C3HC zinc finger-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| NABP | PF07990 | 404 - 656 | 1.2e-13 | Nucleic acid binding protein NABP |
| PUF | PF00806 | 662 - 695 | 8.2e-11 | Pumilio-family RNA binding repeat |
| PUF | PF00806 | 699 - 730 | 3.9e-09 | Pumilio-family RNA binding repeat |
| PUF | PF00806 | 734 - 766 | 1.2e-08 | Pumilio-family RNA binding repeat |
| PUF | PF00806 | 807 - 840 | 8e-12 | Pumilio-family RNA binding repeat |
| PUF | PF00806 | 844 - 876 | 1.2e-06 | Pumilio-family RNA binding repeat |
| PUF | PF00806 | 879 - 912 | 3.7e-12 | Pumilio-family RNA binding repeat |
| PUF | PF00806 | 922 - 953 | 1.3e-07 | Pumilio-family RNA binding repeat |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 2 cut(s) | 1376, 1613 |
| Acc36I | ACCTGC | 2 cut(s) | 1376, 1613 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1652 |
| AccBSI | CCGCTC | 1 cut(s) | 2710 |
| AccI | GTMKAC | 1 cut(s) | 1013 |
| AciI | CCGC | 6 cut(s) | 71, 305, 374, 554, 2710, 2836 |
| AcoI | YGGCCR | 3 cut(s) | 1450, 1811, 2941 |
| AcsI | RAATTY | 5 cut(s) | 754, 1634, 1955, 1991, 2947 |
| AcuI | CTGAAG | 3 cut(s) | 501, 1025, 1188 |
| AcyI | GRCGYC | 1 cut(s) | 2063 |
| AfaI | GTAC | 5 cut(s) | 100, 699, 1137, 1316, 2640 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 130, 199, 930, 1306, 1418, 1652, 2950 |
| AflIII | ACRYGT | 1 cut(s) | 2305 |
| AgeI | ACCGGT | 1 cut(s) | 682 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 2062 |
| AjiI | CACGTC | 1 cut(s) | 1514 |
| AjnI | CCWGG | 2 cut(s) | 1156, 1456 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 706, 738, 1108, 1140 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 619, 651 |
| Alw26I | GTCTC | 7 cut(s) | 20, 661, 776, 824, 1647, 1662, 2957 |
| AoxI | GGCC | 7 cut(s) | 162, 368, 1450, 1460, 1582, 1811, 2941 |
| ApeKI | GCWGC | 3 cut(s) | 104, 1310, 2833 |
| ApoI | RAATTY | 5 cut(s) | 754, 1634, 1955, 1991, 2947 |
| AseI | ATTAAT | 1 cut(s) | 2102 |
| AsiGI | ACCGGT | 1 cut(s) | 682 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 2367 |
| AspA2I | CCTAGG | 1 cut(s) | 809 |
| AspLEI | GCGC | 1 cut(s) | 1983 |
| AspS9I | GGNCC | 3 cut(s) | 1054, 1460, 1562 |
| AsuNHI | GCTAGC | 1 cut(s) | 728 |
| AvaII | GGWCC | 2 cut(s) | 1054, 1562 |
| AvrII | CCTAGG | 1 cut(s) | 809 |
| BaeGI | GKGCMC | 2 cut(s) | 138, 190 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 861, 894 |
| BalI | TGGCCA | 1 cut(s) | 2943 |
| BamHI | GGATCC | 2 cut(s) | 440, 1099 |
| BanII | GRGCYC | 1 cut(s) | 907 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 2024, 2056 |
| BbsI | GAAGAC | 2 cut(s) | 621, 2061 |
| BbvCI | CCTCAGC | 1 cut(s) | 159 |
| BbvI | GCAGC | 3 cut(s) | 116, 1297, 2845 |
| BccI | CCATC | 9 cut(s) | 58, 331, 456, 640, 1150, 1483, 1783, 2294, 2933 |
| BceAI | ACGGC | 3 cut(s) | 117, 1465, 2433 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 2608, 2642 |
| BciT130I | CCWGG | 2 cut(s) | 1158, 1458 |
| BciVI | GTATCC | 1 cut(s) | 862 |
| BclI | TGATCA | 1 cut(s) | 2326 |
| BcoDI | GTCTC | 7 cut(s) | 20, 661, 776, 824, 1647, 1662, 2957 |
| BfaI | CTAG | 5 cut(s) | 498, 729, 810, 936, 1722 |
| BfmI | CTRYAG | 3 cut(s) | 1383, 2044, 2373 |
| BfuAI | ACCTGC | 2 cut(s) | 1376, 1613 |
| BfuI | GTATCC | 1 cut(s) | 862 |
| BglII | AGATCT | 1 cut(s) | 916 |
| BisI | GCNGC | 4 cut(s) | 72, 105, 1311, 2834 |
| BlnI | CCTAGG | 1 cut(s) | 809 |
| BlpI | GCTNAGC | 1 cut(s) | 2706 |
| BlsI | GCNGC | 4 cut(s) | 73, 106, 1312, 2835 |
| Bme1390I | CCNGG | 2 cut(s) | 1158, 1458 |
| Bme18I | GGWCC | 2 cut(s) | 1054, 1562 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 2062 |
| BmgBI | CACGTC | 1 cut(s) | 1514 |
| BmgT120I | GGNCC | 3 cut(s) | 1054, 1460, 1562 |
| BmiI | GGNNCC | 7 cut(s) | 208, 227, 394, 442, 904, 1101, 1330 |
| BmrFI | CCNGG | 2 cut(s) | 1158, 1458 |
| BmrI | ACTGGG | 2 cut(s) | 882, 939 |
| BmsI | GCATC | 8 cut(s) | 58, 351, 484, 956, 1339, 1438, 2672, 2863 |
| BmtI | GCTAGC | 1 cut(s) | 732 |
| BmuI | ACTGGG | 2 cut(s) | 882, 939 |
| BpiI | GAAGAC | 2 cut(s) | 621, 2061 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 962, 994 |
| BpmI | CTGGAG | 3 cut(s) | 232, 1454, 1767 |
| Bpu10I | CCTNAGC | 3 cut(s) | 159, 1436, 2160 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 2706 |
| BpuEI | CTTGAG | 1 cut(s) | 441 |
| Bsa29I | ATCGAT | 1 cut(s) | 62 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1428 |
| BsaHI | GRCGYC | 1 cut(s) | 2063 |
| BsaI | GGTCTC | 1 cut(s) | 1662 |
| BsaWI | WCCGGW | 1 cut(s) | 682 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 619, 649, 790, 820 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 130, 199, 930, 1306, 1418, 1652, 2950 |
| Bse118I | RCCGGY | 1 cut(s) | 682 |
| Bse1I | ACTGG | 7 cut(s) | 249, 877, 934, 1239, 1784, 1941, 2548 |
| Bse3DI | GCAATG | 5 cut(s) | 442, 555, 1145, 1983, 2830 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1428 |
| BseBI | CCWGG | 2 cut(s) | 1158, 1458 |
| BseCI | ATCGAT | 1 cut(s) | 62 |
| BseGI | GGATG | 6 cut(s) | 73, 503, 820, 1528, 2434, 2515 |
| BseJI | GATNNNNATC | 1 cut(s) | 1428 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 130, 199, 930, 1306, 1418, 1652, 2950 |
| BseMI | GCAATG | 5 cut(s) | 442, 555, 1145, 1983, 2830 |
| BseMII | CTCAG | 6 cut(s) | 150, 2151, 2203, 2555, 2697, 2840 |
| BseNI | ACTGG | 7 cut(s) | 249, 877, 934, 1239, 1784, 1941, 2548 |
| BseRI | GAGGAG | 1 cut(s) | 497 |
| BseSI | GKGCMC | 2 cut(s) | 138, 190 |
| BseXI | GCAGC | 3 cut(s) | 116, 1297, 2845 |
| BseYI | CCCAGC | 1 cut(s) | 2568 |
| BsgI | GTGCAG | 1 cut(s) | 1236 |
| BshFI | GGCC | 7 cut(s) | 164, 370, 1452, 1462, 1584, 1813, 2943 |
| BshTI | ACCGGT | 1 cut(s) | 682 |
| BshVI | ATCGAT | 1 cut(s) | 62 |
| BsiSI | CCGG | 1 cut(s) | 683 |
| BslFI | GGGAC | 4 cut(s) | 1000, 1395, 1500, 2167 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 130, 199, 930, 1306, 1418, 1652, 2950 |
| BsmAI | GTCTC | 7 cut(s) | 20, 661, 776, 824, 1647, 1662, 2957 |
| BsmFI | GGGAC | 4 cut(s) | 1000, 1395, 1500, 2167 |
| BsmI | GAATGC | 4 cut(s) | 55, 1665, 2367, 2369 |
| BsnI | GGCC | 7 cut(s) | 164, 370, 1452, 1462, 1584, 1813, 2943 |
| Bso31I | GGTCTC | 1 cut(s) | 1662 |
| Bsp1286I | GDGCHC | 3 cut(s) | 138, 190, 907 |
| Bsp1407I | TGTACA | 2 cut(s) | 697, 2638 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 2706 |
| Bsp19I | CCATGG | 3 cut(s) | 1105, 1278, 1804 |
| BspACI | CCGC | 6 cut(s) | 71, 305, 374, 554, 2710, 2836 |
| BspANI | GGCC | 7 cut(s) | 164, 370, 1452, 1462, 1584, 1813, 2943 |
| BspCNI | CTCAG | 6 cut(s) | 151, 2152, 2202, 2554, 2698, 2841 |
| BspDI | ATCGAT | 1 cut(s) | 62 |
| BspHI | TCATGA | 1 cut(s) | 18 |
| BspLI | GGNNCC | 7 cut(s) | 208, 227, 394, 442, 904, 1101, 1330 |
| BspMAI | CTGCAG | 2 cut(s) | 1387, 2048 |
| BspMI | ACCTGC | 2 cut(s) | 1376, 1613 |
| BspOI | GCTAGC | 1 cut(s) | 732 |
| BspTNI | GGTCTC | 1 cut(s) | 1662 |
| BsrBI | CCGCTC | 1 cut(s) | 2710 |
| BsrDI | GCAATG | 5 cut(s) | 442, 555, 1145, 1983, 2830 |
| BsrFI | RCCGGY | 1 cut(s) | 682 |
| BsrGI | TGTACA | 2 cut(s) | 697, 2638 |
| BsrI | ACTGG | 7 cut(s) | 249, 877, 934, 1239, 1784, 1941, 2548 |
| BssAI | RCCGGY | 1 cut(s) | 682 |
| BssNI | GRCGYC | 1 cut(s) | 2063 |
| BssT1I | CCWWGG | 8 cut(s) | 809, 907, 1105, 1278, 1518, 1565, 1804, 1834 |
| Bst2UI | CCWGG | 2 cut(s) | 1158, 1458 |
| Bst4CI | ACNGT | 6 cut(s) | 38, 286, 312, 431, 1535, 2742 |
| Bst6I | CTCTTC | 1 cut(s) | 808 |
| BstACI | GRCGYC | 1 cut(s) | 2063 |
| BstAUI | TGTACA | 2 cut(s) | 697, 2638 |
| BstC8I | GCNNGC | 6 cut(s) | 513, 580, 730, 1454, 1586, 2178 |
| BstDEI | CTNAG | 8 cut(s) | 159, 1436, 1493, 2160, 2189, 2541, 2706, 2849 |
| BstDSI | CCRYGG | 3 cut(s) | 1105, 1278, 1804 |
| BstEII | GGTNACC | 1 cut(s) | 1625 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 128 |
| BstF5I | GGATG | 6 cut(s) | 73, 503, 820, 1528, 2434, 2515 |
| BstHHI | GCGC | 1 cut(s) | 1983 |
| BstMAI | GTCTC | 7 cut(s) | 20, 661, 776, 824, 1647, 1662, 2957 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 725, 1147, 1187, 1731, 2418 |
| BstNI | CCWGG | 2 cut(s) | 1158, 1458 |
| BstNSI | RCATGY | 3 cut(s) | 2093, 2309, 2576 |
| BstPI | GGTNACC | 1 cut(s) | 1625 |
| BstSCI | CCNGG | 2 cut(s) | 1156, 1456 |
| BstSFI | CTRYAG | 3 cut(s) | 1383, 2044, 2373 |
| BstSLI | GKGCMC | 2 cut(s) | 138, 190 |
| BstV1I | GCAGC | 3 cut(s) | 116, 1297, 2845 |
| BstV2I | GAAGAC | 2 cut(s) | 621, 2061 |
| BstX2I | RGATCY | 4 cut(s) | 83, 440, 916, 1099 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 389, 1325 |
| BstYI | RGATCY | 4 cut(s) | 83, 440, 916, 1099 |
| Bsu15I | ATCGAT | 1 cut(s) | 62 |
| BsuI | GTATCC | 1 cut(s) | 862 |
| BsuRI | GGCC | 7 cut(s) | 164, 370, 1452, 1462, 1584, 1813, 2943 |
| BsuTUI | ATCGAT | 1 cut(s) | 62 |
| BtgI | CCRYGG | 3 cut(s) | 1105, 1278, 1804 |
| BtgZI | GCGATG | 1 cut(s) | 328 |
| BtrI | CACGTC | 1 cut(s) | 1514 |
| BtsCI | GGATG | 6 cut(s) | 73, 503, 820, 1528, 2434, 2515 |
| BtsI | GCAGTG | 1 cut(s) | 2053 |
| BtsIMutI | CAGTG | 7 cut(s) | 89, 282, 436, 1540, 2002, 2053, 2197 |
| BveI | ACCTGC | 2 cut(s) | 1376, 1613 |
| Cac8I | GCNNGC | 6 cut(s) | 513, 580, 730, 1454, 1586, 2178 |
| CciI | TCATGA | 1 cut(s) | 18 |
| CfoI | GCGC | 1 cut(s) | 1983 |
| Cfr10I | RCCGGY | 1 cut(s) | 682 |
| Cfr13I | GGNCC | 3 cut(s) | 1054, 1460, 1562 |
| ClaI | ATCGAT | 1 cut(s) | 62 |
| CseI | GACGC | 1 cut(s) | 2052 |
| Csp6I | GTAC | 5 cut(s) | 99, 698, 1136, 1315, 2639 |
| CspAI | ACCGGT | 1 cut(s) | 682 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 1500, 1535, 1681, 1716 |
| CviQI | GTAC | 5 cut(s) | 99, 698, 1136, 1315, 2639 |
| DdeI | CTNAG | 8 cut(s) | 159, 1436, 1493, 2160, 2189, 2541, 2706, 2849 |
| DriI | GACNNNNNGTC | 1 cut(s) | 2062 |
| EaeI | YGGCCR | 3 cut(s) | 1450, 1811, 2941 |
| Eam1104I | CTCTTC | 1 cut(s) | 808 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 2062 |
| EarI | CTCTTC | 1 cut(s) | 808 |
| EciI | GGCGGA | 1 cut(s) | 363 |
| Eco130I | CCWWGG | 8 cut(s) | 809, 907, 1105, 1278, 1518, 1565, 1804, 1834 |
| Eco147I | AGGCCT | 1 cut(s) | 370 |
| Eco24I | GRGCYC | 1 cut(s) | 907 |
| Eco31I | GGTCTC | 1 cut(s) | 1662 |
| Eco47I | GGWCC | 2 cut(s) | 1054, 1562 |
| Eco57I | CTGAAG | 3 cut(s) | 501, 1025, 1188 |
| Eco91I | GGTNACC | 1 cut(s) | 1625 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 128 |
| EcoO65I | GGTNACC | 1 cut(s) | 1625 |
| EcoRI | GAATTC | 1 cut(s) | 1991 |
| EcoRII | CCWGG | 2 cut(s) | 1156, 1456 |
| EcoT14I | CCWWGG | 8 cut(s) | 809, 907, 1105, 1278, 1518, 1565, 1804, 1834 |
| EcoT22I | ATGCAT | 2 cut(s) | 2369, 2665 |
| EcoT38I | GRGCYC | 1 cut(s) | 907 |
| ErhI | CCWWGG | 8 cut(s) | 809, 907, 1105, 1278, 1518, 1565, 1804, 1834 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 450, 482, 2067, 2099 |
| FaqI | GGGAC | 4 cut(s) | 1000, 1395, 1500, 2167 |
| FauI | CCCGC | 1 cut(s) | 2703 |
| FauNDI | CATATG | 3 cut(s) | 79, 1618, 2440 |
| FbaI | TGATCA | 1 cut(s) | 2326 |
| FblI | GTMKAC | 1 cut(s) | 1013 |
| Fnu4HI | GCNGC | 4 cut(s) | 72, 105, 1311, 2834 |
| FokI | GGATG | 6 cut(s) | 80, 490, 807, 1535, 2421, 2522 |
| FriOI | GRGCYC | 1 cut(s) | 907 |
| Fsp4HI | GCNGC | 4 cut(s) | 72, 105, 1311, 2834 |
| FspBI | CTAG | 5 cut(s) | 498, 729, 810, 936, 1722 |
| GlaI | GCGC | 1 cut(s) | 1982 |
| GluI | GCNGC | 4 cut(s) | 72, 105, 1311, 2834 |
| GsaI | CCCAGC | 1 cut(s) | 2572 |
| GsuI | CTGGAG | 3 cut(s) | 232, 1454, 1767 |
| HaeIII | GGCC | 7 cut(s) | 164, 370, 1452, 1462, 1584, 1813, 2943 |
| HapII | CCGG | 1 cut(s) | 683 |
| HgaI | GACGC | 1 cut(s) | 2052 |
| HhaI | GCGC | 1 cut(s) | 1983 |
| Hin1I | GRCGYC | 1 cut(s) | 2063 |
| Hin6I | GCGC | 1 cut(s) | 1981 |
| HinP1I | GCGC | 1 cut(s) | 1981 |
| HincII | GTYRAC | 2 cut(s) | 239, 2269 |
| HindII | GTYRAC | 2 cut(s) | 239, 2269 |
| HindIII | AAGCTT | 4 cut(s) | 513, 1366, 1885, 2033 |
| HpaII | CCGG | 1 cut(s) | 683 |
| Hpy166II | GTNNAC | 5 cut(s) | 239, 1014, 1856, 2195, 2269 |
| Hpy188I | TCNGA | 8 cut(s) | 147, 319, 520, 1969, 2408, 2482, 2544, 2850 |
| Hpy8I | GTNNAC | 5 cut(s) | 239, 1014, 1856, 2195, 2269 |
| HpyAV | CCTTC | 7 cut(s) | 454, 1134, 1412, 1728, 2239, 2770, 2800 |
| HpyCH4III | ACNGT | 6 cut(s) | 38, 286, 312, 431, 1535, 2742 |
| HpyCH4IV | ACGT | 1 cut(s) | 1513 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 725, 1147, 1187, 1731, 2418 |
| HpyF3I | CTNAG | 8 cut(s) | 159, 1436, 1493, 2160, 2189, 2541, 2706, 2849 |
| HpySE526I | ACGT | 1 cut(s) | 1513 |
| Hsp92I | GRCGYC | 1 cut(s) | 2063 |
| HspAI | GCGC | 1 cut(s) | 1981 |
| Ksp22I | TGATCA | 1 cut(s) | 2326 |
| LmnI | GCTCC | 6 cut(s) | 484, 902, 1473, 2173, 2470, 2713 |
| Lsp1109I | GCAGC | 3 cut(s) | 116, 1297, 2845 |
| LweI | GCATC | 8 cut(s) | 58, 351, 484, 956, 1339, 1438, 2672, 2863 |
| MaeI | CTAG | 5 cut(s) | 498, 729, 810, 936, 1722 |
| MaeII | ACGT | 1 cut(s) | 1513 |
| MaeIII | GTNAC | 3 cut(s) | 1609, 1625, 2563 |
| MbiI | CCGCTC | 1 cut(s) | 2710 |
| MfeI | CAATTG | 3 cut(s) | 403, 894, 2642 |
| MflI | RGATCY | 4 cut(s) | 83, 440, 916, 1099 |
| MhlI | GDGCHC | 3 cut(s) | 138, 190, 907 |
| MlsI | TGGCCA | 1 cut(s) | 2943 |
| MluNI | TGGCCA | 1 cut(s) | 2943 |
| MlyI | GAGTC | 7 cut(s) | 22, 1610, 1898, 2023, 2149, 2656, 2860 |
| MmeI | TCCRAC | 2 cut(s) | 1670, 2724 |
| Mox20I | TGGCCA | 1 cut(s) | 2943 |
| Mph1103I | ATGCAT | 2 cut(s) | 2369, 2665 |
| MroXI | GAANNNNTTC | 1 cut(s) | 2367 |
| MscI | TGGCCA | 1 cut(s) | 2943 |
| MseI | TTAA | 8 cut(s) | 233, 359, 957, 1370, 1890, 2102, 2210, 2880 |
| Msp20I | TGGCCA | 1 cut(s) | 2943 |
| MspA1I | CMGCKG | 2 cut(s) | 1234, 2836 |
| MspI | CCGG | 1 cut(s) | 683 |
| MspR9I | CCNGG | 2 cut(s) | 1158, 1458 |
| MunI | CAATTG | 3 cut(s) | 403, 894, 2642 |
| Mva1269I | GAATGC | 4 cut(s) | 55, 1665, 2367, 2369 |
| MvaI | CCWGG | 2 cut(s) | 1158, 1458 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 725, 1147, 1187, 1731, 2418 |
| NcoI | CCATGG | 3 cut(s) | 1105, 1278, 1804 |
| NdeI | CATATG | 3 cut(s) | 79, 1618, 2440 |
| NheI | GCTAGC | 1 cut(s) | 728 |
| NlaIV | GGNNCC | 7 cut(s) | 208, 227, 394, 442, 904, 1101, 1330 |
| NmuCI | GTSAC | 2 cut(s) | 1625, 2563 |
| NsiI | ATGCAT | 2 cut(s) | 2369, 2665 |
| NspI | RCATGY | 3 cut(s) | 2093, 2309, 2576 |
| PagI | TCATGA | 1 cut(s) | 18 |
| PaqCI | CACCTGC | 2 cut(s) | 1376, 1613 |
| PceI | AGGCCT | 1 cut(s) | 370 |
| PciI | ACATGT | 1 cut(s) | 2305 |
| PctI | GAATGC | 4 cut(s) | 55, 1665, 2367, 2369 |
| PdmI | GAANNNNTTC | 1 cut(s) | 2367 |
| PfeI | GAWTC | 8 cut(s) | 854, 1078, 1161, 1526, 1689, 1820, 2388, 2522 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1652 |
| PinAI | ACCGGT | 1 cut(s) | 682 |
| PkrI | GCNGC | 4 cut(s) | 73, 106, 1312, 2835 |
| PleI | GAGTC | 7 cut(s) | 21, 1609, 1898, 2022, 2149, 2655, 2859 |
| PpsI | GAGTC | 7 cut(s) | 21, 1609, 1898, 2022, 2149, 2655, 2859 |
| PscI | ACATGT | 1 cut(s) | 2305 |
| PshBI | ATTAAT | 1 cut(s) | 2102 |
| Psp6I | CCWGG | 2 cut(s) | 1156, 1456 |
| PspEI | GGTNACC | 1 cut(s) | 1625 |
| PspFI | CCCAGC | 1 cut(s) | 2568 |
| PspGI | CCWGG | 2 cut(s) | 1156, 1456 |
| PspN4I | GGNNCC | 7 cut(s) | 208, 227, 394, 442, 904, 1101, 1330 |
| PspPI | GGNCC | 3 cut(s) | 1054, 1460, 1562 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 190, 222 |
| PstI | CTGCAG | 2 cut(s) | 1387, 2048 |
| PsuI | RGATCY | 4 cut(s) | 83, 440, 916, 1099 |
| PvuII | CAGCTG | 1 cut(s) | 1234 |
| RsaI | GTAC | 5 cut(s) | 100, 699, 1137, 1316, 2640 |
| RsaNI | GTAC | 5 cut(s) | 99, 698, 1136, 1315, 2639 |
| SaqAI | TTAA | 8 cut(s) | 233, 359, 957, 1370, 1890, 2102, 2210, 2880 |
| SatI | GCNGC | 4 cut(s) | 72, 105, 1311, 2834 |
| Sau96I | GGNCC | 3 cut(s) | 1054, 1460, 1562 |
| SchI | GAGTC | 7 cut(s) | 22, 1610, 1898, 2023, 2149, 2656, 2860 |
| ScrFI | CCNGG | 2 cut(s) | 1158, 1458 |
| SduI | GDGCHC | 3 cut(s) | 138, 190, 907 |
| SfaNI | GCATC | 8 cut(s) | 58, 351, 484, 956, 1339, 1438, 2672, 2863 |
| SfcI | CTRYAG | 3 cut(s) | 1383, 2044, 2373 |
| SinI | GGWCC | 2 cut(s) | 1054, 1562 |
| SmlI | CTYRAG | 1 cut(s) | 456 |
| SmoI | CTYRAG | 1 cut(s) | 456 |
| SseBI | AGGCCT | 1 cut(s) | 370 |
| SsiI | CCGC | 6 cut(s) | 71, 305, 374, 554, 2710, 2836 |
| SspI | AATATT | 2 cut(s) | 862, 955 |
| SspMI | CTAG | 5 cut(s) | 498, 729, 810, 936, 1722 |
| StuI | AGGCCT | 1 cut(s) | 370 |
| StyD4I | CCNGG | 2 cut(s) | 1156, 1456 |
| StyI | CCWWGG | 8 cut(s) | 809, 907, 1105, 1278, 1518, 1565, 1804, 1834 |
| TaaI | ACNGT | 6 cut(s) | 38, 286, 312, 431, 1535, 2742 |
| TaiI | ACGT | 1 cut(s) | 1516 |
| TatI | WGTACW | 2 cut(s) | 697, 2638 |
| TauI | GCSGC | 1 cut(s) | 74 |
| TfiI | GAWTC | 8 cut(s) | 854, 1078, 1161, 1526, 1689, 1820, 2388, 2522 |
| Tru1I | TTAA | 8 cut(s) | 233, 359, 957, 1370, 1890, 2102, 2210, 2880 |
| Tru9I | TTAA | 8 cut(s) | 233, 359, 957, 1370, 1890, 2102, 2210, 2880 |
| TscAI | CASTG | 7 cut(s) | 96, 289, 436, 1540, 2002, 2053, 2197 |
| TseFI | GTSAC | 2 cut(s) | 1625, 2563 |
| TseI | GCWGC | 3 cut(s) | 104, 1310, 2833 |
| Tsp45I | GTSAC | 2 cut(s) | 1625, 2563 |
| TspRI | CASTG | 7 cut(s) | 96, 289, 436, 1540, 2002, 2053, 2197 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1652 |
| VpaK11BI | GGWCC | 2 cut(s) | 1054, 1562 |
| VspI | ATTAAT | 1 cut(s) | 2102 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 128 |
| XapI | RAATTY | 5 cut(s) | 754, 1634, 1955, 1991, 2947 |
| XbaI | TCTAGA | 1 cut(s) | 935 |
| XceI | RCATGY | 3 cut(s) | 2093, 2309, 2576 |
| XmaJI | CCTAGG | 1 cut(s) | 809 |
| XmiI | GTMKAC | 1 cut(s) | 1013 |
| XmnI | GAANNNNTTC | 1 cut(s) | 2367 |
| XspI | CTAG | 5 cut(s) | 498, 729, 810, 936, 1722 |
| Zsp2I | ATGCAT | 2 cut(s) | 2369, 2665 |