Rorug05G0095100

No description available

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Reverse (-)
8461747 .. 8462166
420 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0095100.1

Sequence Viewer

Length: 420 bp
ATGTATTCGAGGAAAAAGGGGCACCACATATTGAAGGAAGGCAAGGGTTTCCAAGCATTACTTGCAGCAGAAAAGAGGAGGATGATCTATCTTCATCCCATCACTCCAAGGCCAAGTGAGGAAGAAAAGAAGAAGTCAGAAAGTGTAGAAAACAGGAAGACAGAAAAAGAAGAAAAGAAAAGGAGTTTTCTGAAGTGGCTGATTGATCCAGGAGAGTTTGCTACCTGGAGTAGGTCTCAAGCTGGATACCAAGGCATCGCAAGGGAAGTGAAGGAAATTCGCTACCTTCAGTTCCAGTGCGATGCCCAGTCTCCAGCTTCACCAATCACATTCTCGTCAGCAAAACCATTAGTAGCATCCTCAAGTATCTCTGAGAGCGTACCAATGTCCCCTCCCCTCCGGCACAGTGATCAATTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

139

Amino Acids

15.94

Weight (kDa)

9.68

Isoelectric Point (pI)

77.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000169)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13681 FvH4_3g25832 FvH4_3g26062 FvH4_4g08041 FvH4_4g13361 FvH4_4g16721 FvH4_4g21881 FvH4_6g07632 FvH4_6g17062 FvH4_6g26370 FvH4_7g07641
rosa_chinensis RchiOBHm_Chr1g0320861 RchiOBHm_Chr2g0109251 RchiOBHm_Chr3g0472781 RchiOBHm_Chr6g0288921 RchiOBHm_Chr7g0191711 RchiOBHm_Chr7g0238801
rosa_laevigata RLG00000007550 RLG00000036731
rosa_multiflora Rmu_co8018808.1_g000001 Rmu_co8401665.1_g000001 Rmu_co8461051.1_g000001 Rmu_sc0000144.1_g000042 Rmu_sc0000144.1_g000051 Rmu_sc0000160.1_g000018 Rmu_sc0000245.1_g000011 Rmu_sc0000299.1_g000021 Rmu_sc0000348.1_g000003 Rmu_sc0000367.1_g000120 Rmu_sc0000424.1_g000037 Rmu_sc0000427.1_g000006 Rmu_sc0000427.1_g000023 Rmu_sc0000427.1_g000037 Rmu_sc0000604.1_g000005 Rmu_sc0000605.1_g000060 Rmu_sc0000621.1_g000030 Rmu_sc0000693.1_g000017 Rmu_sc0000708.1_g000012 Rmu_sc0000918.1_g000031 Rmu_sc0000953.1_g000027 Rmu_sc0001030.1_g000008 Rmu_sc0001030.1_g000011 Rmu_sc0001051.1_g000026 Rmu_sc0001055.1_g000001 Rmu_sc0001081.1_g000001 Rmu_sc0001175.1_g000002 Rmu_sc0001176.1_g000026 Rmu_sc0001181.1_g000010 Rmu_sc0001225.1_g000003 Rmu_sc0001371.1_g000008 Rmu_sc0001433.1_g000012 Rmu_sc0001507.1_g000009 Rmu_sc0001643.1_g000014 Rmu_sc0001879.1_g000002 Rmu_sc0001890.1_g000006 Rmu_sc0002129.1_g000039 Rmu_sc0002356.1_g000008 Rmu_sc0002358.1_g000003 Rmu_sc0002553.1_g000024 Rmu_sc0002826.1_g000007 Rmu_sc0002872.1_g000007 Rmu_sc0003323.1_g000026 Rmu_sc0003410.1_g000001 Rmu_sc0003511.1_g000042 Rmu_sc0003541.1_g000036 Rmu_sc0003605.1_g000048 Rmu_sc0003689.1_g000014 Rmu_sc0003692.1_g000010 Rmu_sc0003720.1_g000001 Rmu_sc0003813.1_g000003 Rmu_sc0003872.1_g000005 Rmu_sc0004010.1_g000012 Rmu_sc0004165.1_g000092 Rmu_sc0004230.1_g000013 Rmu_sc0004318.1_g000020 Rmu_sc0004353.1_g000004 Rmu_sc0004617.1_g000005 Rmu_sc0004617.1_g000006 Rmu_sc0004658.1_g000005 Rmu_sc0005356.1_g000008 Rmu_sc0005994.1_g000014 Rmu_sc0006388.1_g000004 Rmu_sc0006674.1_g000020 Rmu_sc0006898.1_g000008 Rmu_sc0007286.1_g000005 Rmu_sc0007476.1_g000002 Rmu_sc0007671.1_g000005 Rmu_sc0007991.1_g000008 Rmu_sc0008131.1_g000008 Rmu_sc0008163.1_g000011 Rmu_sc0008322.1_g000004 Rmu_sc0008334.1_g000017 Rmu_sc0008835.1_g000009 Rmu_sc0008835.1_g000011 Rmu_sc0009954.1_g000006 Rmu_sc0010050.1_g000001 Rmu_sc0010317.1_g000011 Rmu_sc0010426.1_g000002 Rmu_sc0011111.1_g000005 Rmu_sc0014614.1_g000003 Rmu_sc0014688.1_g000002 Rmu_sc0015167.1_g000003 Rmu_sc0015936.1_g000003 Rmu_sc0017323.1_g000003 Rmu_sc0018541.1_g000001 Rmu_sc0019370.1_g000003 Rmu_sc0020444.1_g000001 Rmu_sc0020600.1_g000003 Rmu_sc0021238.1_g000001 Rmu_sc0022909.1_g000001 Rmu_sc0030397.1_g000001 Rmu_sc0030484.1_g000002 Rmu_sc0035139.1_g000001 Rmu_sc0035719.1_g000001 Rmu_ssc0000287.1_g000010 Rmu_ssc0000451.1_g000005
rosa_roxburghii Rroxscaffold_1G00046590 Rroxscaffold_1G00050100 Rroxscaffold_2G00079390 Rroxscaffold_2G00088790 Rroxscaffold_2G00097170 Rroxscaffold_2G00126350 Rroxscaffold_3G00221550 Rroxscaffold_3G00222700 Rroxscaffold_3G00236390 Rroxscaffold_3G00254000 Rroxscaffold_3G00260090 Rroxscaffold_3G00263600 Rroxscaffold_5G00336900
rosa_rugosa Rorug01G0048200 Rorug01G0172000 Rorug01G0294000 Rorug01G0308200 Rorug01G0355300 Rorug02G0000900 Rorug02G0129600 Rorug02G0136800 Rorug02G0179700 Rorug02G0251500 Rorug02G0305800 Rorug02G0305900 Rorug02G0373800 Rorug02G0396100 Rorug02G0411300 Rorug02G0411400 Rorug02G0411500 Rorug02G0460200 Rorug03G0187400 Rorug03G0299000 Rorug04G0041700 Rorug04G0130800 Rorug04G0168300 Rorug04G0198700 Rorug05G0095100 Rorug05G0194100 Rorug05G0205300 Rorug05G0235300 Rorug06G0088100.1 Rorug06G0120100 Rorug06G0164300 Rorug07G0163600 Rorug07G0163700 Rorug07G0236200 Rorug07G0307200 RorugPtG0006100
rosa_samantha Rh1DG036900 Rh3BG176200 Rh4CG455100 Rh6AG142400 Rh6AG263000 Rh6CG138900 Rh6DG126200 Rh7CG393300 Rh7CG447500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 21
AclWI GGATC 1 cut(s) 200
AcsI RAATTY 1 cut(s) 276
AcuI CTGAAG 2 cut(s) 212, 272
AfaI GTAC 1 cut(s) 381
AfiI CCNNNNNNNGG 1 cut(s) 231
AgsI TTSAA 1 cut(s) 34
AjnI CCWGG 2 cut(s) 208, 224
AluBI AGCT 2 cut(s) 242, 317
AluI AGCT 2 cut(s) 242, 317
Alw26I GTCTC 2 cut(s) 240, 315
AlwI GGATC 1 cut(s) 200
AoxI GGCC 1 cut(s) 110
ApeKI GCWGC 1 cut(s) 65
ApoI RAATTY 1 cut(s) 276
AsuHPI GGTGA 1 cut(s) 312
BaeGI GKGCMC 1 cut(s) 24
BanI GGYRCC 1 cut(s) 21
BbsI GAAGAC 1 cut(s) 164
BbvI GCAGC 1 cut(s) 77
BccI CCATC 1 cut(s) 107
BciT130I CCWGG 2 cut(s) 210, 226
BciVI GTATCC 1 cut(s) 239
BclI TGATCA 1 cut(s) 409
BcoDI GTCTC 2 cut(s) 240, 315
BfuI GTATCC 1 cut(s) 239
BisI GCNGC 1 cut(s) 66
BlsI GCNGC 1 cut(s) 67
Bme1390I CCNGG 2 cut(s) 210, 226
BmiI GGNNCC 1 cut(s) 23
BmrFI CCNGG 2 cut(s) 210, 226
BmrI ACTGGG 1 cut(s) 301
BmsI GCATC 3 cut(s) 264, 292, 365
BmuI ACTGGG 1 cut(s) 301
BpiI GAAGAC 1 cut(s) 164
BplI GAGNNNNNCTC 2 cut(s) 220, 252
BpmI CTGGAG 2 cut(s) 247, 297
BpuEI CTTGAG 2 cut(s) 222, 346
BsaI GGTCTC 1 cut(s) 240
BsaJI CCNNGG 2 cut(s) 107, 250
Bsc4I CCNNNNNNNGG 1 cut(s) 231
Bse1I ACTGG 2 cut(s) 295, 307
BseBI CCWGG 2 cut(s) 210, 226
BseDI CCNNGG 2 cut(s) 107, 250
BseGI GGATG 3 cut(s) 87, 94, 356
BseLI CCNNNNNNNGG 1 cut(s) 231
BseMII CTCAG 1 cut(s) 363
BseNI ACTGG 2 cut(s) 295, 307
BseRI GAGGAG 1 cut(s) 91
BseSI GKGCMC 1 cut(s) 24
BseXI GCAGC 1 cut(s) 77
BshFI GGCC 1 cut(s) 112
BshNI GGYRCC 1 cut(s) 21
BsiSI CCGG 1 cut(s) 400
BslFI GGGAC 1 cut(s) 373
BslI CCNNNNNNNGG 1 cut(s) 231
BsmAI GTCTC 2 cut(s) 240, 315
BsmFI GGGAC 1 cut(s) 373
BsnI GGCC 1 cut(s) 112
Bso31I GGTCTC 1 cut(s) 240
Bsp1286I GDGCHC 1 cut(s) 24
Bsp143I GATC 3 cut(s) 84, 205, 409
BspANI GGCC 1 cut(s) 112
BspCNI CTCAG 1 cut(s) 364
BspLI GGNNCC 1 cut(s) 23
BspPI GGATC 1 cut(s) 200
BspT107I GGYRCC 1 cut(s) 21
BspTNI GGTCTC 1 cut(s) 240
BsrI ACTGG 2 cut(s) 295, 307
BssECI CCNNGG 2 cut(s) 107, 250
BssMI GATC 3 cut(s) 84, 205, 409
BssT1I CCWWGG 2 cut(s) 107, 250
Bst2UI CCWGG 2 cut(s) 210, 226
Bst4CI ACNGT 1 cut(s) 407
BstAPI GCANNNNNTGC 1 cut(s) 62
BstDEI CTNAG 1 cut(s) 372
BstENI CCTNNNNNAGG 1 cut(s) 229
BstF5I GGATG 3 cut(s) 87, 94, 356
BstKTI GATC 3 cut(s) 87, 208, 412
BstMAI GTCTC 2 cut(s) 240, 315
BstMBI GATC 3 cut(s) 84, 205, 409
BstMWI GCNNNNNNNGC 1 cut(s) 62
BstNI CCWGG 2 cut(s) 210, 226
BstSCI CCNGG 2 cut(s) 208, 224
BstSLI GKGCMC 1 cut(s) 24
BstV1I GCAGC 1 cut(s) 77
BstV2I GAAGAC 1 cut(s) 164
BsuI GTATCC 1 cut(s) 239
BsuRI GGCC 1 cut(s) 112
BtgZI GCGATG 2 cut(s) 241, 315
BtsCI GGATG 3 cut(s) 87, 94, 356
BtsIMutI CAGTG 2 cut(s) 302, 412
Csp6I GTAC 1 cut(s) 380
CviJI RGCY 4 cut(s) 112, 199, 242, 317
CviKI_1 RGCY 4 cut(s) 112, 199, 242, 317
CviQI GTAC 1 cut(s) 380
DdeI CTNAG 1 cut(s) 372
DpnI GATC 3 cut(s) 86, 207, 411
DpnII GATC 3 cut(s) 84, 205, 409
Eco130I CCWWGG 2 cut(s) 107, 250
Eco31I GGTCTC 1 cut(s) 240
Eco57I CTGAAG 2 cut(s) 212, 272
EcoNI CCTNNNNNAGG 1 cut(s) 229
EcoRII CCWGG 2 cut(s) 208, 224
EcoT14I CCWWGG 2 cut(s) 107, 250
ErhI CCWWGG 2 cut(s) 107, 250
FaiI YATR 1 cut(s) 29
FalI AAGNNNNNCTT 2 cut(s) 45, 77
FaqI GGGAC 1 cut(s) 373
FbaI TGATCA 1 cut(s) 409
Fnu4HI GCNGC 1 cut(s) 66
FokI GGATG 3 cut(s) 81, 94, 343
Fsp4HI GCNGC 1 cut(s) 66
GluI GCNGC 1 cut(s) 66
GsuI CTGGAG 2 cut(s) 247, 297
HaeIII GGCC 1 cut(s) 112
HapII CCGG 1 cut(s) 400
HpaII CCGG 1 cut(s) 400
HphI GGTGA 1 cut(s) 312
Hpy188I TCNGA 3 cut(s) 139, 192, 373
HpyAV CCTTC 4 cut(s) 28, 32, 265, 296
HpyCH4III ACNGT 1 cut(s) 407
HpyCH4V TGCA 1 cut(s) 65
HpyF10VI GCNNNNNNNGC 1 cut(s) 62
HpyF3I CTNAG 1 cut(s) 372
Ksp22I TGATCA 1 cut(s) 409
Kzo9I GATC 3 cut(s) 84, 205, 409
Lsp1109I GCAGC 1 cut(s) 77
LweI GCATC 3 cut(s) 264, 292, 365
MalI GATC 3 cut(s) 86, 207, 411
MboI GATC 3 cut(s) 84, 205, 409
MboII GAAGA 5 cut(s) 83, 134, 142, 169, 182
MhlI GDGCHC 1 cut(s) 24
MluCI AATT 2 cut(s) 276, 413
MnlI CCTC 7 cut(s) 3, 69, 72, 112, 370, 402, 407
MspI CCGG 1 cut(s) 400
MspR9I CCNGG 2 cut(s) 210, 226
MvaI CCWGG 2 cut(s) 210, 226
MwoI GCNNNNNNNGC 1 cut(s) 62
NdeII GATC 3 cut(s) 84, 205, 409
NlaIV GGNNCC 1 cut(s) 23
PfoI TCCNGGA 1 cut(s) 208
PkrI GCNGC 1 cut(s) 67
Psp6I CCWGG 2 cut(s) 208, 224
PspGI CCWGG 2 cut(s) 208, 224
PspN4I GGNNCC 1 cut(s) 23
RsaI GTAC 1 cut(s) 381
RsaNI GTAC 1 cut(s) 380
SatI GCNGC 1 cut(s) 66
Sau3AI GATC 3 cut(s) 84, 205, 409
ScrFI CCNGG 2 cut(s) 210, 226
SduI GDGCHC 1 cut(s) 24
SetI ASST 5 cut(s) 227, 236, 244, 288, 319
SfaNI GCATC 3 cut(s) 264, 292, 365
SmlI CTYRAG 2 cut(s) 237, 361
SmoI CTYRAG 2 cut(s) 237, 361
Sse9I AATT 2 cut(s) 276, 413
StyD4I CCNGG 2 cut(s) 208, 224
StyI CCWWGG 2 cut(s) 107, 250
TaaI ACNGT 1 cut(s) 407
TaqI TCGA 1 cut(s) 8
TasI AATT 2 cut(s) 276, 413
TscAI CASTG 2 cut(s) 302, 412
TseI GCWGC 1 cut(s) 65
TspDTI ATGAA 1 cut(s) 83
TspRI CASTG 2 cut(s) 302, 412
XagI CCTNNNNNAGG 1 cut(s) 229
XapI RAATTY 1 cut(s) 276
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.