Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0000069

Physical Location & Seq

Genomic Coordinates Reverse (-)

10970128 .. 10975150

Gene Structure 5023 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG052100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2841 bp

ATGGCTGAGGCTGTTGTTTCTTTTCTCGCGGAAAGAGTTGGTGACTACATCATTCAAGAAGGCAGATCCTTGTTCGGAGTTGGCAATCAAGTTAGGCGTGCACACAGAGACCTAGTATTCATCAAGGGCTTCCTCAAAGATGCAGACGCAAAGCGACGAGACAGTGAGGCAATACGCACTTTTGTTGCCGAAATTAGAGATGCTGCTTATGATTTGGAGGATGTCATTGAAGCTTTTGTCTTGAAGGTGGATTCCAGGAGGAAAGGAGGTATAAAGAATGTTTTGAAGAGGTTGGGGTGCATCTTCGTTGAAGGAGTTCGCCGTTACCAGATTGGGTCAGAAATTGGGGTAATTACTATCACGATTTCTGATTTGAAGCAGAACTTGCAAACTTATGGTATCAAGGAGATCAGTGATTCCTCTACTACCCTACAATTGTGTGAAGCACAACAACTACTGAGGCGAACCTACACTCATGTTATTGATCGTAATGTGGTCGGGCTAGAGGATTCTGTCCATGAATTGGTTGGGCATTTGGTGAAGGAAGAGCATCGCCACCGAGTTGTTTCTATTATTGGGATGGGCGGATCTGGGAAGACAACTATTGCTAAACAAGTTTATCATCACAAAGAGGTAACAGACCATTTTGATTGTTTGGCTTGGGTTTGTATATCTCAACAATATCAAGTCAGGGATGTCTTGGAGAGGATATATGTCAAACTTATTTCCCCTACAAAAGAGGAGAGAGAAGAAATCAAAAATTTGAAGGATGACGAAATACCAGGGAGGCTTTCTCGTCTCCAAAATGAAAGAAAATGTTTGATTGTCCTTGATGACATTTGGAAAACAGAGGCCTGGGACTTTTGGAAGGCTGCATTTGAATGCCATGAAGACTCAAAGAGCAGGATACTACTTACGACACGCAATGAACAAGTAGCTTCGCATGCCGATGAGAGCGGTTTTCACTACCGACCTCCAGCACTAAATGAGTCTGAGAGTTGGGAGCTGTTTGAGAAGATTGCAATGAGCGGAAGGAAAGCAGGAATAGGTGCTGAAGTTTACACGAAGATGGAAGAGTTAGGAAAAGAGATGGTTCAACATTGTAAGGGTCTGCCACTAGCTATCATTGTACTTGCTGGACTTCTTGCTAGAAAAAACACAATTAAAGATTGGATAAACATACAAGAAAATGTTGGTGTTTACATAAGTAGAGGTTTTGGTCGCCAGGAAGAAGAACATGCATATGCATCATGGGTGTTGGCGTTGAGTTATGATGACTTGCCGTATCACTTAAAACCCTGTTTCCTATATTTAGGACATTTTCCAGAGGATCATGAGATCCGAGTGAACAGTTTGACAAGATTATGGATTGCAGAAGGTTTTATTTCTTTGACACAACAAAGACAAAGTTCTGGGGAAACAATGGAGAATGTGGCATACAATTGGTTGAATGAGTTGGTAGAAAGGTGTGTGATTCAAGTAGGAGAGAAAAGTTCAACTTCTGAGAATATTAAAACTTGCAGGATGCATGATCTTTTGCGAGATTTGTGTTTGAGGAAGGCGGAAGAGGAAAATTTTCTCCAAGTTGTCAAAGGTTCTCATAAAAATGAGGCAATGCATCCAGCTTCTTCTTCGTCTTCCATGGTAACCTATGAATCACCAATGAGTAAGATTCGAAGACTTGCCGTCTACTTGGATGAGATTGATGATAAATTGGTACCCTCACTTGGGGAAAGAGGTGGGCACCTTAGGTCCTTGTTATATTTTGGCCCCAACGATTATTATTGGTTTCCTAGAAGGAAAGAATTAATACCTTCCATGTTCAAGGATTTCAAATTACTCAGAGCATTGATGATTGAAGGTATGGATGATGATCGAGTAAAAATAAAGCTGCCTAGAGAAATTGGAAACATGGTCCACTTGAGGTTTCTGAGTCTAAGGAGAAGTAATATAAAATCGTTTCCTCCTTTCCTAGGAAACTTGATTTGTTTGCAGACACTTGATTTCCGTGTTAGAGATAACGACATGTTTATCCCAAATGTGATATGCAAGATGAAAAAGTTGAGACATTTATACCTTCCAAGGGATTACAGGGCTAGAGGTAAACTGCAGCTATCTCCTCTCGGTGATTTACAAACTTTAAATTCTGTTTCGAGTGGATATTGTGATTTGAATGATCTTGCTAAACTAGGCAATCTAAGGAAACTGAGAATAAGATTGTCATCTAGCCAATCGAAAAATCTGGAGAAAATCTTGGATGCGGCAGGCTGCGTGCTCAACGGTATTCGGTCCCTGCGGTTGGAGAACGATGTTGGAATGGAAAGCGGTGCAGAGGAGGTTAGTAAAATAGTTGCAAGGTGCGGTCAAATATACAAGTTGGAGCTGATTGGGCCCACACTAGAACTACCGAAAGAGTTCCACCTCACCAAGTTACTTTTGTCTGGATGTGGTCTCAAGGACGACCAAATGGCCGTACTAGAGAAGCTGCCCAACCTGAAAAGTCTTCAACTGTGGGATAATGTGTTTGAGGAAAATGCAAAAGTATTGGTTTTCTCCGCTGGAAGCTTTCCTCGTCTTCAGTTTCTTTCACTTTGGTATTTGTTTGGAATAACAGAGTGGAGGGTGGAGGAAGGAGCCATGCCTTGTCTCTGCAAATTGGTCATTAATTATTGCAAAGAATGGAGTACGGTTCCAGATGGGCTGAGAAACCTTACTACCCTCAAGGAATTGAAGATTCTGGGTATGCCTAAACTATTCTGTAGTAAGCTTGAGGAAGGAGGAGAAGACTTCCATAAAGTCCAACACATCCCTTCCCTTATAATCCAACATCCGTTTGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001101 GO:0002230 GO:0002238 GO:0002239 GO:0002252 GO:0002376 GO:0002682 GO:0002697 GO:0002831 GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008219 GO:0009314 GO:0009416 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009615 GO:0009620 GO:0009626 GO:0009628 GO:0009637 GO:0009642 GO:0009646 GO:0009719 GO:0009725 GO:0009751 GO:0009987 GO:0010033 GO:0012501 GO:0014070 GO:0016020 GO:0023052 GO:0030054 GO:0031347 GO:0032101 GO:0032870 GO:0033554 GO:0034050 GO:0035690 GO:0036094 GO:0042221 GO:0042493 GO:0043207 GO:0043900 GO:0044464 GO:0045087 GO:0046677 GO:0048583 GO:0050688 GO:0050691 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051607 GO:0051704 GO:0051707 GO:0051716 GO:0055044 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071407 GO:0071446 GO:0071495 GO:0071944 GO:0080134 GO:0097159 GO:0098542 GO:1901265 GO:1901363 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NB-ARC

Protein Analysis

946

Amino Acids

108.32

Weight (kDa)

7.75

Isoelectric Point (pI)

46.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rx_N	PF18052	5 - 88	8.5e-19	Rx N-terminal domain
NB-ARC	PF00931	169 - 344	4.4e-42	NB-ARC domain
WHD_DRP	PF23559	441 - 517	3.6e-20	Disease resistance protein Winged helix domain
LRR_14	PF23598	597 - 912	3.5e-36	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000069)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10920 AT1G10920 AT1G10920 AT1G10920 AT1G10920 AT1G50180 AT1G53350 AT1G58390 AT1G58390 AT1G58400 AT1G58400 AT1G58400 AT1G58410 AT1G58410 AT1G58410 AT1G58410 AT1G58602 AT1G58602 AT1G58807 AT1G58807 AT1G58848 AT1G58848 AT1G59124 AT1G59124 AT1G59218 AT1G59218 AT1G59218 AT1G59620 AT1G59780 AT1G59780 AT5G35450 AT5G35450 AT5G43470 AT5G43470 AT5G43470 AT5G43470 AT5G48620 AT5G48620 AT5G48620 AT5G48620 AT5G48620 AT5G48620
fragaria_vesca	FvH4_4g04072 FvH4_4g22931 FvH4_4g22931 FvH4_4g22940 FvH4_6g49940 FvH4_6g49940 FvH4_7g08100 FvH4_7g08870 FvH4_7g08870 FvH4_7g09280 FvH4_7g09290 FvH4_7g15190 FvH4_7g15200 FvH4_7g15240 FvH4_7g15240 FvH4_7g33440
malus_domestica	MD00G1174600.v1.1 MD01G1113700.v1.1 MD03G1071300.v1.1 MD04G1041500.v1.1 MD04G1238000.v1.1 MD07G1029000.v1.1 MD07G1092100.v1.1 MD07G1092300.v1.1 MD07G1092600.v1.1 MD12G1256300.v1.1 MD13G1128200.v1.1 MD13G1128400.v1.1 MD17G1268000.v1.1
prunus_persica	Prupe.1G041300_v2.0.a1 Prupe.1G041300_v2.0.a1 Prupe.1G042900_v2.0.a1 Prupe.1G043100_v2.0.a1 Prupe.1G043100_v2.0.a1 Prupe.1G043100_v2.0.a1 Prupe.1G043100_v2.0.a1 Prupe.1G043600_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G046700_v2.0.a1 Prupe.1G047700_v2.0.a1 Prupe.1G047900_v2.0.a1 Prupe.1G048000_v2.0.a1 Prupe.1G048500_v2.0.a1 Prupe.1G048500_v2.0.a1 Prupe.1G049900_v2.0.a1 Prupe.1G051500_v2.0.a1 Prupe.1G051800_v2.0.a1 Prupe.1G051900_v2.0.a1 Prupe.1G052200_v2.0.a1 Prupe.1G194900_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217900_v2.0.a1 Prupe.1G217900_v2.0.a1 Prupe.1G217900_v2.0.a1 Prupe.1G217900_v2.0.a1 Prupe.1G217900_v2.0.a1 Prupe.2G117200_v2.0.a1 Prupe.2G117200_v2.0.a1 Prupe.2G117200_v2.0.a1 Prupe.2G117200_v2.0.a1 Prupe.2G117300_v2.0.a1 Prupe.2G117400_v2.0.a1 Prupe.2G117500_v2.0.a1 Prupe.2G117700_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G119900_v2.0.a1
pyrus_communis	pycom03g05750 pycom04g21110 pycom07g07530 pycom07g07590 pycom13g11110 pycom13g11140 pycom13g11160 pycom13g11170 pycom17g26680
rosa_chinensis	RchiOBHm_Chr1g0341231 RchiOBHm_Chr1g0344091 RchiOBHm_Chr1g0344161 RchiOBHm_Chr1g0345001 RchiOBHm_Chr1g0345351 RchiOBHm_Chr1g0345371 RchiOBHm_Chr1g0345391 RchiOBHm_Chr1g0345531 RchiOBHm_Chr1g0345551 RchiOBHm_Chr1g0345571 RchiOBHm_Chr1g0345581 RchiOBHm_Chr1g0345661 RchiOBHm_Chr1g0345691 RchiOBHm_Chr1g0345761 RchiOBHm_Chr1g0345791 RchiOBHm_Chr1g0345821 RchiOBHm_Chr1g0345911 RchiOBHm_Chr1g0345941 RchiOBHm_Chr1g0357611 RchiOBHm_Chr1g0357911 RchiOBHm_Chr1g0357921 RchiOBHm_Chr1g0357931 RchiOBHm_Chr1g0357971 RchiOBHm_Chr1g0358121 RchiOBHm_Chr1g0383491 RchiOBHm_Chr1g0383511 RchiOBHm_Chr1g0383521 RchiOBHm_Chr3g0480581 RchiOBHm_Chr4g0394341 RchiOBHm_Chr4g0394361 RchiOBHm_Chr4g0394411 RchiOBHm_Chr4g0394441 RchiOBHm_Chr4g0407681 RchiOBHm_Chr4g0429191 RchiOBHm_Chr4g0429201 RchiOBHm_Chr4g0429211 RchiOBHm_Chr4g0429221 RchiOBHm_Chr6g0265091
rosa_laevigata	RLG00000007088 RLG00000008700 RLG00000009190 RLG00000009702 RLG00000014210 RLG00000028829 RLG00000028833 RLG00000028837 RLG00000028838 RLG00000028921 RLG00000028926
rosa_multiflora	Rmu_co8366955.1_g000001 Rmu_co8394205.1_g000001 Rmu_sc0000019.1_g000001 Rmu_sc0000054.1_g000031 Rmu_sc0000054.1_g000033 Rmu_sc0000200.1_g000002 Rmu_sc0000200.1_g000007 Rmu_sc0000200.1_g000018 Rmu_sc0000200.1_g000020 Rmu_sc0000200.1_g000021 Rmu_sc0000251.1_g000012 Rmu_sc0000251.1_g000015 Rmu_sc0000251.1_g000028 Rmu_sc0000253.1_g000015 Rmu_sc0000255.1_g000045 Rmu_sc0000255.1_g000046 Rmu_sc0001292.1_g000013 Rmu_sc0001292.1_g000018 Rmu_sc0001292.1_g000028 Rmu_sc0001292.1_g000029 Rmu_sc0001349.1_g000006 Rmu_sc0001349.1_g000014 Rmu_sc0001582.1_g000006 Rmu_sc0001582.1_g000018 Rmu_sc0001582.1_g000020 Rmu_sc0001692.1_g000007 Rmu_sc0001692.1_g000024 Rmu_sc0001692.1_g000026 Rmu_sc0001692.1_g000029 Rmu_sc0001692.1_g000030 Rmu_sc0001835.1_g000006 Rmu_sc0001835.1_g000010 Rmu_sc0002071.1_g000005 Rmu_sc0002276.1_g000002 Rmu_sc0002276.1_g000009 Rmu_sc0002329.1_g000018 Rmu_sc0002329.1_g000023 Rmu_sc0002329.1_g000025 Rmu_sc0002523.1_g000005 Rmu_sc0003573.1_g000005 Rmu_sc0003573.1_g000006 Rmu_sc0004099.1_g000021 Rmu_sc0005812.1_g000009 Rmu_sc0006271.1_g000002 Rmu_sc0006287.1_g000038 Rmu_sc0006439.1_g000008 Rmu_sc0007456.1_g000004 Rmu_sc0007581.1_g000009 Rmu_sc0007849.1_g000014 Rmu_sc0008115.1_g000012 Rmu_sc0010521.1_g000004 Rmu_sc0012471.1_g000017 Rmu_sc0014762.1_g000001 Rmu_sc0015150.1_g000003 Rmu_sc0017221.1_g000001 Rmu_sc0017299.1_g000001 Rmu_sc0017299.1_g000002 Rmu_sc0021457.1_g000001 Rmu_sc0022067.1_g000001 Rmu_sc0033275.1_g000001 Rmu_ssc0000245.1_g000012 Rmu_ssc0000359.1_g000035 Rmu_ssc0000359.1_g000067 Rmu_ssc0000359.1_g000072 Rmu_ssc0000434.1_g000005 Rmu_ssc0000434.1_g000007
rosa_roxburghii	Rroxscaffold_4G00298420 Rroxscaffold_4G00298720 Rroxscaffold_4G00308990 Rroxscaffold_4G00309000 Rroxscaffold_4G00309010 Rroxscaffold_4G00309050 Rroxscaffold_4G00309070 Rroxscaffold_4G00309100 Rroxscaffold_4G00310030 Rroxscaffold_4G00310050 Rroxscaffold_4G00311880 Rroxscaffold_5G00339420 Rroxscaffold_5G00339450 Rroxscaffold_5G00344880 Rroxscaffold_5G00352270 Rroxscaffold_5G00362240 Rroxscaffold_5G00370840 Rroxscaffold_7G00202970
rosa_rugosa	Rorug01G0159100.1 Rorug01G0159200.1 Rorug01G0171700 Rorug01G0171900 Rorug01G0172000 Rorug01G0191700 Rorug01G0191800 Rorug01G0256900 Rorug01G0257000 Rorug01G0257100 Rorug03G0198000 Rorug03G0366300.1 Rorug03G0366400.1 Rorug03G0366500.1 Rorug04G0081200 Rorug04G0081200 Rorug04G0081200 Rorug04G0233700 Rorug04G0233800 Rorug04G0233800 Rorug06G0013300
rosa_samantha	Rh1CG138800 Rh1CG161300 Rh1CG173800 Rh1CG179800 Rh1CG180100 Rh1CG180500 Rh1CG180800 Rh1CG180900 Rh1CG194100 Rh1DG205100 Rh3AG236300 Rh4AG052000 Rh4AG052100 Rh4AG145900 Rh4AG289700 Rh4AG289800 Rh6AG136800 Rh6AG137300 Rh6BG133600 Rh6CG132000 Rh6CG134000 Rh6DG119300
rosa_wichuraiana	Rw0G003420 Rw1G015500 Rw1G016110 Rw1G016180 Rw1G016210 Rw1G016230 Rw1G016280 Rw1G016440 Rw1G016450 Rw1G016460 Rw1G016480 Rw1G017490 Rw1G024140 Rw1G024160 Rw3G022530 Rw4G004140 Rw4G004190 Rw4G011850 Rw6G011800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2819
Acc65I	GGTACC	1 cut(s)	1717
AccB1I	GGYRCC	2 cut(s)	1717, 1743
AccB7I	CCANNNNNTGG	1 cut(s)	523
AccBSI	CCGCTC	2 cut(s)	957, 1029
AccI	GTMKAC	1 cut(s)	1689
AccII	CGCG	1 cut(s)	29
AclWI	GGATC	4 cut(s)	60, 595, 1333, 1338
AcoI	YGGCCR	1 cut(s)	2469
AcsI	RAATTY	3 cut(s)	760, 1573, 2143
AcuI	CTGAAG	2 cut(s)	1074, 2561
AfaI	GTAC	4 cut(s)	1131, 1719, 2475, 2686
AfiI	CCNNNNNNNGG	6 cut(s)	523, 1727, 1728, 1973, 2083, 2299
AflIII	ACRYGT	1 cut(s)	2025
AhdI	GACNNNNNGTC	1 cut(s)	1685
AjnI	CCWGG	4 cut(s)	254, 781, 854, 1224
Alw21I	GWGCWC	2 cut(s)	103, 2277
Alw26I	GTCTC	6 cut(s)	102, 153, 803, 2059, 2456, 2651
Alw44I	GTGCAC	1 cut(s)	99
AlwI	GGATC	4 cut(s)	60, 595, 1333, 1338
AoxI	GGCC	4 cut(s)	852, 1768, 2390, 2469
ApaI	GGGCCC	1 cut(s)	2394
ApaLI	GTGCAC	1 cut(s)	99
ApeKI	GCWGC	6 cut(s)	203, 872, 1891, 2110, 2268, 2485
ApoI	RAATTY	3 cut(s)	760, 1573, 2143
AseI	ATTAAT	2 cut(s)	1808, 2664
Asp700I	GAANNNNTTC	3 cut(s)	315, 1575, 2414
Asp718I	GGTACC	1 cut(s)	1717
AspA2I	CCTAGG	1 cut(s)	1972
AspS9I	GGNCC	6 cut(s)	1752, 1769, 1915, 2289, 2390, 2391
AsuHPI	GGTGA	5 cut(s)	53, 550, 1650, 2138, 2416
AsuII	TTCGAA	1 cut(s)	1675
AvaII	GGWCC	3 cut(s)	1752, 1915, 2289
AvrII	CCTAGG	1 cut(s)	1972
AxyI	CCTNAGG	1 cut(s)	1748
BaeGI	GKGCMC	3 cut(s)	103, 1746, 2394
BanI	GGYRCC	2 cut(s)	1717, 1743
BanII	GRGCYC	1 cut(s)	2394
BbsI	GAAGAC	7 cut(s)	602, 897, 1629, 1684, 2495, 2567, 2790
Bbv12I	GWGCWC	2 cut(s)	103, 2277
BbvCI	CCTCAGC	1 cut(s)	6
BbvI	GCAGC	6 cut(s)	190, 859, 1878, 2122, 2255, 2472
BccI	CCATC	4 cut(s)	574, 1063, 1084, 2690
BceAI	ACGGC	4 cut(s)	306, 1267, 1670, 2456
BciT130I	CCWGG	4 cut(s)	256, 783, 856, 1226
BciVI	GTATCC	1 cut(s)	900
BcoDI	GTCTC	6 cut(s)	102, 153, 803, 2059, 2456, 2651
BfmI	CTRYAG	2 cut(s)	2108, 2758
BfuI	GTATCC	1 cut(s)	900
BisI	GCNGC	7 cut(s)	204, 873, 1892, 2111, 2262, 2269, 2486
BlnI	CCTAGG	1 cut(s)	1972
BlsI	GCNGC	7 cut(s)	205, 874, 1893, 2112, 2263, 2270, 2487
Bme1390I	CCNGG	4 cut(s)	256, 783, 856, 1226
Bme18I	GGWCC	3 cut(s)	1752, 1915, 2289
BmeRI	GACNNNNNGTC	1 cut(s)	1685
BmgT120I	GGNCC	6 cut(s)	1752, 1769, 1915, 2289, 2390, 2391
BmiI	GGNNCC	7 cut(s)	1719, 1745, 1771, 2291, 2392, 2635, 2691
BmrFI	CCNGG	4 cut(s)	256, 783, 856, 1226
BmsI	GCATC	8 cut(s)	130, 190, 309, 559, 1256, 1515, 1627, 2248
BpiI	GAAGAC	7 cut(s)	602, 897, 1629, 1684, 2495, 2567, 2790
BplI	GAGNNNNNCTC	2 cut(s)	778, 810
BpmI	CTGGAG	2 cut(s)	960, 2264
Bpu10I	CCTNAGC	1 cut(s)	6
Bpu14I	TTCGAA	1 cut(s)	1675
BpuEI	CTTGAG	4 cut(s)	1942, 2438, 2705, 2789
BsaBI	GATNNNNATC	2 cut(s)	1872, 2221
BsaI	GGTCTC	2 cut(s)	102, 2456
BsaJI	CCNNGG	5 cut(s)	782, 855, 1641, 1972, 2081
Bsc4I	CCNNNNNNNGG	6 cut(s)	523, 1727, 1728, 1973, 2083, 2299
Bse21I	CCTNAGG	1 cut(s)	1748
Bse3DI	GCAATG	3 cut(s)	931, 1029, 1620
Bse8I	GATNNNNATC	2 cut(s)	1872, 2221
BseBI	CCWGG	4 cut(s)	256, 783, 856, 1226
BseDI	CCNNGG	5 cut(s)	782, 855, 1641, 1972, 2081
BseJI	GATNNNNATC	2 cut(s)	1872, 2221
BseLI	CCNNNNNNNGG	6 cut(s)	523, 1727, 1728, 1973, 2083, 2299
BseMI	GCAATG	3 cut(s)	931, 1029, 1620
BseMII	CTCAG	7 cut(s)	449, 984, 1494, 1855, 1922, 2198, 2693
BseRI	GAGGAG	4 cut(s)	755, 2109, 2348, 2793
BseSI	GKGCMC	3 cut(s)	103, 1746, 2394
BseXI	GCAGC	6 cut(s)	190, 859, 1878, 2122, 2255, 2472
BsgI	GTGCAG	1 cut(s)	2349
Bsh1236I	CGCG	1 cut(s)	29
BshFI	GGCC	4 cut(s)	854, 1770, 2392, 2471
BshNI	GGYRCC	2 cut(s)	1717, 1743
BsiHKAI	GWGCWC	2 cut(s)	103, 2277
BslFI	GGGAC	2 cut(s)	872, 2275
BslI	CCNNNNNNNGG	6 cut(s)	523, 1727, 1728, 1973, 2083, 2299
BsmAI	GTCTC	6 cut(s)	102, 153, 803, 2059, 2456, 2651
BsmBI	CGTCTC	1 cut(s)	803
BsmFI	GGGAC	2 cut(s)	872, 2275
BsmI	GAATGC	1 cut(s)	887
BsnI	GGCC	4 cut(s)	854, 1770, 2392, 2471
Bso31I	GGTCTC	2 cut(s)	102, 2456
Bsp119I	TTCGAA	1 cut(s)	1675
Bsp120I	GGGCCC	1 cut(s)	2390
Bsp1286I	GDGCHC	4 cut(s)	103, 1746, 2277, 2394
Bsp143I	GATC	9 cut(s)	65, 408, 484, 587, 1330, 1338, 1531, 1873, 2176
Bsp19I	CCATGG	1 cut(s)	1641
BspANI	GGCC	4 cut(s)	854, 1770, 2392, 2471
BspCNI	CTCAG	7 cut(s)	450, 985, 1495, 1854, 1923, 2199, 2694
BspFNI	CGCG	1 cut(s)	29
BspHI	TCATGA	1 cut(s)	1333
BspLI	GGNNCC	7 cut(s)	1719, 1745, 1771, 2291, 2392, 2635, 2691
BspMAI	CTGCAG	1 cut(s)	2112
BspPI	GGATC	4 cut(s)	60, 595, 1333, 1338
BspQI	GCTCTTC	1 cut(s)	540
BspT104I	TTCGAA	1 cut(s)	1675
BspT107I	GGYRCC	2 cut(s)	1717, 1743
BspTNI	GGTCTC	2 cut(s)	102, 2456
BsrBI	CCGCTC	2 cut(s)	957, 1029
BsrDI	GCAATG	3 cut(s)	931, 1029, 1620
BssECI	CCNNGG	5 cut(s)	782, 855, 1641, 1972, 2081
BssMI	GATC	9 cut(s)	65, 408, 484, 587, 1330, 1338, 1531, 1873, 2176
BssT1I	CCWWGG	3 cut(s)	1641, 1972, 2081
Bst2UI	CCWGG	4 cut(s)	256, 783, 856, 1226
Bst4CI	ACNGT	5 cut(s)	164, 1352, 2282, 2511, 2689
Bst6I	CTCTTC	4 cut(s)	281, 540, 1068, 1560
BstAPI	GCANNNNNTGC	1 cut(s)	385
BstBI	TTCGAA	1 cut(s)	1675
BstC8I	GCNNGC	4 cut(s)	99, 945, 2266, 2273
BstDSI	CCRYGG	1 cut(s)	1641
BstEII	GGTNACC	1 cut(s)	1645
BstENI	CCTNNNNNAGG	1 cut(s)	1971
BstFNI	CGCG	1 cut(s)	29
BstKTI	GATC	9 cut(s)	68, 411, 487, 590, 1333, 1341, 1534, 1876, 2179
BstMAI	GTCTC	6 cut(s)	102, 153, 803, 2059, 2456, 2651
BstMBI	GATC	9 cut(s)	65, 408, 484, 587, 1330, 1338, 1531, 1873, 2176
BstMWI	GCNNNNNNNGC	3 cut(s)	385, 944, 2389
BstNI	CCWGG	4 cut(s)	256, 783, 856, 1226
BstNSI	RCATGY	3 cut(s)	947, 1241, 2029
BstPI	GGTNACC	1 cut(s)	1645
BstSCI	CCNGG	4 cut(s)	254, 781, 854, 1224
BstSFI	CTRYAG	2 cut(s)	2108, 2758
BstSLI	GKGCMC	3 cut(s)	103, 1746, 2394
BstUI	CGCG	1 cut(s)	29
BstV1I	GCAGC	6 cut(s)	190, 859, 1878, 2122, 2255, 2472
BstV2I	GAAGAC	7 cut(s)	602, 897, 1629, 1684, 2495, 2567, 2790
BstX2I	RGATCY	3 cut(s)	65, 587, 1338
BstYI	RGATCY	3 cut(s)	65, 587, 1338
Bsu36I	CCTNAGG	1 cut(s)	1748
BsuI	GTATCC	1 cut(s)	900
BsuRI	GGCC	4 cut(s)	854, 1770, 2392, 2471
BtgI	CCRYGG	1 cut(s)	1641
BtgZI	GCGATG	1 cut(s)	536
BtsIMutI	CAGTG	2 cut(s)	169, 418
Cac8I	GCNNGC	4 cut(s)	99, 945, 2266, 2273
CciI	TCATGA	1 cut(s)	1333
Cfr13I	GGNCC	6 cut(s)	1752, 1769, 1915, 2289, 2390, 2391
CseI	GACGC	1 cut(s)	155
Csp6I	GTAC	4 cut(s)	1130, 1718, 2474, 2685
CviQI	GTAC	4 cut(s)	1130, 1718, 2474, 2685
DpnI	GATC	9 cut(s)	67, 410, 486, 589, 1332, 1340, 1533, 1875, 2178
DpnII	GATC	9 cut(s)	65, 408, 484, 587, 1330, 1338, 1531, 1873, 2176
DraI	TTTAAA	1 cut(s)	2142
DriI	GACNNNNNGTC	1 cut(s)	1685
EaeI	YGGCCR	1 cut(s)	2469
Eam1104I	CTCTTC	4 cut(s)	281, 540, 1068, 1560
Eam1105I	GACNNNNNGTC	1 cut(s)	1685
EarI	CTCTTC	4 cut(s)	281, 540, 1068, 1560
EciI	GGCGGA	2 cut(s)	600, 1577
Eco130I	CCWWGG	3 cut(s)	1641, 1972, 2081
Eco147I	AGGCCT	1 cut(s)	854
Eco24I	GRGCYC	1 cut(s)	2394
Eco31I	GGTCTC	2 cut(s)	102, 2456
Eco47I	GGWCC	3 cut(s)	1752, 1915, 2289
Eco57I	CTGAAG	2 cut(s)	1074, 2561
Eco81I	CCTNAGG	1 cut(s)	1748
Eco91I	GGTNACC	1 cut(s)	1645
EcoNI	CCTNNNNNAGG	1 cut(s)	1971
EcoO109I	RGGNCCY	1 cut(s)	1752
EcoO65I	GGTNACC	1 cut(s)	1645
EcoRII	CCWGG	4 cut(s)	254, 781, 854, 1224
EcoT14I	CCWWGG	3 cut(s)	1641, 1972, 2081
EcoT22I	ATGCAT	4 cut(s)	1243, 1249, 1530, 1620
EcoT38I	GRGCYC	1 cut(s)	2394
ErhI	CCWWGG	3 cut(s)	1641, 1972, 2081
Esp3I	CGTCTC	1 cut(s)	803
FalI	AAGNNNNNCTT	4 cut(s)	368, 400, 1483, 1515
FaqI	GGGAC	2 cut(s)	872, 2275
FauNDI	CATATG	1 cut(s)	1243
FblI	GTMKAC	1 cut(s)	1689
Fnu4HI	GCNGC	7 cut(s)	204, 873, 1892, 2111, 2262, 2269, 2486
FriOI	GRGCYC	1 cut(s)	2394
Fsp4HI	GCNGC	7 cut(s)	204, 873, 1892, 2111, 2262, 2269, 2486
GluI	GCNGC	7 cut(s)	204, 873, 1892, 2111, 2262, 2269, 2486
GsuI	CTGGAG	2 cut(s)	960, 2264
HaeIII	GGCC	4 cut(s)	854, 1770, 2392, 2471
HgaI	GACGC	1 cut(s)	155
HindIII	AAGCTT	3 cut(s)	231, 2563, 2765
HphI	GGTGA	5 cut(s)	53, 550, 1650, 2138, 2416
Hpy166II	GTNNAC	7 cut(s)	101, 1060, 1201, 1348, 1690, 1918, 2105
Hpy188I	TCNGA	8 cut(s)	77, 340, 370, 994, 1343, 1504, 1844, 1932
Hpy188III	TCNNGA	8 cut(s)	56, 241, 361, 1325, 1334, 2243, 2442, 2693
Hpy8I	GTNNAC	7 cut(s)	101, 1060, 1201, 1348, 1690, 1918, 2105
Hpy99I	CGWCG	1 cut(s)	159
HpyCH4III	ACNGT	5 cut(s)	164, 1352, 2282, 2511, 2689
HpyF10VI	GCNNNNNNNGC	3 cut(s)	385, 944, 2389
KpnI	GGTACC	1 cut(s)	1721
Kzo9I	GATC	9 cut(s)	65, 408, 484, 587, 1330, 1338, 1531, 1873, 2176
LguI	GCTCTTC	1 cut(s)	540
LmnI	GCTCC	3 cut(s)	1003, 2380, 2633
Lsp1109I	GCAGC	6 cut(s)	190, 859, 1878, 2122, 2255, 2472
LweI	GCATC	8 cut(s)	130, 190, 309, 559, 1256, 1515, 1627, 2248
MaeIII	GTNAC	5 cut(s)	41, 323, 634, 1645, 2430
MalI	GATC	9 cut(s)	67, 410, 486, 589, 1332, 1340, 1533, 1875, 2178
MbiI	CCGCTC	2 cut(s)	957, 1029
MboI	GATC	9 cut(s)	65, 408, 484, 587, 1330, 1338, 1531, 1873, 2176
MfeI	CAATTG	2 cut(s)	434, 1441
MflI	RGATCY	3 cut(s)	65, 587, 1338
MhlI	GDGCHC	4 cut(s)	103, 1746, 2277, 2394
MlyI	GAGTC	3 cut(s)	887, 998, 1942
MmeI	TCCRAC	4 cut(s)	2280, 2293, 2358, 2824
Mph1103I	ATGCAT	4 cut(s)	1243, 1249, 1530, 1620
MroXI	GAANNNNTTC	3 cut(s)	315, 1575, 2414
MseI	TTAA	7 cut(s)	1164, 1292, 1512, 1808, 2141, 2664, 2839
MslI	CAYNNNNRTG	5 cut(s)	880, 948, 1067, 1242, 1605
MspA1I	CMGCKG	1 cut(s)	2558
MspR9I	CCNGG	4 cut(s)	256, 783, 856, 1226
MunI	CAATTG	2 cut(s)	434, 1441
Mva1269I	GAATGC	1 cut(s)	887
MvaI	CCWGG	4 cut(s)	256, 783, 856, 1226
MvnI	CGCG	1 cut(s)	29
MwoI	GCNNNNNNNGC	3 cut(s)	385, 944, 2389
NcoI	CCATGG	1 cut(s)	1641
NdeI	CATATG	1 cut(s)	1243
NdeII	GATC	9 cut(s)	65, 408, 484, 587, 1330, 1338, 1531, 1873, 2176
NlaIV	GGNNCC	7 cut(s)	1719, 1745, 1771, 2291, 2392, 2635, 2691
NmuCI	GTSAC	1 cut(s)	41
NsiI	ATGCAT	4 cut(s)	1243, 1249, 1530, 1620
NspI	RCATGY	3 cut(s)	947, 1241, 2029
NspV	TTCGAA	1 cut(s)	1675
PaeI	GCATGC	1 cut(s)	947
PagI	TCATGA	1 cut(s)	1333
PceI	AGGCCT	1 cut(s)	854
PciI	ACATGT	1 cut(s)	2025
PciSI	GCTCTTC	1 cut(s)	540
PctI	GAATGC	1 cut(s)	887
PdmI	GAANNNNTTC	3 cut(s)	315, 1575, 2414
PfeI	GAWTC	7 cut(s)	251, 416, 509, 1474, 1655, 1672, 2734
PflMI	CCANNNNNTGG	1 cut(s)	523
PfoI	TCCNGGA	1 cut(s)	254
PkrI	GCNGC	7 cut(s)	205, 874, 1893, 2112, 2263, 2270, 2487
PleI	GAGTC	3 cut(s)	887, 997, 1941
PpsI	GAGTC	3 cut(s)	887, 997, 1941
PpuMI	RGGWCCY	1 cut(s)	1752
PscI	ACATGT	1 cut(s)	2025
PshBI	ATTAAT	2 cut(s)	1808, 2664
PsiI	TTATAA	1 cut(s)	2819
Psp5II	RGGWCCY	1 cut(s)	1752
Psp6I	CCWGG	4 cut(s)	254, 781, 854, 1224
PspEI	GGTNACC	1 cut(s)	1645
PspGI	CCWGG	4 cut(s)	254, 781, 854, 1224
PspN4I	GGNNCC	7 cut(s)	1719, 1745, 1771, 2291, 2392, 2635, 2691
PspOMI	GGGCCC	1 cut(s)	2390
PspPI	GGNCC	6 cut(s)	1752, 1769, 1915, 2289, 2390, 2391
PspPPI	RGGWCCY	1 cut(s)	1752
PstI	CTGCAG	1 cut(s)	2112
PsuI	RGATCY	3 cut(s)	65, 587, 1338
RsaI	GTAC	4 cut(s)	1131, 1719, 2475, 2686
RsaNI	GTAC	4 cut(s)	1130, 1718, 2474, 2685
RseI	CAYNNNNRTG	5 cut(s)	880, 948, 1067, 1242, 1605
SapI	GCTCTTC	1 cut(s)	540
SaqAI	TTAA	7 cut(s)	1164, 1292, 1512, 1808, 2141, 2664, 2839
SatI	GCNGC	7 cut(s)	204, 873, 1892, 2111, 2262, 2269, 2486
Sau3AI	GATC	9 cut(s)	65, 408, 484, 587, 1330, 1338, 1531, 1873, 2176
Sau96I	GGNCC	6 cut(s)	1752, 1769, 1915, 2289, 2390, 2391
SchI	GAGTC	3 cut(s)	887, 998, 1942
ScrFI	CCNGG	4 cut(s)	256, 783, 856, 1226
SduI	GDGCHC	4 cut(s)	103, 1746, 2277, 2394
SfaNI	GCATC	8 cut(s)	130, 190, 309, 559, 1256, 1515, 1627, 2248
SfcI	CTRYAG	2 cut(s)	2108, 2758
SfuI	TTCGAA	1 cut(s)	1675
SinI	GGWCC	3 cut(s)	1752, 1915, 2289
SmiMI	CAYNNNNRTG	5 cut(s)	880, 948, 1067, 1242, 1605
SmlI	CTYRAG	4 cut(s)	1921, 2453, 2720, 2768
SmoI	CTYRAG	4 cut(s)	1921, 2453, 2720, 2768
SphI	GCATGC	1 cut(s)	947
SseBI	AGGCCT	1 cut(s)	854
SspI	AATATT	1 cut(s)	1510
StuI	AGGCCT	1 cut(s)	854
StyD4I	CCNGG	4 cut(s)	254, 781, 854, 1224
StyI	CCWWGG	3 cut(s)	1641, 1972, 2081
TaaI	ACNGT	5 cut(s)	164, 1352, 2282, 2511, 2689
TaqI	TCGA	4 cut(s)	1675, 1876, 2153, 2234
TaqII	GACCGA	1 cut(s)	2277
TatI	WGTACW	1 cut(s)	1129
TauI	GCSGC	1 cut(s)	2264
TfiI	GAWTC	7 cut(s)	251, 416, 509, 1474, 1655, 1672, 2734
Tru1I	TTAA	7 cut(s)	1164, 1292, 1512, 1808, 2141, 2664, 2839
Tru9I	TTAA	7 cut(s)	1164, 1292, 1512, 1808, 2141, 2664, 2839
TscAI	CASTG	2 cut(s)	169, 418
TseFI	GTSAC	1 cut(s)	41
TseI	GCWGC	6 cut(s)	203, 872, 1891, 2110, 2268, 2485
Tsp45I	GTSAC	1 cut(s)	41
TspDTI	ATGAA	7 cut(s)	109, 534, 822, 903, 942, 1668, 2069
TspGWI	ACGGA	2 cut(s)	1997, 2820
TspRI	CASTG	2 cut(s)	169, 418
Van91I	CCANNNNNTGG	1 cut(s)	523
VneI	GTGCAC	1 cut(s)	99
VpaK11BI	GGWCC	3 cut(s)	1752, 1915, 2289
VspI	ATTAAT	2 cut(s)	1808, 2664
XagI	CCTNNNNNAGG	1 cut(s)	1971
XapI	RAATTY	3 cut(s)	760, 1573, 2143
XceI	RCATGY	3 cut(s)	947, 1241, 2029
XcmI	CCANNNNNNNNNTGG	2 cut(s)	524, 2831
XmaJI	CCTAGG	1 cut(s)	1972
XmiI	GTMKAC	1 cut(s)	1689
XmnI	GAANNNNTTC	3 cut(s)	315, 1575, 2414
Zsp2I	ATGCAT	4 cut(s)	1243, 1249, 1530, 1620

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.