rmu_sc0001292.1_g000013 Rmu_sc0001292.1_g000018 Rmu_sc0001292.1_g000028 Rmu_sc0001292.1_g000029 Rmu_sc0001349.1_g000006 Rmu_sc0001349.1_g000014 Rmu_sc0001582.1_g000006 Rmu_sc0001582.1_g000018 Rmu_sc0001582.1_g000020 Rmu_sc0001692.1_g000007 Rmu_sc0001692.1_g000024 Rmu_sc0001692.1_g000026 Rmu_sc0001692.1_g000029 Rmu_sc0001692.1_g000030 Rmu_sc0001835.1_g000006 Rmu_sc0001835.1_g000010 Rmu_sc0002071.1_g000005 Rmu_sc0002276.1_g000002 Rmu_sc0002276.1_g000009 Rmu_sc0002329.1_g000018 Rmu_sc0002329.1_g000023 Rmu_sc0002329.1_g000025 Rmu_sc0002523.1_g000005 Rmu_sc0003573.1_g000005 Rmu_sc0003573.1_g000006 Rmu_sc0004099.1_g000021 Rmu_sc0005812.1_g000009 Rmu_sc0006271.1_g000002 Rmu_sc0006287.1_g000038 Rmu_sc0006439.1_g000008 Rmu_sc0007456.1_g000004 Rmu_sc0007581.1_g000009 Rmu_sc0007849.1_g000014 Rmu_sc0008115.1_g000012 Rmu_sc0010521.1_g000004 Rmu_sc0012471.1_g000017 Rmu_sc0014762.1_g000001 Rmu_sc0015150.1_g000003 Rmu_sc0017221.1_g000001 Rmu_sc0017299.1_g000001 Rmu_sc0017299.1_g000002 Rmu_sc0021457.1_g000001 Rmu_sc0022067.1_g000001 Rmu_sc0033275.1_g000001 Rmu_ssc0000245.1_g000012 Rmu_ssc0000359.1_g000035 Rmu_ssc0000359.1_g000067 Rmu_ssc0000359.1_g000072 Rmu_ssc0000434.1_g000005 Rmu_ssc0000434.1_g000007
rosa_roxburghii Rroxscaffold_4G00298420 Rroxscaffold_4G00298720 Rroxscaffold_4G00308990 Rroxscaffold_4G00309000 Rroxscaffold_4G00309010 Rroxscaffold_4G00309050 Rroxscaffold_4G00309070 Rroxscaffold_4G00309100 Rroxscaffold_4G00310030 Rroxscaffold_4G00310050 Rroxscaffold_4G00311880 Rroxscaffold_5G00339420 Rroxscaffold_5G00339450 Rroxscaffold_5G00344880 Rroxscaffold_5G00352270 Rroxscaffold_5G00362240 Rroxscaffold_5G00370840 Rroxscaffold_7G00202970
rosa_rugosa Rorug01G0159100.1 Rorug01G0159200.1 Rorug01G0171700 Rorug01G0171900 Rorug01G0172000 Rorug01G0191700 Rorug01G0191800 Rorug01G0256900 Rorug01G0257000 Rorug01G0257100 Rorug03G0198000 Rorug03G0366300.1 Rorug03G0366400.1 Rorug03G0366500.1 Rorug04G0081200 Rorug04G0081200 Rorug04G0081200 Rorug04G0233700 Rorug04G0233800 Rorug04G0233800 Rorug06G0013300
rosa_samantha Rh1CG138800 Rh1CG161300 Rh1CG173800 Rh1CG179800 Rh1CG180100 Rh1CG180500 Rh1CG180800 Rh1CG180900 Rh1CG194100 Rh1DG205100 Rh3AG236300 Rh4AG052000 Rh4AG052100 Rh4AG145900 Rh4AG289700 Rh4AG289800 Rh6AG136800 Rh6AG137300 Rh6BG133600 Rh6CG132000 Rh6CG134000 Rh6DG119300
rosa_wichuraiana Rw0G003420 Rw1G015500 Rw1G016110 Rw1G016180 Rw1G016210 Rw1G016230 Rw1G016280 Rw1G016440 Rw1G016450 Rw1G016460 Rw1G016480 Rw1G017490 Rw1G024140 Rw1G024160 Rw3G022530 Rw4G004140 Rw4G004190 Rw4G011850 Rw6G011800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 433
AcsI RAATTY 2 cut(s) 218, 248
AfaI GTAC 3 cut(s) 80, 377, 526
AfiI CCNNNNNNNGG 1 cut(s) 408
AflII CTTAAG 1 cut(s) 163
AflIII ACRYGT 1 cut(s) 472
AgsI TTSAA 3 cut(s) 113, 217, 248
AluBI AGCT 2 cut(s) 61, 183
AluI AGCT 2 cut(s) 61, 183
Alw21I GWGCWC 1 cut(s) 339
AoxI GGCC 1 cut(s) 494
ApoI RAATTY 2 cut(s) 218, 248
AseI ATTAAT 1 cut(s) 107
AspS9I GGNCC 1 cut(s) 494
AxyI CCTNAGG 1 cut(s) 389
BbsI GAAGAC 3 cut(s) 135, 308, 359
Bbv12I GWGCWC 1 cut(s) 339
BbvCI CCTCAGC 1 cut(s) 371
BccI CCATC 2 cut(s) 283, 410
BfmI CTRYAG 1 cut(s) 427
BfrI CTTAAG 1 cut(s) 163
BmcAI AGTACT 1 cut(s) 80
BmgT120I GGNCC 1 cut(s) 494
BmiI GGNNCC 1 cut(s) 304
BmrI ACTGGG 1 cut(s) 417
BmuI ACTGGG 1 cut(s) 417
BpiI GAAGAC 3 cut(s) 135, 308, 359
BplI GAGNNNNNCTC 3 cut(s) 188, 220, 500
BpmI CTGGAG 4 cut(s) 59, 167, 205, 249
Bpu10I CCTNAGC 2 cut(s) 179, 371
BpuEI CTTGAG 2 cut(s) 107, 458
BsaAI YACGTR 1 cut(s) 524
Bsc4I CCNNNNNNNGG 1 cut(s) 408
Bse1I ACTGG 2 cut(s) 76, 412
Bse21I CCTNAGG 1 cut(s) 389
BseGI GGATG 3 cut(s) 294, 301, 417
BseLI CCNNNNNNNGG 1 cut(s) 408
BseMII CTCAG 2 cut(s) 362, 403
BseNI ACTGG 2 cut(s) 76, 412
BseRI GAGGAG 3 cut(s) 296, 462, 521
BshFI GGCC 1 cut(s) 496
BsiHKAI GWGCWC 1 cut(s) 339
BslI CCNNNNNNNGG 1 cut(s) 408
BsmI GAATGC 1 cut(s) 422
BsnI GGCC 1 cut(s) 496
Bsp1286I GDGCHC 1 cut(s) 339
Bsp143I GATC 1 cut(s) 118
BspANI GGCC 1 cut(s) 496
BspCNI CTCAG 2 cut(s) 363, 402
BspLI GGNNCC 1 cut(s) 304
BspTI CTTAAG 1 cut(s) 163
BsrI ACTGG 2 cut(s) 76, 412
BssMI GATC 1 cut(s) 118
Bst4CI ACNGT 3 cut(s) 341, 358, 431
BstAFI CTTAAG 1 cut(s) 163
BstBAI YACGTR 1 cut(s) 524
BstC8I GCNNGC 1 cut(s) 498
BstDEI CTNAG 3 cut(s) 179, 371, 389
BstF5I GGATG 3 cut(s) 294, 301, 417
BstKTI GATC 1 cut(s) 121
BstMBI GATC 1 cut(s) 118
BstNSI RCATGY 1 cut(s) 476
BstSFI CTRYAG 1 cut(s) 427
BstV2I GAAGAC 3 cut(s) 135, 308, 359
Bsu36I CCTNAGG 1 cut(s) 389
BsuRI GGCC 1 cut(s) 496
BtsCI GGATG 3 cut(s) 294, 301, 417
BtsIMutI CAGTG 2 cut(s) 337, 405
Cac8I GCNNGC 1 cut(s) 498
Cfr13I GGNCC 1 cut(s) 494
Csp6I GTAC 3 cut(s) 79, 376, 525
CviAII CATG 4 cut(s) 268, 307, 349, 473
CviQI GTAC 3 cut(s) 79, 376, 525
DdeI CTNAG 3 cut(s) 179, 371, 389
DpnI GATC 1 cut(s) 120
DpnII GATC 1 cut(s) 118
Eco81I CCTNAGG 1 cut(s) 389
FaeI CATG 4 cut(s) 271, 310, 352, 476
FaiI YATR 7 cut(s) 28, 269, 308, 330, 350, 474, 529
FatI CATG 4 cut(s) 267, 306, 348, 472
FblI GTMKAC 1 cut(s) 433
FokI GGATG 3 cut(s) 301, 308, 424
GsuI CTGGAG 4 cut(s) 59, 167, 205, 249
HaeIII GGCC 1 cut(s) 496
Hin1II CATG 4 cut(s) 271, 310, 352, 476
Hpy166II GTNNAC 1 cut(s) 434
Hpy188I TCNGA 1 cut(s) 24
Hpy188III TCNNGA 3 cut(s) 146, 245, 362
Hpy8I GTNNAC 1 cut(s) 434
HpyAV CCTTC 2 cut(s) 293, 489
HpyCH4III ACNGT 3 cut(s) 341, 358, 431
HpyCH4IV ACGT 1 cut(s) 523
HpyCH4V TGCA 3 cut(s) 30, 43, 267
HpyF3I CTNAG 3 cut(s) 179, 371, 389
HpySE526I ACGT 1 cut(s) 523
Hsp92II CATG 4 cut(s) 271, 310, 352, 476
Kzo9I GATC 1 cut(s) 118
LmnI GCTCC 2 cut(s) 302, 449
LpnPI CCDG 9 cut(s) 89, 131, 146, 169, 213, 277, 376, 393, 510
MaeII ACGT 1 cut(s) 523
MalI GATC 1 cut(s) 120
MboI GATC 1 cut(s) 118
MboII GAAGA 4 cut(s) 140, 211, 308, 364
MfeI CAATTG 1 cut(s) 323
MhlI GDGCHC 1 cut(s) 339
MluCI AATT 6 cut(s) 108, 141, 218, 248, 323, 395
MmeI TCCRAC 1 cut(s) 493
MseI TTAA 2 cut(s) 107, 164
MslI CAYNNNNRTG 1 cut(s) 410
MspCI CTTAAG 1 cut(s) 163
MunI CAATTG 1 cut(s) 323
Mva1269I GAATGC 1 cut(s) 422
NdeII GATC 1 cut(s) 118
NlaIII CATG 4 cut(s) 271, 310, 352, 476
NlaIV GGNNCC 1 cut(s) 304
NspI RCATGY 1 cut(s) 476
PciI ACATGT 1 cut(s) 472
PctI GAATGC 1 cut(s) 422
Ppu21I YACGTR 1 cut(s) 524
PscI ACATGT 1 cut(s) 472
PshBI ATTAAT 1 cut(s) 107
PspN4I GGNNCC 1 cut(s) 304
PspPI GGNCC 1 cut(s) 494
RsaI GTAC 3 cut(s) 80, 377, 526
RsaNI GTAC 3 cut(s) 79, 376, 525
RseI CAYNNNNRTG 1 cut(s) 410
SaqAI TTAA 2 cut(s) 107, 164
Sau3AI GATC 1 cut(s) 118
Sau96I GGNCC 1 cut(s) 494
ScaI AGTACT 1 cut(s) 80
SduI GDGCHC 1 cut(s) 339
SetI ASST 7 cut(s) 63, 75, 93, 180, 185, 377, 526
SfcI CTRYAG 1 cut(s) 427
SmiMI CAYNNNNRTG 1 cut(s) 410
SmlI CTYRAG 3 cut(s) 122, 163, 437
SmoI CTYRAG 3 cut(s) 122, 163, 437
Sse9I AATT 6 cut(s) 108, 141, 218, 248, 323, 395
TaaI ACNGT 3 cut(s) 341, 358, 431
TaiI ACGT 1 cut(s) 526
TasI AATT 6 cut(s) 108, 141, 218, 248, 323, 395
TatI WGTACW 1 cut(s) 78
Tru1I TTAA 2 cut(s) 107, 164
Tru9I TTAA 2 cut(s) 107, 164
TscAI CASTG 2 cut(s) 344, 412
TspDTI ATGAA 2 cut(s) 312, 365
TspRI CASTG 2 cut(s) 344, 412
Vha464I CTTAAG 1 cut(s) 163
VspI ATTAAT 1 cut(s) 107
XapI RAATTY 2 cut(s) 218, 248
XceI RCATGY 1 cut(s) 476
XmiI GTMKAC 1 cut(s) 433
ZrmI AGTACT 1 cut(s) 80
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.