Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 827 |
| Acc36I | ACCTGC | 2 cut(s) | 106, 827 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1016 |
| AccBSI | CCGCTC | 1 cut(s) | 697 |
| AciI | CCGC | 2 cut(s) | 697, 734 |
| AclWI | GGATC | 6 cut(s) | 116, 175, 188, 629, 718, 789 |
| AcoI | YGGCCR | 1 cut(s) | 698 |
| AcsI | RAATTY | 2 cut(s) | 173, 525 |
| AcuI | CTGAAG | 3 cut(s) | 446, 935, 1013 |
| AfaI | GTAC | 1 cut(s) | 276 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 115, 190, 331, 733, 1016 |
| AflIII | ACRYGT | 1 cut(s) | 859 |
| AgsI | TTSAA | 9 cut(s) | 136, 290, 364, 422, 470, 476, 484, 667, 884 |
| AhlI | ACTAGT | 1 cut(s) | 965 |
| AjnI | CCWGG | 1 cut(s) | 183 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1003, 1035 |
| AleI | CACNNNNGTG | 1 cut(s) | 57 |
| AluBI | AGCT | 2 cut(s) | 15, 997 |
| AluI | AGCT | 2 cut(s) | 15, 997 |
| Alw21I | GWGCWC | 2 cut(s) | 768, 965 |
| Alw26I | GTCTC | 1 cut(s) | 806 |
| Alw44I | GTGCAC | 1 cut(s) | 961 |
| AlwI | GGATC | 6 cut(s) | 116, 175, 188, 629, 718, 789 |
| Ama87I | CYCGRG | 1 cut(s) | 329 |
| AoxI | GGCC | 1 cut(s) | 698 |
| ApaLI | GTGCAC | 1 cut(s) | 961 |
| ApeKI | GCWGC | 1 cut(s) | 942 |
| ApoI | RAATTY | 2 cut(s) | 173, 525 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 805, 837 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 131, 225, 359, 456 |
| AspA2I | CCTAGG | 1 cut(s) | 563 |
| AsuHPI | GGTGA | 1 cut(s) | 991 |
| AsuII | TTCGAA | 1 cut(s) | 219 |
| AvaI | CYCGRG | 1 cut(s) | 329 |
| AvrII | CCTAGG | 1 cut(s) | 563 |
| BaeGI | GKGCMC | 1 cut(s) | 965 |
| BamHI | GGATCC | 1 cut(s) | 180 |
| BauI | CACGAG | 1 cut(s) | 767 |
| BbsI | GAAGAC | 3 cut(s) | 929, 980, 980 |
| Bbv12I | GWGCWC | 2 cut(s) | 768, 965 |
| BbvI | GCAGC | 1 cut(s) | 954 |
| BccI | CCATC | 3 cut(s) | 154, 665, 821 |
| BciT130I | CCWGG | 1 cut(s) | 185 |
| BcoDI | GTCTC | 1 cut(s) | 806 |
| BcuI | ACTAGT | 1 cut(s) | 965 |
| BfaI | CTAG | 4 cut(s) | 564, 582, 966, 1035 |
| BfmI | CTRYAG | 1 cut(s) | 834 |
| BfuAI | ACCTGC | 2 cut(s) | 106, 827 |
| BisI | GCNGC | 2 cut(s) | 698, 943 |
| BlnI | CCTAGG | 1 cut(s) | 563 |
| BlsI | GCNGC | 2 cut(s) | 699, 944 |
| Bme1390I | CCNGG | 1 cut(s) | 185 |
| BmeT110I | CYCGRG | 1 cut(s) | 329 |
| BmiI | GGNNCC | 3 cut(s) | 182, 323, 849 |
| BmrFI | CCNGG | 1 cut(s) | 185 |
| BmsI | GCATC | 2 cut(s) | 482, 742 |
| BpiI | GAAGAC | 3 cut(s) | 929, 980, 980 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 481, 513 |
| BpmI | CTGGAG | 2 cut(s) | 291, 618 |
| Bpu14I | TTCGAA | 1 cut(s) | 219 |
| BsaJI | CCNNGG | 2 cut(s) | 328, 563 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 249, 279, 755, 785, 991, 1021 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 115, 190, 331, 733, 1016 |
| Bse1I | ACTGG | 1 cut(s) | 677 |
| BseBI | CCWGG | 1 cut(s) | 185 |
| BseDI | CCNNGG | 2 cut(s) | 328, 563 |
| BseGI | GGATG | 4 cut(s) | 165, 445, 657, 832 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 115, 190, 331, 733, 1016 |
| BseMII | CTCAG | 1 cut(s) | 512 |
| BseNI | ACTGG | 1 cut(s) | 677 |
| BseRI | GAGGAG | 3 cut(s) | 267, 270, 317 |
| BseSI | GKGCMC | 1 cut(s) | 965 |
| BseXI | GCAGC | 1 cut(s) | 954 |
| BseYI | CCCAGC | 1 cut(s) | 194 |
| BsgI | GTGCAG | 1 cut(s) | 555 |
| BshFI | GGCC | 1 cut(s) | 700 |
| BsiHKAI | GWGCWC | 2 cut(s) | 768, 965 |
| BsiHKCI | CYCGRG | 1 cut(s) | 329 |
| BslFI | GGGAC | 1 cut(s) | 888 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 115, 190, 331, 733, 1016 |
| BsmAI | GTCTC | 1 cut(s) | 806 |
| BsmFI | GGGAC | 1 cut(s) | 888 |
| BsnI | GGCC | 1 cut(s) | 700 |
| BsoBI | CYCGRG | 1 cut(s) | 329 |
| Bsp119I | TTCGAA | 1 cut(s) | 219 |
| Bsp1286I | GDGCHC | 2 cut(s) | 768, 965 |
| Bsp143I | GATC | 7 cut(s) | 121, 180, 232, 411, 634, 723, 781 |
| BspACI | CCGC | 2 cut(s) | 697, 734 |
| BspANI | GGCC | 1 cut(s) | 700 |
| BspCNI | CTCAG | 1 cut(s) | 511 |
| BspHI | TCATGA | 1 cut(s) | 394 |
| BspLI | GGNNCC | 3 cut(s) | 182, 323, 849 |
| BspMAI | CTGCAG | 1 cut(s) | 838 |
| BspMI | ACCTGC | 2 cut(s) | 106, 827 |
| BspPI | GGATC | 6 cut(s) | 116, 175, 188, 629, 718, 789 |
| BspQI | GCTCTTC | 1 cut(s) | 285 |
| BspT104I | TTCGAA | 1 cut(s) | 219 |
| BsrBI | CCGCTC | 1 cut(s) | 697 |
| BsrI | ACTGG | 1 cut(s) | 677 |
| BssECI | CCNNGG | 2 cut(s) | 328, 563 |
| BssMI | GATC | 7 cut(s) | 121, 180, 232, 411, 634, 723, 781 |
| BssSI | CACGAG | 1 cut(s) | 767 |
| BssT1I | CCWWGG | 1 cut(s) | 563 |
| Bst2BI | CACGAG | 1 cut(s) | 767 |
| Bst2UI | CCWGG | 1 cut(s) | 185 |
| Bst4CI | ACNGT | 3 cut(s) | 456, 543, 893 |
| Bst6I | CTCTTC | 4 cut(s) | 285, 421, 655, 662 |
| BstBI | TTCGAA | 1 cut(s) | 219 |
| BstC8I | GCNNGC | 2 cut(s) | 13, 932 |
| BstDEI | CTNAG | 1 cut(s) | 498 |
| BstF5I | GGATG | 4 cut(s) | 165, 445, 657, 832 |
| BstKTI | GATC | 7 cut(s) | 124, 183, 235, 414, 637, 726, 784 |
| BstMAI | GTCTC | 1 cut(s) | 806 |
| BstMBI | GATC | 7 cut(s) | 121, 180, 232, 411, 634, 723, 781 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 415 |
| BstNI | CCWGG | 1 cut(s) | 185 |
| BstNSI | RCATGY | 1 cut(s) | 863 |
| BstSCI | CCNGG | 1 cut(s) | 183 |
| BstSFI | CTRYAG | 1 cut(s) | 834 |
| BstSLI | GKGCMC | 1 cut(s) | 965 |
| BstV1I | GCAGC | 1 cut(s) | 954 |
| BstV2I | GAAGAC | 3 cut(s) | 929, 980, 980 |
| BstX2I | RGATCY | 1 cut(s) | 180 |
| BstYI | RGATCY | 1 cut(s) | 180 |
| BsuRI | GGCC | 1 cut(s) | 700 |
| BtsCI | GGATG | 4 cut(s) | 165, 445, 657, 832 |
| BtsI | GCAGTG | 2 cut(s) | 308, 642 |
| BtsIMutI | CAGTG | 5 cut(s) | 308, 506, 642, 898, 965 |
| BveI | ACCTGC | 2 cut(s) | 106, 827 |
| Cac8I | GCNNGC | 2 cut(s) | 13, 932 |
| CciI | TCATGA | 1 cut(s) | 394 |
| Csp6I | GTAC | 1 cut(s) | 275 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 137, 172 |
| CviAII | CATG | 3 cut(s) | 395, 518, 860 |
| CviQI | GTAC | 1 cut(s) | 275 |
| DdeI | CTNAG | 1 cut(s) | 498 |
| DpnI | GATC | 7 cut(s) | 123, 182, 234, 413, 636, 725, 783 |
| DpnII | GATC | 7 cut(s) | 121, 180, 232, 411, 634, 723, 781 |
| EaeI | YGGCCR | 1 cut(s) | 698 |
| Eam1104I | CTCTTC | 4 cut(s) | 285, 421, 655, 662 |
| EarI | CTCTTC | 4 cut(s) | 285, 421, 655, 662 |
| Eco130I | CCWWGG | 1 cut(s) | 563 |
| Eco57I | CTGAAG | 3 cut(s) | 446, 935, 1013 |
| Eco88I | CYCGRG | 1 cut(s) | 329 |
| EcoRI | GAATTC | 1 cut(s) | 173 |
| EcoRII | CCWGG | 1 cut(s) | 183 |
| EcoT14I | CCWWGG | 1 cut(s) | 563 |
| EcoT22I | ATGCAT | 1 cut(s) | 871 |
| ErhI | CCWWGG | 1 cut(s) | 563 |
| FaeI | CATG | 3 cut(s) | 398, 521, 863 |
| FaiI | YATR | 9 cut(s) | 33, 94, 203, 348, 396, 519, 548, 809, 861 |
| FalI | AAGNNNNNCTT | 3 cut(s) | 398, 430, 1041 |
| FaqI | GGGAC | 1 cut(s) | 888 |
| FatI | CATG | 3 cut(s) | 394, 517, 859 |
| Fnu4HI | GCNGC | 2 cut(s) | 698, 943 |
| FokI | GGATG | 4 cut(s) | 172, 452, 644, 839 |
| Fsp4HI | GCNGC | 2 cut(s) | 698, 943 |
| FspBI | CTAG | 4 cut(s) | 564, 582, 966, 1035 |
| GluI | GCNGC | 2 cut(s) | 698, 943 |
| GsaI | CCCAGC | 1 cut(s) | 198 |
| GsuI | CTGGAG | 2 cut(s) | 291, 618 |
| HaeIII | GGCC | 1 cut(s) | 700 |
| Hin1II | CATG | 3 cut(s) | 398, 521, 863 |
| HincII | GTYRAC | 1 cut(s) | 45 |
| HindII | GTYRAC | 1 cut(s) | 45 |
| HindIII | AAGCTT | 1 cut(s) | 13 |
| HinfI | GANTC | 5 cut(s) | 221, 258, 301, 787, 955 |
| HpaI | GTTAAC | 1 cut(s) | 45 |
| HphI | GGTGA | 1 cut(s) | 991 |
| Hpy166II | GTNNAC | 4 cut(s) | 45, 166, 506, 963 |
| Hpy188I | TCNGA | 4 cut(s) | 126, 786, 915, 993 |
| Hpy188III | TCNNGA | 6 cut(s) | 178, 230, 270, 364, 395, 597 |
| Hpy8I | GTNNAC | 4 cut(s) | 45, 166, 506, 963 |
| Hpy99I | CGWCG | 1 cut(s) | 690 |
| HpyAV | CCTTC | 6 cut(s) | 121, 349, 478, 729, 772, 1036 |
| HpyCH4III | ACNGT | 3 cut(s) | 456, 543, 893 |
| HpyCH4V | TGCA | 6 cut(s) | 35, 536, 574, 836, 869, 963 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 415 |
| HpyF3I | CTNAG | 1 cut(s) | 498 |
| Hsp92II | CATG | 3 cut(s) | 398, 521, 863 |
| KspAI | GTTAAC | 1 cut(s) | 45 |
| Kzo9I | GATC | 7 cut(s) | 121, 180, 232, 411, 634, 723, 781 |
| LguI | GCTCTTC | 1 cut(s) | 285 |
| LmnI | GCTCC | 2 cut(s) | 694, 763 |
| Lsp1109I | GCAGC | 1 cut(s) | 954 |
| LweI | GCATC | 2 cut(s) | 482, 742 |
| MaeI | CTAG | 4 cut(s) | 564, 582, 966, 1035 |
| MaeIII | GTNAC | 3 cut(s) | 511, 745, 907 |
| MalI | GATC | 7 cut(s) | 123, 182, 234, 413, 636, 725, 783 |
| MbiI | CCGCTC | 1 cut(s) | 697 |
| MboI | GATC | 7 cut(s) | 121, 180, 232, 411, 634, 723, 781 |
| MflI | RGATCY | 1 cut(s) | 180 |
| MhlI | GDGCHC | 2 cut(s) | 768, 965 |
| MluCI | AATT | 5 cut(s) | 173, 315, 470, 525, 702 |
| MlyI | GAGTC | 2 cut(s) | 267, 796 |
| MmeI | TCCRAC | 5 cut(s) | 753, 815, 875, 1034, 1053 |
| Mph1103I | ATGCAT | 1 cut(s) | 871 |
| MroXI | GAANNNNTTC | 4 cut(s) | 131, 225, 359, 456 |
| MseI | TTAA | 2 cut(s) | 44, 864 |
| MslI | CAYNNNNRTG | 2 cut(s) | 57, 864 |
| MspR9I | CCNGG | 1 cut(s) | 185 |
| MvaI | CCWGG | 1 cut(s) | 185 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 415 |
| NdeII | GATC | 7 cut(s) | 121, 180, 232, 411, 634, 723, 781 |
| NlaIII | CATG | 3 cut(s) | 398, 521, 863 |
| NlaIV | GGNNCC | 3 cut(s) | 182, 323, 849 |
| NmeAIII | GCCGAG | 1 cut(s) | 596 |
| NmuCI | GTSAC | 2 cut(s) | 511, 745 |
| NsiI | ATGCAT | 1 cut(s) | 871 |
| NspI | RCATGY | 1 cut(s) | 863 |
| NspV | TTCGAA | 1 cut(s) | 219 |
| OliI | CACNNNNGTG | 1 cut(s) | 57 |
| PagI | TCATGA | 1 cut(s) | 394 |
| PaqCI | CACCTGC | 1 cut(s) | 827 |
| PciI | ACATGT | 1 cut(s) | 859 |
| PciSI | GCTCTTC | 1 cut(s) | 285 |
| PdmI | GAANNNNTTC | 4 cut(s) | 131, 225, 359, 456 |
| PfeI | GAWTC | 3 cut(s) | 221, 301, 955 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1016 |
| PfoI | TCCNGGA | 1 cut(s) | 183 |
| PkrI | GCNGC | 2 cut(s) | 699, 944 |
| PleI | GAGTC | 2 cut(s) | 266, 795 |
| PpsI | GAGTC | 2 cut(s) | 266, 795 |
| PscI | ACATGT | 1 cut(s) | 859 |
| Psp6I | CCWGG | 1 cut(s) | 183 |
| PspFI | CCCAGC | 1 cut(s) | 194 |
| PspGI | CCWGG | 1 cut(s) | 183 |
| PspN4I | GGNNCC | 3 cut(s) | 182, 323, 849 |
| PstI | CTGCAG | 1 cut(s) | 838 |
| PsuI | RGATCY | 1 cut(s) | 180 |
| RsaI | GTAC | 1 cut(s) | 276 |
| RsaNI | GTAC | 1 cut(s) | 275 |
| RseI | CAYNNNNRTG | 2 cut(s) | 57, 864 |
| SapI | GCTCTTC | 1 cut(s) | 285 |
| SaqAI | TTAA | 2 cut(s) | 44, 864 |
| SatI | GCNGC | 2 cut(s) | 698, 943 |
| Sau3AI | GATC | 7 cut(s) | 121, 180, 232, 411, 634, 723, 781 |
| SchI | GAGTC | 2 cut(s) | 267, 796 |
| ScrFI | CCNGG | 1 cut(s) | 185 |
| SduI | GDGCHC | 2 cut(s) | 768, 965 |
| SfaNI | GCATC | 2 cut(s) | 482, 742 |
| SfcI | CTRYAG | 1 cut(s) | 834 |
| SfuI | TTCGAA | 1 cut(s) | 219 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 57, 864 |
| SpeI | ACTAGT | 1 cut(s) | 965 |
| Sse9I | AATT | 5 cut(s) | 173, 315, 470, 525, 702 |
| SsiI | CCGC | 2 cut(s) | 697, 734 |
| SspMI | CTAG | 4 cut(s) | 564, 582, 966, 1035 |
| StyD4I | CCNGG | 1 cut(s) | 183 |
| StyI | CCWWGG | 1 cut(s) | 563 |
| TaaI | ACNGT | 3 cut(s) | 456, 543, 893 |
| TaqI | TCGA | 7 cut(s) | 219, 229, 235, 374, 450, 688, 722 |
| TasI | AATT | 5 cut(s) | 173, 315, 470, 525, 702 |
| TauI | GCSGC | 1 cut(s) | 700 |
| TfiI | GAWTC | 3 cut(s) | 221, 301, 955 |
| Tru1I | TTAA | 2 cut(s) | 44, 864 |
| Tru9I | TTAA | 2 cut(s) | 44, 864 |
| TscAI | CASTG | 5 cut(s) | 315, 506, 649, 898, 965 |
| TseFI | GTSAC | 2 cut(s) | 511, 745 |
| TseI | GCWGC | 1 cut(s) | 942 |
| Tsp45I | GTSAC | 2 cut(s) | 511, 745 |
| TspRI | CASTG | 5 cut(s) | 315, 506, 649, 898, 965 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1016 |
| VneI | GTGCAC | 1 cut(s) | 961 |
| XapI | RAATTY | 2 cut(s) | 173, 525 |
| XceI | RCATGY | 1 cut(s) | 863 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 191 |
| XmaJI | CCTAGG | 1 cut(s) | 563 |
| XmnI | GAANNNNTTC | 4 cut(s) | 131, 225, 359, 456 |
| XspI | CTAG | 4 cut(s) | 564, 582, 966, 1035 |
| Zsp2I | ATGCAT | 1 cut(s) | 871 |