Rmu_sc0001030.1_g000011

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001030.1
OG0000169
Physical Location & Seq
Reverse (-)
44432 .. 45363
932 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001030.1_g000011.1.cds

Sequence Viewer

Length: 852 bp
atggctaccattgacgctgtaactgccagctttgctgcctccctagcgctggctgaagggggtaaagccccgaacttgggaaagattggtggagggccagttaggcggtctacacaatcttttcttctcagaaaaccacttactcgtaaatcggtggattccaatgctttcaaatctcagtttttcaagacctggatggtggagaaggacttccgcatccaagaaaaggcagacaacaggttcctcatctcctttgatctggccagagatcggaacaaggtgcttaaaggtggtgtttggatatgggttagggtttcgggtatccctcctctctatgaggaacccgaaaatctcattctcattggaaatcttctgggcggctatctggactctgacaagagagagtttcgcaaaggtgttgtgcgcatcttcttctcccagaatatttcgaagtcggttcttctcgagcgtcaggtttttctggcccccggtgtagaacctattctacagttccagtttgaacatcttaaaggtagatgtccccaatgtggtatgatcacacatattggggcgaagtgtgaggagcctgtgacccttgctgatcctagagtcttgaactgtggtggcggctcttcctcctcgggcggtgcctttgcgttctctaccaggaaccctcgagagttacctatgctttcttcctctctgttgaaaaagaaaaagccaactattcgtcggctagagcgatccactactacaactacagggcttgatggcaccgtatcaaactcgccagttttggaaggtatggaccatggtgtttcattgcaggacatggctaccgaggtgaactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 Exo_endo_phos_2 RNase_H RVT_1 zf-CCHC_4

Protein Analysis

283

Amino Acids

31.09

Weight (kDa)

9.66

Isoelectric Point (pI)

42.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000169)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13681 FvH4_3g25832 FvH4_3g26062 FvH4_4g08041 FvH4_4g13361 FvH4_4g16721 FvH4_4g21881 FvH4_6g07632 FvH4_6g17062 FvH4_6g26370 FvH4_7g07641
rosa_chinensis RchiOBHm_Chr1g0320861 RchiOBHm_Chr2g0109251 RchiOBHm_Chr3g0472781 RchiOBHm_Chr6g0288921 RchiOBHm_Chr7g0191711 RchiOBHm_Chr7g0238801
rosa_laevigata RLG00000007550 RLG00000036731
rosa_multiflora Rmu_co8018808.1_g000001 Rmu_co8401665.1_g000001 Rmu_co8461051.1_g000001 Rmu_sc0000144.1_g000042 Rmu_sc0000144.1_g000051 Rmu_sc0000160.1_g000018 Rmu_sc0000245.1_g000011 Rmu_sc0000299.1_g000021 Rmu_sc0000348.1_g000003 Rmu_sc0000367.1_g000120 Rmu_sc0000424.1_g000037 Rmu_sc0000427.1_g000006 Rmu_sc0000427.1_g000023 Rmu_sc0000427.1_g000037 Rmu_sc0000604.1_g000005 Rmu_sc0000605.1_g000060 Rmu_sc0000621.1_g000030 Rmu_sc0000693.1_g000017 Rmu_sc0000708.1_g000012 Rmu_sc0000918.1_g000031 Rmu_sc0000953.1_g000027 Rmu_sc0001030.1_g000008 Rmu_sc0001030.1_g000011 Rmu_sc0001051.1_g000026 Rmu_sc0001055.1_g000001 Rmu_sc0001081.1_g000001 Rmu_sc0001175.1_g000002 Rmu_sc0001176.1_g000026 Rmu_sc0001181.1_g000010 Rmu_sc0001225.1_g000003 Rmu_sc0001371.1_g000008 Rmu_sc0001433.1_g000012 Rmu_sc0001507.1_g000009 Rmu_sc0001643.1_g000014 Rmu_sc0001879.1_g000002 Rmu_sc0001890.1_g000006 Rmu_sc0002129.1_g000039 Rmu_sc0002356.1_g000008 Rmu_sc0002358.1_g000003 Rmu_sc0002553.1_g000024 Rmu_sc0002826.1_g000007 Rmu_sc0002872.1_g000007 Rmu_sc0003323.1_g000026 Rmu_sc0003410.1_g000001 Rmu_sc0003511.1_g000042 Rmu_sc0003541.1_g000036 Rmu_sc0003605.1_g000048 Rmu_sc0003689.1_g000014 Rmu_sc0003692.1_g000010 Rmu_sc0003720.1_g000001 Rmu_sc0003813.1_g000003 Rmu_sc0003872.1_g000005 Rmu_sc0004010.1_g000012 Rmu_sc0004165.1_g000092 Rmu_sc0004230.1_g000013 Rmu_sc0004318.1_g000020 Rmu_sc0004353.1_g000004 Rmu_sc0004617.1_g000005 Rmu_sc0004617.1_g000006 Rmu_sc0004658.1_g000005 Rmu_sc0005356.1_g000008 Rmu_sc0005994.1_g000014 Rmu_sc0006388.1_g000004 Rmu_sc0006674.1_g000020 Rmu_sc0006898.1_g000008 Rmu_sc0007286.1_g000005 Rmu_sc0007476.1_g000002 Rmu_sc0007671.1_g000005 Rmu_sc0007991.1_g000008 Rmu_sc0008131.1_g000008 Rmu_sc0008163.1_g000011 Rmu_sc0008322.1_g000004 Rmu_sc0008334.1_g000017 Rmu_sc0008835.1_g000009 Rmu_sc0008835.1_g000011 Rmu_sc0009954.1_g000006 Rmu_sc0010050.1_g000001 Rmu_sc0010317.1_g000011 Rmu_sc0010426.1_g000002 Rmu_sc0011111.1_g000005 Rmu_sc0014614.1_g000003 Rmu_sc0014688.1_g000002 Rmu_sc0015167.1_g000003 Rmu_sc0015936.1_g000003 Rmu_sc0017323.1_g000003 Rmu_sc0018541.1_g000001 Rmu_sc0019370.1_g000003 Rmu_sc0020444.1_g000001 Rmu_sc0020600.1_g000003 Rmu_sc0021238.1_g000001 Rmu_sc0022909.1_g000001 Rmu_sc0030397.1_g000001 Rmu_sc0030484.1_g000002 Rmu_sc0035139.1_g000001 Rmu_sc0035719.1_g000001 Rmu_ssc0000287.1_g000010 Rmu_ssc0000451.1_g000005
rosa_roxburghii Rroxscaffold_1G00046590 Rroxscaffold_1G00050100 Rroxscaffold_2G00079390 Rroxscaffold_2G00088790 Rroxscaffold_2G00097170 Rroxscaffold_2G00126350 Rroxscaffold_3G00221550 Rroxscaffold_3G00222700 Rroxscaffold_3G00236390 Rroxscaffold_3G00254000 Rroxscaffold_3G00260090 Rroxscaffold_3G00263600 Rroxscaffold_5G00336900
rosa_rugosa Rorug01G0048200 Rorug01G0172000 Rorug01G0294000 Rorug01G0308200 Rorug01G0355300 Rorug02G0000900 Rorug02G0129600 Rorug02G0136800 Rorug02G0179700 Rorug02G0251500 Rorug02G0305800 Rorug02G0305900 Rorug02G0373800 Rorug02G0396100 Rorug02G0411300 Rorug02G0411400 Rorug02G0411500 Rorug02G0460200 Rorug03G0187400 Rorug03G0299000 Rorug04G0041700 Rorug04G0130800 Rorug04G0168300 Rorug04G0198700 Rorug05G0095100 Rorug05G0194100 Rorug05G0205300 Rorug05G0235300 Rorug06G0088100.1 Rorug06G0120100 Rorug06G0164300 Rorug07G0163600 Rorug07G0163700 Rorug07G0236200 Rorug07G0307200 RorugPtG0006100
rosa_samantha Rh1DG036900 Rh3BG176200 Rh4CG455100 Rh6AG142400 Rh6AG263000 Rh6CG138900 Rh6DG126200 Rh7CG393300 Rh7CG447500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 425
AccB1I GGYRCC 2 cut(s) 647, 773
AccI GTMKAC 1 cut(s) 110
AciI CCGC 5 cut(s) 106, 214, 378, 627, 645
AclWI GGATC 2 cut(s) 596, 738
AcoI YGGCCR 1 cut(s) 261
AcuI CTGAAG 1 cut(s) 75
AfeI AGCGCT 1 cut(s) 48
AfiI CCNNNNNNNGG 6 cut(s) 49, 76, 77, 226, 270, 548
AgsI TTSAA 5 cut(s) 172, 187, 521, 616, 709
AjnI CCWGG 2 cut(s) 191, 665
AluBI AGCT 1 cut(s) 30
AluI AGCT 1 cut(s) 30
AlwI GGATC 2 cut(s) 596, 738
Ama87I CYCGRG 3 cut(s) 464, 640, 675
Aor51HI AGCGCT 1 cut(s) 48
AoxI GGCC 3 cut(s) 95, 261, 483
ApeKI GCWGC 1 cut(s) 35
Asp700I GAANNNNTTC 2 cut(s) 209, 501
AspLEI GCGC 2 cut(s) 49, 426
AspS9I GGNCC 3 cut(s) 95, 484, 808
AsuC2I CCSGG 1 cut(s) 489
AsuII TTCGAA 1 cut(s) 449
AvaI CYCGRG 3 cut(s) 464, 640, 675
AvaII GGWCC 1 cut(s) 808
BalI TGGCCA 1 cut(s) 263
BanI GGYRCC 2 cut(s) 647, 773
BbvI GCAGC 1 cut(s) 22
BccI CCATC 2 cut(s) 190, 764
BciT130I CCWGG 2 cut(s) 193, 667
BciVI GTATCC 1 cut(s) 332
BclI TGATCA 1 cut(s) 555
BcnI CCSGG 1 cut(s) 489
BfaI CTAG 4 cut(s) 44, 606, 737, 850
BfmI CTRYAG 2 cut(s) 506, 759
BfoI RGCGCY 1 cut(s) 50
BfuI GTATCC 1 cut(s) 332
BglI GCCNNNNNGGC 1 cut(s) 103
BisI GCNGC 3 cut(s) 36, 379, 628
BlsI GCNGC 3 cut(s) 37, 380, 629
Bme1390I CCNGG 3 cut(s) 193, 489, 667
Bme18I GGWCC 1 cut(s) 808
BmeT110I CYCGRG 3 cut(s) 464, 640, 675
BmgT120I GGNCC 3 cut(s) 95, 484, 808
BmiI GGNNCC 7 cut(s) 242, 342, 486, 585, 649, 671, 775
BmrFI CCNGG 3 cut(s) 193, 489, 667
BmsI GCATC 2 cut(s) 225, 435
Bpu14I TTCGAA 1 cut(s) 449
BpuMI CCSGG 1 cut(s) 489
BsaJI CCNNGG 4 cut(s) 487, 639, 811, 840
BsaXI ACNNNNNCTCC 2 cut(s) 84, 114
Bsc4I CCNNNNNNNGG 6 cut(s) 49, 76, 77, 226, 270, 548
Bse1I ACTGG 3 cut(s) 98, 514, 791
Bse3DI GCAATG 1 cut(s) 821
BseBI CCWGG 2 cut(s) 193, 667
BseDI CCNNGG 4 cut(s) 487, 639, 811, 840
BseGI GGATG 2 cut(s) 201, 216
BseLI CCNNNNNNNGG 6 cut(s) 49, 76, 77, 226, 270, 548
BseMI GCAATG 1 cut(s) 821
BseMII CTCAG 2 cut(s) 142, 191
BseNI ACTGG 3 cut(s) 98, 514, 791
BseRI GAGGAG 3 cut(s) 318, 596, 628
BseXI GCAGC 1 cut(s) 22
BshFI GGCC 3 cut(s) 97, 263, 485
BshNI GGYRCC 2 cut(s) 647, 773
BsiHKCI CYCGRG 3 cut(s) 464, 640, 675
BsiSI CCGG 1 cut(s) 489
BslFI GGGAC 1 cut(s) 525
BslI CCNNNNNNNGG 6 cut(s) 49, 76, 77, 226, 270, 548
BsmFI GGGAC 1 cut(s) 525
BsnI GGCC 3 cut(s) 97, 263, 485
BsoBI CYCGRG 3 cut(s) 464, 640, 675
Bsp119I TTCGAA 1 cut(s) 449
Bsp143I GATC 5 cut(s) 256, 268, 555, 601, 743
Bsp19I CCATGG 1 cut(s) 811
BspACI CCGC 5 cut(s) 106, 214, 378, 627, 645
BspANI GGCC 3 cut(s) 97, 263, 485
BspCNI CTCAG 2 cut(s) 141, 190
BspLI GGNNCC 7 cut(s) 242, 342, 486, 585, 649, 671, 775
BspPI GGATC 2 cut(s) 596, 738
BspQI GCTCTTC 1 cut(s) 637
BspT104I TTCGAA 1 cut(s) 449
BspT107I GGYRCC 2 cut(s) 647, 773
BsrDI GCAATG 1 cut(s) 821
BsrI ACTGG 3 cut(s) 98, 514, 791
BssECI CCNNGG 4 cut(s) 487, 639, 811, 840
BssMI GATC 5 cut(s) 256, 268, 555, 601, 743
BssT1I CCWWGG 1 cut(s) 811
Bst2UI CCWGG 2 cut(s) 193, 667
Bst4CI ACNGT 3 cut(s) 510, 620, 778
Bst6I CTCTTC 1 cut(s) 637
BstBI TTCGAA 1 cut(s) 449
BstC8I GCNNGC 2 cut(s) 28, 51
BstDEI CTNAG 2 cut(s) 128, 177
BstDSI CCRYGG 1 cut(s) 811
BstF5I GGATG 2 cut(s) 201, 216
BstH2I RGCGCY 1 cut(s) 50
BstHHI GCGC 2 cut(s) 49, 426
BstKTI GATC 5 cut(s) 259, 271, 558, 604, 746
BstMBI GATC 5 cut(s) 256, 268, 555, 601, 743
BstMWI GCNNNNNNNGC 4 cut(s) 23, 32, 44, 103
BstNI CCWGG 2 cut(s) 193, 667
BstSCI CCNGG 3 cut(s) 191, 487, 665
BstSFI CTRYAG 2 cut(s) 506, 759
BstV1I GCAGC 1 cut(s) 22
BsuI GTATCC 1 cut(s) 332
BsuRI GGCC 3 cut(s) 97, 263, 485
BtgI CCRYGG 1 cut(s) 811
BtsCI GGATG 2 cut(s) 201, 216
Cac8I GCNNGC 2 cut(s) 28, 51
CfoI GCGC 2 cut(s) 49, 426
Cfr13I GGNCC 3 cut(s) 95, 484, 808
CseI GACGC 2 cut(s) 23, 458
CviAII CATG 2 cut(s) 812, 832
DdeI CTNAG 2 cut(s) 128, 177
DpnI GATC 5 cut(s) 258, 270, 557, 603, 745
DpnII GATC 5 cut(s) 256, 268, 555, 601, 743
EaeI YGGCCR 1 cut(s) 261
Eam1104I CTCTTC 1 cut(s) 637
EarI CTCTTC 1 cut(s) 637
Eco130I CCWWGG 1 cut(s) 811
Eco47I GGWCC 1 cut(s) 808
Eco47III AGCGCT 1 cut(s) 48
Eco57I CTGAAG 1 cut(s) 75
Eco88I CYCGRG 3 cut(s) 464, 640, 675
EcoRII CCWGG 2 cut(s) 191, 665
EcoT14I CCWWGG 1 cut(s) 811
ErhI CCWWGG 1 cut(s) 811
FaeI CATG 2 cut(s) 815, 835
FaiI YATR 8 cut(s) 304, 336, 554, 564, 689, 806, 813, 833
FaqI GGGAC 1 cut(s) 525
FatI CATG 2 cut(s) 811, 831
FbaI TGATCA 1 cut(s) 555
FblI GTMKAC 1 cut(s) 110
Fnu4HI GCNGC 3 cut(s) 36, 379, 628
FokI GGATG 2 cut(s) 203, 208
Fsp4HI GCNGC 3 cut(s) 36, 379, 628
FspAI RTGCGCAY 1 cut(s) 425
FspBI CTAG 4 cut(s) 44, 606, 737, 850
FspI TGCGCA 1 cut(s) 425
GlaI GCGC 2 cut(s) 48, 425
GluI GCNGC 3 cut(s) 36, 379, 628
HaeII RGCGCY 1 cut(s) 50
HaeIII GGCC 3 cut(s) 97, 263, 485
HapII CCGG 1 cut(s) 489
HgaI GACGC 2 cut(s) 23, 458
HhaI GCGC 2 cut(s) 49, 426
Hin1II CATG 2 cut(s) 815, 835
Hin6I GCGC 2 cut(s) 47, 424
HinP1I GCGC 2 cut(s) 47, 424
HinfI GANTC 3 cut(s) 158, 389, 609
HpaII CCGG 1 cut(s) 489
Hpy166II GTNNAC 2 cut(s) 111, 847
Hpy188I TCNGA 3 cut(s) 131, 273, 394
Hpy188III TCNNGA 5 cut(s) 187, 386, 464, 613, 677
Hpy8I GTNNAC 2 cut(s) 111, 847
Hpy99I CGWCG 1 cut(s) 735
HpyAV CCTTC 3 cut(s) 50, 199, 794
HpyCH4III ACNGT 3 cut(s) 510, 620, 778
HpyCH4V TGCA 1 cut(s) 826
HpyF10VI GCNNNNNNNGC 4 cut(s) 23, 32, 44, 103
HpyF3I CTNAG 2 cut(s) 128, 177
Hsp92II CATG 2 cut(s) 815, 835
HspAI GCGC 2 cut(s) 47, 424
Ksp22I TGATCA 1 cut(s) 555
Kzo9I GATC 5 cut(s) 256, 268, 555, 601, 743
LguI GCTCTTC 1 cut(s) 637
LmnI GCTCC 1 cut(s) 583
Lsp1109I GCAGC 1 cut(s) 22
LweI GCATC 2 cut(s) 225, 435
MaeI CTAG 4 cut(s) 44, 606, 737, 850
MaeIII GTNAC 3 cut(s) 19, 589, 681
MalI GATC 5 cut(s) 258, 270, 557, 603, 745
MboI GATC 5 cut(s) 256, 268, 555, 601, 743
MboII GAAGA 7 cut(s) 116, 362, 421, 424, 452, 624, 687
MlsI TGGCCA 1 cut(s) 263
MluNI TGGCCA 1 cut(s) 263
MlyI GAGTC 2 cut(s) 383, 618
Mox20I TGGCCA 1 cut(s) 263
MroXI GAANNNNTTC 2 cut(s) 209, 501
MscI TGGCCA 1 cut(s) 263
MseI TTAA 2 cut(s) 285, 528
Msp20I TGGCCA 1 cut(s) 263
MspI CCGG 1 cut(s) 489
MspR9I CCNGG 3 cut(s) 193, 489, 667
MvaI CCWGG 2 cut(s) 193, 667
MwoI GCNNNNNNNGC 4 cut(s) 23, 32, 44, 103
NciI CCSGG 1 cut(s) 489
NcoI CCATGG 1 cut(s) 811
NdeII GATC 5 cut(s) 256, 268, 555, 601, 743
NlaIII CATG 2 cut(s) 815, 835
NlaIV GGNNCC 7 cut(s) 242, 342, 486, 585, 649, 671, 775
NmuCI GTSAC 1 cut(s) 589
NsbI TGCGCA 1 cut(s) 425
NspV TTCGAA 1 cut(s) 449
PaeR7I CTCGAG 2 cut(s) 464, 675
PciSI GCTCTTC 1 cut(s) 637
PcsI WCGNNNNNNNCGW 1 cut(s) 739
PdmI GAANNNNTTC 2 cut(s) 209, 501
PfeI GAWTC 1 cut(s) 158
PkrI GCNGC 3 cut(s) 37, 380, 629
PleI GAGTC 2 cut(s) 383, 617
PpsI GAGTC 2 cut(s) 383, 617
Psp6I CCWGG 2 cut(s) 191, 665
PspGI CCWGG 2 cut(s) 191, 665
PspN4I GGNNCC 7 cut(s) 242, 342, 486, 585, 649, 671, 775
PspPI GGNCC 3 cut(s) 95, 484, 808
PsrI GAACNNNNNNTAC 2 cut(s) 489, 521
SapI GCTCTTC 1 cut(s) 637
SaqAI TTAA 2 cut(s) 285, 528
SatI GCNGC 3 cut(s) 36, 379, 628
Sau3AI GATC 5 cut(s) 256, 268, 555, 601, 743
Sau96I GGNCC 3 cut(s) 95, 484, 808
SchI GAGTC 2 cut(s) 383, 618
ScrFI CCNGG 3 cut(s) 193, 489, 667
SfaNI GCATC 2 cut(s) 225, 435
SfcI CTRYAG 2 cut(s) 506, 759
Sfr274I CTCGAG 2 cut(s) 464, 675
SfuI TTCGAA 1 cut(s) 449
SinI GGWCC 1 cut(s) 808
SlaI CTCGAG 2 cut(s) 464, 675
SmlI CTYRAG 2 cut(s) 464, 675
SmoI CTYRAG 2 cut(s) 464, 675
SsiI CCGC 5 cut(s) 106, 214, 378, 627, 645
SspI AATATT 1 cut(s) 445
SspMI CTAG 4 cut(s) 44, 606, 737, 850
StyD4I CCNGG 3 cut(s) 191, 487, 665
StyI CCWWGG 1 cut(s) 811
TaaI ACNGT 3 cut(s) 510, 620, 778
TaqI TCGA 3 cut(s) 449, 465, 676
TauI GCSGC 2 cut(s) 381, 630
TfiI GAWTC 1 cut(s) 158
Tru1I TTAA 2 cut(s) 285, 528
Tru9I TTAA 2 cut(s) 285, 528
TseFI GTSAC 1 cut(s) 589
TseI GCWGC 1 cut(s) 35
Tsp45I GTSAC 1 cut(s) 589
TspDTI ATGAA 1 cut(s) 810
VpaK11BI GGWCC 1 cut(s) 808
XhoI CTCGAG 2 cut(s) 464, 675
XmiI GTMKAC 1 cut(s) 110
XmnI GAANNNNTTC 2 cut(s) 209, 501
XspI CTAG 4 cut(s) 44, 606, 737, 850
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.