FvH4_2g13681

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000169
Physical Location & Seq
Forward (+)
11960060 .. 11961130
1071 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g13681.t1

Sequence Viewer

Length: 786 bp
ATGGCCTTTGATGTCGTAACTGCCAGTTTTGCAACCTCTTTGTCTCTCGCTGACAGAGGAAAAGCTTCAGATCTTAAAAAGATCGGTGGGGGACCTGTCCAACGATCACCATATGCCTTCCTACTAGGCAAACGTCTCACTCGTCACCTTGTGGATATGGCTGCTTTCAAGTCTCATTTCCTCCAAACCTGGTTGGTGGATCGTCAGTTTAGGGTTCAGGAGAGGGATGAAAACTTGTTCCTCTTCTCCTTCGACTCTGTCTACGATCGACATAAGGATGGTGTGGATCATTTTCTGAAATTCTCCTACGATCATTTGAAAGGTCATTGCTATCTCTATGGTCTTATTACCCATGCAGGTGTTTGCTGTGAAGAACCACCTTTGGTGAATCAAACAAGGGCTAGAGTTTTGGGGTATGCTAGATATCACAACTCTGTTTTTTCTGCTAGGGCTTCATTTGAACCATTACTGCAGTCTCCTGGTCCTTCATCTTCTCTGGCTCCCAAGAAGAAGAAATCAGTGGTTATCAAGAAGAGATCAACATCTGAAGATTTTGTACTCGACTTGGTCATATCTGACAGTGGTGCAAAGGATCTGGAGCACAACTTTATAGTTTCTGCTAAAGATGAAGAACATGGTTCTACTTCTGACCCAATTGTGCCAACGCTACCGGAACTAGAGGTGGCTCCACAAAGTGAGGAAGTTGTGTCAACTCCTTCTCGGAAACGAGGACGTGATAGAGGTATGACTCCCTCCCCAGAAAAATTCAAGACTATTTTGGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

262

Amino Acids

29.14

Weight (kDa)

8.86

Isoelectric Point (pI)

47.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000169)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13681 FvH4_3g25832 FvH4_3g26062 FvH4_4g08041 FvH4_4g13361 FvH4_4g16721 FvH4_4g21881 FvH4_6g07632 FvH4_6g17062 FvH4_6g26370 FvH4_7g07641
rosa_chinensis RchiOBHm_Chr1g0320861 RchiOBHm_Chr2g0109251 RchiOBHm_Chr3g0472781 RchiOBHm_Chr6g0288921 RchiOBHm_Chr7g0191711 RchiOBHm_Chr7g0238801
rosa_laevigata RLG00000007550 RLG00000036731
rosa_multiflora Rmu_co8018808.1_g000001 Rmu_co8401665.1_g000001 Rmu_co8461051.1_g000001 Rmu_sc0000144.1_g000042 Rmu_sc0000144.1_g000051 Rmu_sc0000160.1_g000018 Rmu_sc0000245.1_g000011 Rmu_sc0000299.1_g000021 Rmu_sc0000348.1_g000003 Rmu_sc0000367.1_g000120 Rmu_sc0000424.1_g000037 Rmu_sc0000427.1_g000006 Rmu_sc0000427.1_g000023 Rmu_sc0000427.1_g000037 Rmu_sc0000604.1_g000005 Rmu_sc0000605.1_g000060 Rmu_sc0000621.1_g000030 Rmu_sc0000693.1_g000017 Rmu_sc0000708.1_g000012 Rmu_sc0000918.1_g000031 Rmu_sc0000953.1_g000027 Rmu_sc0001030.1_g000008 Rmu_sc0001030.1_g000011 Rmu_sc0001051.1_g000026 Rmu_sc0001055.1_g000001 Rmu_sc0001081.1_g000001 Rmu_sc0001175.1_g000002 Rmu_sc0001176.1_g000026 Rmu_sc0001181.1_g000010 Rmu_sc0001225.1_g000003 Rmu_sc0001371.1_g000008 Rmu_sc0001433.1_g000012 Rmu_sc0001507.1_g000009 Rmu_sc0001643.1_g000014 Rmu_sc0001879.1_g000002 Rmu_sc0001890.1_g000006 Rmu_sc0002129.1_g000039 Rmu_sc0002356.1_g000008 Rmu_sc0002358.1_g000003 Rmu_sc0002553.1_g000024 Rmu_sc0002826.1_g000007 Rmu_sc0002872.1_g000007 Rmu_sc0003323.1_g000026 Rmu_sc0003410.1_g000001 Rmu_sc0003511.1_g000042 Rmu_sc0003541.1_g000036 Rmu_sc0003605.1_g000048 Rmu_sc0003689.1_g000014 Rmu_sc0003692.1_g000010 Rmu_sc0003720.1_g000001 Rmu_sc0003813.1_g000003 Rmu_sc0003872.1_g000005 Rmu_sc0004010.1_g000012 Rmu_sc0004165.1_g000092 Rmu_sc0004230.1_g000013 Rmu_sc0004318.1_g000020 Rmu_sc0004353.1_g000004 Rmu_sc0004617.1_g000005 Rmu_sc0004617.1_g000006 Rmu_sc0004658.1_g000005 Rmu_sc0005356.1_g000008 Rmu_sc0005994.1_g000014 Rmu_sc0006388.1_g000004 Rmu_sc0006674.1_g000020 Rmu_sc0006898.1_g000008 Rmu_sc0007286.1_g000005 Rmu_sc0007476.1_g000002 Rmu_sc0007671.1_g000005 Rmu_sc0007991.1_g000008 Rmu_sc0008131.1_g000008 Rmu_sc0008163.1_g000011 Rmu_sc0008322.1_g000004 Rmu_sc0008334.1_g000017 Rmu_sc0008835.1_g000009 Rmu_sc0008835.1_g000011 Rmu_sc0009954.1_g000006 Rmu_sc0010050.1_g000001 Rmu_sc0010317.1_g000011 Rmu_sc0010426.1_g000002 Rmu_sc0011111.1_g000005 Rmu_sc0014614.1_g000003 Rmu_sc0014688.1_g000002 Rmu_sc0015167.1_g000003 Rmu_sc0015936.1_g000003 Rmu_sc0017323.1_g000003 Rmu_sc0018541.1_g000001 Rmu_sc0019370.1_g000003 Rmu_sc0020444.1_g000001 Rmu_sc0020600.1_g000003 Rmu_sc0021238.1_g000001 Rmu_sc0022909.1_g000001 Rmu_sc0030397.1_g000001 Rmu_sc0030484.1_g000002 Rmu_sc0035139.1_g000001 Rmu_sc0035719.1_g000001 Rmu_ssc0000287.1_g000010 Rmu_ssc0000451.1_g000005
rosa_roxburghii Rroxscaffold_1G00046590 Rroxscaffold_1G00050100 Rroxscaffold_2G00079390 Rroxscaffold_2G00088790 Rroxscaffold_2G00097170 Rroxscaffold_2G00126350 Rroxscaffold_3G00221550 Rroxscaffold_3G00222700 Rroxscaffold_3G00236390 Rroxscaffold_3G00254000 Rroxscaffold_3G00260090 Rroxscaffold_3G00263600 Rroxscaffold_5G00336900
rosa_rugosa Rorug01G0048200 Rorug01G0172000 Rorug01G0294000 Rorug01G0308200 Rorug01G0355300 Rorug02G0000900 Rorug02G0129600 Rorug02G0136800 Rorug02G0179700 Rorug02G0251500 Rorug02G0305800 Rorug02G0305900 Rorug02G0373800 Rorug02G0396100 Rorug02G0411300 Rorug02G0411400 Rorug02G0411500 Rorug02G0460200 Rorug03G0187400 Rorug03G0299000 Rorug04G0041700 Rorug04G0130800 Rorug04G0168300 Rorug04G0198700 Rorug05G0095100 Rorug05G0194100 Rorug05G0205300 Rorug05G0235300 Rorug06G0088100.1 Rorug06G0120100 Rorug06G0164300 Rorug07G0163600 Rorug07G0163700 Rorug07G0236200 Rorug07G0307200 RorugPtG0006100
rosa_samantha Rh1DG036900 Rh3BG176200 Rh4CG455100 Rh6AG142400 Rh6AG263000 Rh6CG138900 Rh6DG126200 Rh7CG393300 Rh7CG447500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 347
Acc36I ACCTGC 1 cut(s) 347
AccI GTMKAC 1 cut(s) 261
AclWI GGATC 3 cut(s) 207, 294, 600
AcsI RAATTY 2 cut(s) 299, 764
AcuI CTGAAG 2 cut(s) 51, 567
AdeI CACNNNGTG 2 cut(s) 151, 695
AfaI GTAC 1 cut(s) 558
AgsI TTSAA 4 cut(s) 169, 319, 461, 769
AjiI CACGTC 1 cut(s) 734
AjnI CCWGG 2 cut(s) 188, 478
AluBI AGCT 1 cut(s) 65
AluI AGCT 1 cut(s) 65
Alw21I GWGCWC 1 cut(s) 603
Alw26I GTCTC 4 cut(s) 48, 140, 177, 480
AlwI GGATC 3 cut(s) 207, 294, 600
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 1 cut(s) 161
ApoI RAATTY 2 cut(s) 299, 764
Asp700I GAANNNNTTC 1 cut(s) 64
AspS9I GGNCC 2 cut(s) 92, 482
AsuHPI GGTGA 3 cut(s) 99, 137, 397
AvaII GGWCC 2 cut(s) 92, 482
BarI GAAGNNNNNNTAC 2 cut(s) 540, 572
Bbv12I GWGCWC 1 cut(s) 603
BbvI GCAGC 1 cut(s) 148
BccI CCATC 1 cut(s) 272
BciT130I CCWGG 2 cut(s) 190, 480
BcoDI GTCTC 4 cut(s) 48, 140, 177, 480
BfaI CTAG 5 cut(s) 125, 402, 420, 447, 677
BfmI CTRYAG 1 cut(s) 470
BfuAI ACCTGC 1 cut(s) 347
BglII AGATCT 1 cut(s) 70
BisI GCNGC 1 cut(s) 162
BlsI GCNGC 1 cut(s) 163
Bme1390I CCNGG 2 cut(s) 190, 480
Bme18I GGWCC 2 cut(s) 92, 482
BmgBI CACGTC 1 cut(s) 734
BmgT120I GGNCC 2 cut(s) 92, 482
BmiI GGNNCC 3 cut(s) 93, 501, 687
BmrFI CCNGG 2 cut(s) 190, 480
BpmI CTGGAG 1 cut(s) 617
BsaBI GATNNNNATC 1 cut(s) 541
BsaWI WCCGGW 1 cut(s) 670
Bse1I ACTGG 1 cut(s) 24
Bse3DI GCAATG 1 cut(s) 325
Bse8I GATNNNNATC 1 cut(s) 541
BseBI CCWGG 2 cut(s) 190, 480
BseGI GGATG 2 cut(s) 232, 283
BseJI GATNNNNATC 1 cut(s) 541
BseMI GCAATG 1 cut(s) 325
BseNI ACTGG 1 cut(s) 24
BseXI GCAGC 1 cut(s) 148
Bsh1285I CGRYCG 1 cut(s) 268
BshFI GGCC 1 cut(s) 5
BsiEI CGRYCG 1 cut(s) 268
BsiHKAI GWGCWC 1 cut(s) 603
BsiSI CCGG 1 cut(s) 671
BslFI GGGAC 1 cut(s) 105
BsmAI GTCTC 4 cut(s) 48, 140, 177, 480
BsmBI CGTCTC 1 cut(s) 140
BsmFI GGGAC 1 cut(s) 105
BsnI GGCC 1 cut(s) 5
Bsp1286I GDGCHC 1 cut(s) 603
Bsp143I GATC 9 cut(s) 70, 81, 104, 199, 265, 286, 310, 536, 592
BspANI GGCC 1 cut(s) 5
BspLI GGNNCC 3 cut(s) 93, 501, 687
BspMAI CTGCAG 1 cut(s) 474
BspMI ACCTGC 1 cut(s) 347
BspPI GGATC 3 cut(s) 207, 294, 600
BsrDI GCAATG 1 cut(s) 325
BsrI ACTGG 1 cut(s) 24
BssMI GATC 9 cut(s) 70, 81, 104, 199, 265, 286, 310, 536, 592
Bst2UI CCWGG 2 cut(s) 190, 480
Bst4CI ACNGT 1 cut(s) 581
Bst6I CTCTTC 2 cut(s) 248, 527
BstF5I GGATG 2 cut(s) 232, 283
BstKTI GATC 9 cut(s) 73, 84, 107, 202, 268, 289, 313, 539, 595
BstMAI GTCTC 4 cut(s) 48, 140, 177, 480
BstMBI GATC 9 cut(s) 70, 81, 104, 199, 265, 286, 310, 536, 592
BstMCI CGRYCG 1 cut(s) 268
BstMWI GCNNNNNNNGC 1 cut(s) 29
BstNI CCWGG 2 cut(s) 190, 480
BstSCI CCNGG 2 cut(s) 188, 478
BstSFI CTRYAG 1 cut(s) 470
BstV1I GCAGC 1 cut(s) 148
BstX2I RGATCY 2 cut(s) 70, 592
BstYI RGATCY 2 cut(s) 70, 592
BsuRI GGCC 1 cut(s) 5
BtrI CACGTC 1 cut(s) 734
BtsCI GGATG 2 cut(s) 232, 283
BtsIMutI CAGTG 2 cut(s) 525, 586
BveI ACCTGC 1 cut(s) 347
Cfr13I GGNCC 2 cut(s) 92, 482
CsiI ACCWGGT 1 cut(s) 188
Csp6I GTAC 1 cut(s) 557
CviAII CATG 2 cut(s) 353, 635
CviJI RGCY 7 cut(s) 5, 65, 161, 401, 452, 500, 686
CviKI_1 RGCY 7 cut(s) 5, 65, 161, 401, 452, 500, 686
CviQI GTAC 1 cut(s) 557
DpnI GATC 9 cut(s) 72, 83, 106, 201, 267, 288, 312, 538, 594
DpnII GATC 9 cut(s) 70, 81, 104, 199, 265, 286, 310, 536, 592
DraIII CACNNNGTG 2 cut(s) 151, 695
Eam1104I CTCTTC 2 cut(s) 248, 527
EarI CTCTTC 2 cut(s) 248, 527
Eco32I GATATC 1 cut(s) 425
Eco47I GGWCC 2 cut(s) 92, 482
Eco57I CTGAAG 2 cut(s) 51, 567
EcoO109I RGGNCCY 1 cut(s) 92
EcoRII CCWGG 2 cut(s) 188, 478
EcoRV GATATC 1 cut(s) 425
Esp3I CGTCTC 1 cut(s) 140
FaeI CATG 2 cut(s) 356, 638
FaqI GGGAC 1 cut(s) 105
FatI CATG 2 cut(s) 352, 634
FauNDI CATATG 1 cut(s) 112
FblI GTMKAC 1 cut(s) 261
Fnu4HI GCNGC 1 cut(s) 162
FokI GGATG 2 cut(s) 239, 290
Fsp4HI GCNGC 1 cut(s) 162
FspBI CTAG 5 cut(s) 125, 402, 420, 447, 677
GluI GCNGC 1 cut(s) 162
GsuI CTGGAG 1 cut(s) 617
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 671
Hin1II CATG 2 cut(s) 356, 638
HincII GTYRAC 1 cut(s) 711
HindII GTYRAC 1 cut(s) 711
HindIII AAGCTT 1 cut(s) 63
HinfI GANTC 3 cut(s) 254, 388, 748
HpaII CCGG 1 cut(s) 671
HphI GGTGA 3 cut(s) 99, 137, 397
Hpy166II GTNNAC 2 cut(s) 262, 711
Hpy188I TCNGA 6 cut(s) 70, 297, 547, 577, 649, 723
Hpy188III TCNNGA 4 cut(s) 218, 529, 596, 769
Hpy8I GTNNAC 2 cut(s) 262, 711
HpyAV CCTTC 4 cut(s) 127, 259, 495, 726
HpyCH4III ACNGT 1 cut(s) 581
HpyCH4IV ACGT 2 cut(s) 133, 733
HpyCH4V TGCA 4 cut(s) 32, 356, 472, 587
HpyF10VI GCNNNNNNNGC 1 cut(s) 29
HpySE526I ACGT 2 cut(s) 133, 733
Hsp92II CATG 2 cut(s) 356, 638
Kzo9I GATC 9 cut(s) 70, 81, 104, 199, 265, 286, 310, 536, 592
LmnI GCTCC 3 cut(s) 505, 598, 691
Lsp1109I GCAGC 1 cut(s) 148
MabI ACCWGGT 1 cut(s) 188
MaeI CTAG 5 cut(s) 125, 402, 420, 447, 677
MaeII ACGT 2 cut(s) 133, 733
MaeIII GTNAC 2 cut(s) 16, 143
MalI GATC 9 cut(s) 72, 83, 106, 201, 267, 288, 312, 538, 594
MboI GATC 9 cut(s) 70, 81, 104, 199, 265, 286, 310, 536, 592
MboII GAAGA 8 cut(s) 235, 383, 483, 520, 523, 544, 560, 641
MfeI CAATTG 1 cut(s) 654
MflI RGATCY 2 cut(s) 70, 592
MhlI GDGCHC 1 cut(s) 603
MluCI AATT 3 cut(s) 299, 654, 764
MlyI GAGTC 2 cut(s) 248, 742
MmeI TCCRAC 1 cut(s) 124
MroXI GAANNNNTTC 1 cut(s) 64
MseI TTAA 1 cut(s) 75
MslI CAYNNNNRTG 2 cut(s) 276, 357
MspI CCGG 1 cut(s) 671
MspR9I CCNGG 2 cut(s) 190, 480
MunI CAATTG 1 cut(s) 654
MvaI CCWGG 2 cut(s) 190, 480
MwoI GCNNNNNNNGC 1 cut(s) 29
NdeI CATATG 1 cut(s) 112
NdeII GATC 9 cut(s) 70, 81, 104, 199, 265, 286, 310, 536, 592
NlaIII CATG 2 cut(s) 356, 638
NlaIV GGNNCC 3 cut(s) 93, 501, 687
NmuCI GTSAC 1 cut(s) 143
PaqCI CACCTGC 1 cut(s) 347
PcsI WCGNNNNNNNCGW 1 cut(s) 139
PdmI GAANNNNTTC 1 cut(s) 64
PfeI GAWTC 1 cut(s) 388
PflFI GACNNNGTC 2 cut(s) 257, 566
PkrI GCNGC 1 cut(s) 163
Ple19I CGATCG 1 cut(s) 268
PleI GAGTC 2 cut(s) 248, 742
PpsI GAGTC 2 cut(s) 248, 742
PpuMI RGGWCCY 1 cut(s) 92
Psp5II RGGWCCY 1 cut(s) 92
Psp6I CCWGG 2 cut(s) 188, 478
PspGI CCWGG 2 cut(s) 188, 478
PspN4I GGNNCC 3 cut(s) 93, 501, 687
PspPI GGNCC 2 cut(s) 92, 482
PspPPI RGGWCCY 1 cut(s) 92
PstI CTGCAG 1 cut(s) 474
PsuI RGATCY 2 cut(s) 70, 592
PsyI GACNNNGTC 2 cut(s) 257, 566
PvuI CGATCG 1 cut(s) 268
RsaI GTAC 1 cut(s) 558
RsaNI GTAC 1 cut(s) 557
RseI CAYNNNNRTG 2 cut(s) 276, 357
SaqAI TTAA 1 cut(s) 75
SatI GCNGC 1 cut(s) 162
Sau3AI GATC 9 cut(s) 70, 81, 104, 199, 265, 286, 310, 536, 592
Sau96I GGNCC 2 cut(s) 92, 482
SchI GAGTC 2 cut(s) 248, 742
ScrFI CCNGG 2 cut(s) 190, 480
SduI GDGCHC 1 cut(s) 603
SexAI ACCWGGT 1 cut(s) 188
SfcI CTRYAG 1 cut(s) 470
SinI GGWCC 2 cut(s) 92, 482
SmiMI CAYNNNNRTG 2 cut(s) 276, 357
Sse9I AATT 3 cut(s) 299, 654, 764
SspMI CTAG 5 cut(s) 125, 402, 420, 447, 677
StyD4I CCNGG 2 cut(s) 188, 478
TaaI ACNGT 1 cut(s) 581
TaiI ACGT 2 cut(s) 136, 736
TaqI TCGA 3 cut(s) 252, 268, 561
TasI AATT 3 cut(s) 299, 654, 764
TatI WGTACW 1 cut(s) 556
TfiI GAWTC 1 cut(s) 388
Tru1I TTAA 1 cut(s) 75
Tru9I TTAA 1 cut(s) 75
TscAI CASTG 2 cut(s) 525, 586
TseFI GTSAC 1 cut(s) 143
TseI GCWGC 1 cut(s) 161
Tsp45I GTSAC 1 cut(s) 143
TspDTI ATGAA 4 cut(s) 243, 444, 477, 642
TspRI CASTG 2 cut(s) 525, 586
Tth111I GACNNNGTC 2 cut(s) 257, 566
VpaK11BI GGWCC 2 cut(s) 92, 482
XapI RAATTY 2 cut(s) 299, 764
XmiI GTMKAC 1 cut(s) 261
XmnI GAANNNNTTC 1 cut(s) 64
XspI CTAG 5 cut(s) 125, 402, 420, 447, 677
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.