FvH4_4g08041

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000169
Physical Location & Seq
Reverse (-)
7650945 .. 7652211
1267 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g08041.t1

Sequence Viewer

Length: 636 bp
ATGTCGTCCATTGACACCGTCACAAAGTCCTTCGCTACCTCCTTTACTTTGGTCGACGGCAGAAAAGCGCCGGATTTGGGGAAGATTGGAAGAGGTCTTCAGAATTTTCAAATTCAGGAGAGGGGTGACCCCTTCCTCGTCTCCTTCGAATCTATGAAGGATCAAGCAAAGGTTCTGAAGGGTGGCGCTTGGTGCTTTGACCGCGCACCGATTTTTCTTGAGGAGTATGATGGGATTACTCCTATGGCCGACGTTCCTCTTCGTCATGTGAGGATGTGGCTCTCCACTAGTTTGGCTATCAATCCAGCACCGGTGGTTTCCTCGTCTTCAGCAATGAAGAGAAAGCATGTGAATAAGGTTGTCTCTGAATTGGAGACATCTCCTATTGTGTTGGAAGTTGTTGCTAAGAAGGATGTGGTGTTGTCTACTCCCTCAAAGAAACGTGAACATAGTGGGGGAGGAAATGATGAGCTTCTTATGAACTTGAAGAAGAAGCTGGGTCGACCTTTGGGTAGCAGAAATAGGGTAAATCGGTCTACTAAGAAGACAGAGGTTCCTCTACGCATTAGCTACCCGGTTGCTGCCAAGGTGGGTGACAAGGCAAGCCCTAATGCCAAGGGCAAGGGCAAGACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00670 ko01100 ko01110 ko01130 ko01523 map00230 map00670 map01100 map01110 map01130 map01523
Pfam Domains
Protein Families
DDE_Tnp_1_7 DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

212

Amino Acids

23.05

Weight (kDa)

10.03

Isoelectric Point (pI)

39.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000169)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13681 FvH4_3g25832 FvH4_3g26062 FvH4_4g08041 FvH4_4g13361 FvH4_4g16721 FvH4_4g21881 FvH4_6g07632 FvH4_6g17062 FvH4_6g26370 FvH4_7g07641
rosa_chinensis RchiOBHm_Chr1g0320861 RchiOBHm_Chr2g0109251 RchiOBHm_Chr3g0472781 RchiOBHm_Chr6g0288921 RchiOBHm_Chr7g0191711 RchiOBHm_Chr7g0238801
rosa_laevigata RLG00000007550 RLG00000036731
rosa_multiflora Rmu_co8018808.1_g000001 Rmu_co8401665.1_g000001 Rmu_co8461051.1_g000001 Rmu_sc0000144.1_g000042 Rmu_sc0000144.1_g000051 Rmu_sc0000160.1_g000018 Rmu_sc0000245.1_g000011 Rmu_sc0000299.1_g000021 Rmu_sc0000348.1_g000003 Rmu_sc0000367.1_g000120 Rmu_sc0000424.1_g000037 Rmu_sc0000427.1_g000006 Rmu_sc0000427.1_g000023 Rmu_sc0000427.1_g000037 Rmu_sc0000604.1_g000005 Rmu_sc0000605.1_g000060 Rmu_sc0000621.1_g000030 Rmu_sc0000693.1_g000017 Rmu_sc0000708.1_g000012 Rmu_sc0000918.1_g000031 Rmu_sc0000953.1_g000027 Rmu_sc0001030.1_g000008 Rmu_sc0001030.1_g000011 Rmu_sc0001051.1_g000026 Rmu_sc0001055.1_g000001 Rmu_sc0001081.1_g000001 Rmu_sc0001175.1_g000002 Rmu_sc0001176.1_g000026 Rmu_sc0001181.1_g000010 Rmu_sc0001225.1_g000003 Rmu_sc0001371.1_g000008 Rmu_sc0001433.1_g000012 Rmu_sc0001507.1_g000009 Rmu_sc0001643.1_g000014 Rmu_sc0001879.1_g000002 Rmu_sc0001890.1_g000006 Rmu_sc0002129.1_g000039 Rmu_sc0002356.1_g000008 Rmu_sc0002358.1_g000003 Rmu_sc0002553.1_g000024 Rmu_sc0002826.1_g000007 Rmu_sc0002872.1_g000007 Rmu_sc0003323.1_g000026 Rmu_sc0003410.1_g000001 Rmu_sc0003511.1_g000042 Rmu_sc0003541.1_g000036 Rmu_sc0003605.1_g000048 Rmu_sc0003689.1_g000014 Rmu_sc0003692.1_g000010 Rmu_sc0003720.1_g000001 Rmu_sc0003813.1_g000003 Rmu_sc0003872.1_g000005 Rmu_sc0004010.1_g000012 Rmu_sc0004165.1_g000092 Rmu_sc0004230.1_g000013 Rmu_sc0004318.1_g000020 Rmu_sc0004353.1_g000004 Rmu_sc0004617.1_g000005 Rmu_sc0004617.1_g000006 Rmu_sc0004658.1_g000005 Rmu_sc0005356.1_g000008 Rmu_sc0005994.1_g000014 Rmu_sc0006388.1_g000004 Rmu_sc0006674.1_g000020 Rmu_sc0006898.1_g000008 Rmu_sc0007286.1_g000005 Rmu_sc0007476.1_g000002 Rmu_sc0007671.1_g000005 Rmu_sc0007991.1_g000008 Rmu_sc0008131.1_g000008 Rmu_sc0008163.1_g000011 Rmu_sc0008322.1_g000004 Rmu_sc0008334.1_g000017 Rmu_sc0008835.1_g000009 Rmu_sc0008835.1_g000011 Rmu_sc0009954.1_g000006 Rmu_sc0010050.1_g000001 Rmu_sc0010317.1_g000011 Rmu_sc0010426.1_g000002 Rmu_sc0011111.1_g000005 Rmu_sc0014614.1_g000003 Rmu_sc0014688.1_g000002 Rmu_sc0015167.1_g000003 Rmu_sc0015936.1_g000003 Rmu_sc0017323.1_g000003 Rmu_sc0018541.1_g000001 Rmu_sc0019370.1_g000003 Rmu_sc0020444.1_g000001 Rmu_sc0020600.1_g000003 Rmu_sc0021238.1_g000001 Rmu_sc0022909.1_g000001 Rmu_sc0030397.1_g000001 Rmu_sc0030484.1_g000002 Rmu_sc0035139.1_g000001 Rmu_sc0035719.1_g000001 Rmu_ssc0000287.1_g000010 Rmu_ssc0000451.1_g000005
rosa_roxburghii Rroxscaffold_1G00046590 Rroxscaffold_1G00050100 Rroxscaffold_2G00079390 Rroxscaffold_2G00088790 Rroxscaffold_2G00097170 Rroxscaffold_2G00126350 Rroxscaffold_3G00221550 Rroxscaffold_3G00222700 Rroxscaffold_3G00236390 Rroxscaffold_3G00254000 Rroxscaffold_3G00260090 Rroxscaffold_3G00263600 Rroxscaffold_5G00336900
rosa_rugosa Rorug01G0048200 Rorug01G0172000 Rorug01G0294000 Rorug01G0308200 Rorug01G0355300 Rorug02G0000900 Rorug02G0129600 Rorug02G0136800 Rorug02G0179700 Rorug02G0251500 Rorug02G0305800 Rorug02G0305900 Rorug02G0373800 Rorug02G0396100 Rorug02G0411300 Rorug02G0411400 Rorug02G0411500 Rorug02G0460200 Rorug03G0187400 Rorug03G0299000 Rorug04G0041700 Rorug04G0130800 Rorug04G0168300 Rorug04G0198700 Rorug05G0095100 Rorug05G0194100 Rorug05G0205300 Rorug05G0235300 Rorug06G0088100.1 Rorug06G0120100 Rorug06G0164300 Rorug07G0163600 Rorug07G0163700 Rorug07G0236200 Rorug07G0307200 RorugPtG0006100
rosa_samantha Rh1DG036900 Rh3BG176200 Rh4CG455100 Rh6AG142400 Rh6AG263000 Rh6CG138900 Rh6DG126200 Rh7CG393300 Rh7CG447500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 4 cut(s) 54, 425, 502, 536
AccII CGCG 1 cut(s) 204
AciI CCGC 1 cut(s) 202
AclWI GGATC 1 cut(s) 168
AcoI YGGCCR 1 cut(s) 246
AcsI RAATTY 2 cut(s) 103, 111
AcuI CTGAAG 3 cut(s) 83, 197, 312
AfiI CCNNNNNNNGG 1 cut(s) 77
AgeI ACCGGT 1 cut(s) 310
AgsI TTSAA 2 cut(s) 110, 487
AhlI ACTAGT 1 cut(s) 287
AluBI AGCT 3 cut(s) 472, 496, 570
AluI AGCT 3 cut(s) 472, 496, 570
Alw26I GTCTC 3 cut(s) 145, 367, 368
AlwI GGATC 1 cut(s) 168
AoxI GGCC 1 cut(s) 246
ApeKI GCWGC 1 cut(s) 581
ApoI RAATTY 2 cut(s) 103, 111
AsiGI ACCGGT 1 cut(s) 310
AspLEI GCGC 3 cut(s) 70, 188, 206
AsuC2I CCSGG 1 cut(s) 575
AsuHPI GGTGA 2 cut(s) 137, 605
AsuII TTCGAA 1 cut(s) 147
BbsI GAAGAC 3 cut(s) 89, 318, 551
BbvI GCAGC 1 cut(s) 568
BccI CCATC 1 cut(s) 224
BceAI ACGGC 1 cut(s) 73
BcnI CCSGG 1 cut(s) 575
BcoDI GTCTC 3 cut(s) 145, 367, 368
BcuI ACTAGT 1 cut(s) 287
BfaI CTAG 1 cut(s) 288
BfoI RGCGCY 2 cut(s) 71, 189
BisI GCNGC 1 cut(s) 582
BlsI GCNGC 1 cut(s) 583
Bme1390I CCNGG 1 cut(s) 575
BmiI GGNNCC 1 cut(s) 555
BmrFI CCNGG 1 cut(s) 575
BpiI GAAGAC 3 cut(s) 89, 318, 551
Bpu14I TTCGAA 1 cut(s) 147
BpuEI CTTGAG 1 cut(s) 239
BpuMI CCSGG 1 cut(s) 575
BsaJI CCNNGG 2 cut(s) 585, 615
BsaWI WCCGGW 1 cut(s) 310
Bsc4I CCNNNNNNNGG 1 cut(s) 77
Bse118I RCCGGY 1 cut(s) 310
Bse3DI GCAATG 1 cut(s) 339
BseDI CCNNGG 2 cut(s) 585, 615
BseGI GGATG 2 cut(s) 279, 418
BseLI CCNNNNNNNGG 1 cut(s) 77
BseMI GCAATG 1 cut(s) 339
BseRI GAGGAG 1 cut(s) 236
BseXI GCAGC 1 cut(s) 568
BseYI CCCAGC 1 cut(s) 496
Bsh1236I CGCG 1 cut(s) 204
BshFI GGCC 1 cut(s) 248
BshTI ACCGGT 1 cut(s) 310
BsiSI CCGG 3 cut(s) 71, 311, 575
BslI CCNNNNNNNGG 1 cut(s) 77
BsmAI GTCTC 3 cut(s) 145, 367, 368
BsmBI CGTCTC 1 cut(s) 145
BsnI GGCC 1 cut(s) 248
Bsp119I TTCGAA 1 cut(s) 147
Bsp143I GATC 1 cut(s) 160
BspACI CCGC 1 cut(s) 202
BspANI GGCC 1 cut(s) 248
BspFNI CGCG 1 cut(s) 204
BspLI GGNNCC 1 cut(s) 555
BspPI GGATC 1 cut(s) 168
BspT104I TTCGAA 1 cut(s) 147
BsrDI GCAATG 1 cut(s) 339
BsrFI RCCGGY 1 cut(s) 310
BssAI RCCGGY 1 cut(s) 310
BssECI CCNNGG 2 cut(s) 585, 615
BssMI GATC 1 cut(s) 160
BssT1I CCWWGG 2 cut(s) 585, 615
Bst4CI ACNGT 1 cut(s) 19
Bst6I CTCTTC 3 cut(s) 85, 264, 332
BstBI TTCGAA 1 cut(s) 147
BstC8I GCNNGC 1 cut(s) 604
BstDEI CTNAG 3 cut(s) 405, 540, 633
BstEII GGTNACC 1 cut(s) 125
BstF5I GGATG 2 cut(s) 279, 418
BstFNI CGCG 1 cut(s) 204
BstH2I RGCGCY 2 cut(s) 71, 189
BstHHI GCGC 3 cut(s) 70, 188, 206
BstKTI GATC 1 cut(s) 163
BstMAI GTCTC 3 cut(s) 145, 367, 368
BstMBI GATC 1 cut(s) 160
BstMWI GCNNNNNNNGC 2 cut(s) 192, 201
BstNSI RCATGY 1 cut(s) 350
BstPI GGTNACC 1 cut(s) 125
BstSCI CCNGG 1 cut(s) 573
BstUI CGCG 1 cut(s) 204
BstV1I GCAGC 1 cut(s) 568
BstV2I GAAGAC 3 cut(s) 89, 318, 551
BstXI CCANNNNNNTGG 1 cut(s) 292
BsuRI GGCC 1 cut(s) 248
BtsCI GGATG 2 cut(s) 279, 418
Cac8I GCNNGC 1 cut(s) 604
CfoI GCGC 3 cut(s) 70, 188, 206
Cfr10I RCCGGY 1 cut(s) 310
CspAI ACCGGT 1 cut(s) 310
CviAII CATG 2 cut(s) 266, 347
CviJI RGCY 7 cut(s) 248, 280, 296, 472, 496, 570, 606
CviKI_1 RGCY 7 cut(s) 248, 280, 296, 472, 496, 570, 606
DdeI CTNAG 3 cut(s) 405, 540, 633
DpnI GATC 1 cut(s) 162
DpnII GATC 1 cut(s) 160
EaeI YGGCCR 1 cut(s) 246
Eam1104I CTCTTC 3 cut(s) 85, 264, 332
EarI CTCTTC 3 cut(s) 85, 264, 332
Eco130I CCWWGG 2 cut(s) 585, 615
Eco57I CTGAAG 3 cut(s) 83, 197, 312
Eco91I GGTNACC 1 cut(s) 125
EcoO65I GGTNACC 1 cut(s) 125
EcoT14I CCWWGG 2 cut(s) 585, 615
ErhI CCWWGG 2 cut(s) 585, 615
Esp3I CGTCTC 1 cut(s) 145
FaeI CATG 2 cut(s) 269, 350
FaiI YATR 7 cut(s) 155, 228, 245, 267, 348, 450, 479
FatI CATG 2 cut(s) 265, 346
FblI GTMKAC 4 cut(s) 54, 425, 502, 536
Fnu4HI GCNGC 1 cut(s) 582
FokI GGATG 2 cut(s) 286, 425
Fsp4HI GCNGC 1 cut(s) 582
FspBI CTAG 1 cut(s) 288
GlaI GCGC 3 cut(s) 69, 187, 205
GluI GCNGC 1 cut(s) 582
GsaI CCCAGC 1 cut(s) 500
HaeII RGCGCY 2 cut(s) 71, 189
HaeIII GGCC 1 cut(s) 248
HapII CCGG 3 cut(s) 71, 311, 575
HhaI GCGC 3 cut(s) 70, 188, 206
Hin1II CATG 2 cut(s) 269, 350
Hin6I GCGC 3 cut(s) 68, 186, 204
HinP1I GCGC 3 cut(s) 68, 186, 204
HincII GTYRAC 2 cut(s) 55, 503
HindII GTYRAC 2 cut(s) 55, 503
HinfI GANTC 1 cut(s) 149
HpaII CCGG 3 cut(s) 71, 311, 575
HphI GGTGA 2 cut(s) 137, 605
Hpy166II GTNNAC 5 cut(s) 55, 426, 446, 503, 537
Hpy188I TCNGA 3 cut(s) 102, 177, 367
Hpy188III TCNNGA 2 cut(s) 116, 218
Hpy8I GTNNAC 5 cut(s) 55, 426, 446, 503, 537
Hpy99I CGWCG 2 cut(s) 59, 254
HpyAV CCTTC 6 cut(s) 40, 142, 151, 154, 172, 403
HpyCH4III ACNGT 1 cut(s) 19
HpyCH4IV ACGT 2 cut(s) 252, 442
HpyF10VI GCNNNNNNNGC 2 cut(s) 192, 201
HpyF3I CTNAG 3 cut(s) 405, 540, 633
HpySE526I ACGT 2 cut(s) 252, 442
Hsp92II CATG 2 cut(s) 269, 350
HspAI GCGC 3 cut(s) 68, 186, 204
Kzo9I GATC 1 cut(s) 160
LpnPI CCDG 6 cut(s) 84, 101, 318, 324, 482, 588
Lsp1109I GCAGC 1 cut(s) 568
MaeI CTAG 1 cut(s) 288
MaeII ACGT 2 cut(s) 252, 442
MaeIII GTNAC 3 cut(s) 19, 125, 593
MalI GATC 1 cut(s) 162
MboI GATC 1 cut(s) 160
MboII GAAGA 9 cut(s) 89, 94, 102, 251, 318, 349, 499, 502, 556
MluCI AATT 3 cut(s) 103, 111, 368
MmeI TCCRAC 1 cut(s) 372
MspI CCGG 3 cut(s) 71, 311, 575
MspR9I CCNGG 1 cut(s) 575
MvnI CGCG 1 cut(s) 204
MwoI GCNNNNNNNGC 2 cut(s) 192, 201
NciI CCSGG 1 cut(s) 575
NdeII GATC 1 cut(s) 160
NlaIII CATG 2 cut(s) 269, 350
NlaIV GGNNCC 1 cut(s) 555
NmuCI GTSAC 3 cut(s) 19, 125, 593
NspI RCATGY 1 cut(s) 350
NspV TTCGAA 1 cut(s) 147
PcsI WCGNNNNNNNCGW 1 cut(s) 144
PfeI GAWTC 1 cut(s) 149
PflFI GACNNNGTC 1 cut(s) 17
PinAI ACCGGT 1 cut(s) 310
PkrI GCNGC 1 cut(s) 583
PspEI GGTNACC 1 cut(s) 125
PspFI CCCAGC 1 cut(s) 496
PspN4I GGNNCC 1 cut(s) 555
PsyI GACNNNGTC 1 cut(s) 17
SalI GTCGAC 2 cut(s) 53, 501
SatI GCNGC 1 cut(s) 582
Sau3AI GATC 1 cut(s) 160
ScrFI CCNGG 1 cut(s) 575
SfuI TTCGAA 1 cut(s) 147
SgrAI CRCCGGYG 1 cut(s) 310
SmlI CTYRAG 1 cut(s) 218
SmoI CTYRAG 1 cut(s) 218
SpeI ACTAGT 1 cut(s) 287
Sse9I AATT 3 cut(s) 103, 111, 368
SsiI CCGC 1 cut(s) 202
SspMI CTAG 1 cut(s) 288
StyD4I CCNGG 1 cut(s) 573
StyI CCWWGG 2 cut(s) 585, 615
TaaI ACNGT 1 cut(s) 19
TaiI ACGT 2 cut(s) 255, 445
TaqI TCGA 3 cut(s) 54, 147, 502
TaqII GACCGA 1 cut(s) 522
TasI AATT 3 cut(s) 103, 111, 368
TfiI GAWTC 1 cut(s) 149
TseFI GTSAC 3 cut(s) 19, 125, 593
TseI GCWGC 1 cut(s) 581
Tsp45I GTSAC 3 cut(s) 19, 125, 593
TspDTI ATGAA 3 cut(s) 170, 350, 494
Tth111I GACNNNGTC 1 cut(s) 17
XapI RAATTY 2 cut(s) 103, 111
XceI RCATGY 1 cut(s) 350
XmiI GTMKAC 4 cut(s) 54, 425, 502, 536
XspI CTAG 1 cut(s) 288
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.