RchiOBHm_Chr7g0238801

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000169
Physical Location & Seq
Reverse (-)
64294810 .. 64295520
711 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ21398

Sequence Viewer

Length: 711 bp
ATGAAATTTCAGTTCGAGCATCTGCGGGGGAGATGCACTCAATGTGGTTTGATCACACATGCTGGACTTGCTTGTGAGGATCCCACTGCAGTAAACCCTATACCTAGGGTTTTACACTTTCCCGGAGTTTTGACCTCAGGGAATTCCTTTGCCTTCTCTGCTAAACATCAGGGAGACCTTCTCTCTACTTCCCCGACCGTCCCAAGGAAGAAGCGGCCTGGTTTTCGTCGAGTGGAGCGTCCGACCTCACAGCTTTCTTCTCCCAGTGAGCCGGCTCTAACAGTAGTCAATACTGGGGTGGCAGACATTGCTTTGCCGCATGGTTTGGCGAGTAAAGAAAGTCTAGGTGAGGTTCCCAAACTGGCTATTTCTGGTGACATTGTTATTGCTCCAGGTACACAGAAGCAACAACCTGTTTTGCCGTCCAAAAAGCGGGAGCGTGGTGGTGCTTGCCATCCTAGTCCCAAGAAATTTAAAACAATCTTGGGTGGCAAGATTCCAACACTGCATGCTGAGGCACTTGGCCTCATTGAGGAGGATGGCGACCTTACTTTGGTCTCGTTGAAAAAGAAGTCTGGTAGGCCTCTTGGAAGCAAGAATAAGACTCAACGTGCAAACAAGAAGCTAGATGGTACTCCCCTGAAGATTACTTATCCTACTAGTACTGAAACTGGTCCTAGCCCTAGGGACAAGGGCAAAGGAAAGATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

236

Amino Acids

25.15

Weight (kDa)

10.05

Isoelectric Point (pI)

45.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000169)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13681 FvH4_3g25832 FvH4_3g26062 FvH4_4g08041 FvH4_4g13361 FvH4_4g16721 FvH4_4g21881 FvH4_6g07632 FvH4_6g17062 FvH4_6g26370 FvH4_7g07641
rosa_chinensis RchiOBHm_Chr1g0320861 RchiOBHm_Chr2g0109251 RchiOBHm_Chr3g0472781 RchiOBHm_Chr6g0288921 RchiOBHm_Chr7g0191711 RchiOBHm_Chr7g0238801
rosa_laevigata RLG00000007550 RLG00000036731
rosa_multiflora Rmu_co8018808.1_g000001 Rmu_co8401665.1_g000001 Rmu_co8461051.1_g000001 Rmu_sc0000144.1_g000042 Rmu_sc0000144.1_g000051 Rmu_sc0000160.1_g000018 Rmu_sc0000245.1_g000011 Rmu_sc0000299.1_g000021 Rmu_sc0000348.1_g000003 Rmu_sc0000367.1_g000120 Rmu_sc0000424.1_g000037 Rmu_sc0000427.1_g000006 Rmu_sc0000427.1_g000023 Rmu_sc0000427.1_g000037 Rmu_sc0000604.1_g000005 Rmu_sc0000605.1_g000060 Rmu_sc0000621.1_g000030 Rmu_sc0000693.1_g000017 Rmu_sc0000708.1_g000012 Rmu_sc0000918.1_g000031 Rmu_sc0000953.1_g000027 Rmu_sc0001030.1_g000008 Rmu_sc0001030.1_g000011 Rmu_sc0001051.1_g000026 Rmu_sc0001055.1_g000001 Rmu_sc0001081.1_g000001 Rmu_sc0001175.1_g000002 Rmu_sc0001176.1_g000026 Rmu_sc0001181.1_g000010 Rmu_sc0001225.1_g000003 Rmu_sc0001371.1_g000008 Rmu_sc0001433.1_g000012 Rmu_sc0001507.1_g000009 Rmu_sc0001643.1_g000014 Rmu_sc0001879.1_g000002 Rmu_sc0001890.1_g000006 Rmu_sc0002129.1_g000039 Rmu_sc0002356.1_g000008 Rmu_sc0002358.1_g000003 Rmu_sc0002553.1_g000024 Rmu_sc0002826.1_g000007 Rmu_sc0002872.1_g000007 Rmu_sc0003323.1_g000026 Rmu_sc0003410.1_g000001 Rmu_sc0003511.1_g000042 Rmu_sc0003541.1_g000036 Rmu_sc0003605.1_g000048 Rmu_sc0003689.1_g000014 Rmu_sc0003692.1_g000010 Rmu_sc0003720.1_g000001 Rmu_sc0003813.1_g000003 Rmu_sc0003872.1_g000005 Rmu_sc0004010.1_g000012 Rmu_sc0004165.1_g000092 Rmu_sc0004230.1_g000013 Rmu_sc0004318.1_g000020 Rmu_sc0004353.1_g000004 Rmu_sc0004617.1_g000005 Rmu_sc0004617.1_g000006 Rmu_sc0004658.1_g000005 Rmu_sc0005356.1_g000008 Rmu_sc0005994.1_g000014 Rmu_sc0006388.1_g000004 Rmu_sc0006674.1_g000020 Rmu_sc0006898.1_g000008 Rmu_sc0007286.1_g000005 Rmu_sc0007476.1_g000002 Rmu_sc0007671.1_g000005 Rmu_sc0007991.1_g000008 Rmu_sc0008131.1_g000008 Rmu_sc0008163.1_g000011 Rmu_sc0008322.1_g000004 Rmu_sc0008334.1_g000017 Rmu_sc0008835.1_g000009 Rmu_sc0008835.1_g000011 Rmu_sc0009954.1_g000006 Rmu_sc0010050.1_g000001 Rmu_sc0010317.1_g000011 Rmu_sc0010426.1_g000002 Rmu_sc0011111.1_g000005 Rmu_sc0014614.1_g000003 Rmu_sc0014688.1_g000002 Rmu_sc0015167.1_g000003 Rmu_sc0015936.1_g000003 Rmu_sc0017323.1_g000003 Rmu_sc0018541.1_g000001 Rmu_sc0019370.1_g000003 Rmu_sc0020444.1_g000001 Rmu_sc0020600.1_g000003 Rmu_sc0021238.1_g000001 Rmu_sc0022909.1_g000001 Rmu_sc0030397.1_g000001 Rmu_sc0030484.1_g000002 Rmu_sc0035139.1_g000001 Rmu_sc0035719.1_g000001 Rmu_ssc0000287.1_g000010 Rmu_ssc0000451.1_g000005
rosa_roxburghii Rroxscaffold_1G00046590 Rroxscaffold_1G00050100 Rroxscaffold_2G00079390 Rroxscaffold_2G00088790 Rroxscaffold_2G00097170 Rroxscaffold_2G00126350 Rroxscaffold_3G00221550 Rroxscaffold_3G00222700 Rroxscaffold_3G00236390 Rroxscaffold_3G00254000 Rroxscaffold_3G00260090 Rroxscaffold_3G00263600 Rroxscaffold_5G00336900
rosa_rugosa Rorug01G0048200 Rorug01G0172000 Rorug01G0294000 Rorug01G0308200 Rorug01G0355300 Rorug02G0000900 Rorug02G0129600 Rorug02G0136800 Rorug02G0179700 Rorug02G0251500 Rorug02G0305800 Rorug02G0305900 Rorug02G0373800 Rorug02G0396100 Rorug02G0411300 Rorug02G0411400 Rorug02G0411500 Rorug02G0460200 Rorug03G0187400 Rorug03G0299000 Rorug04G0041700 Rorug04G0130800 Rorug04G0168300 Rorug04G0198700 Rorug05G0095100 Rorug05G0194100 Rorug05G0205300 Rorug05G0235300 Rorug06G0088100.1 Rorug06G0120100 Rorug06G0164300 Rorug07G0163600 Rorug07G0163700 Rorug07G0236200 Rorug07G0307200 RorugPtG0006100
rosa_samantha Rh1DG036900 Rh3BG176200 Rh4CG455100 Rh6AG142400 Rh6AG263000 Rh6CG138900 Rh6DG126200 Rh7CG393300 Rh7CG447500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 25, 214, 317, 433
AclWI GGATC 2 cut(s) 74, 87
AcsI RAATTY 3 cut(s) 5, 142, 470
AcuI CTGAAG 1 cut(s) 662
AfaI GTAC 3 cut(s) 397, 634, 664
AfiI CCNNNNNNNGG 4 cut(s) 204, 432, 532, 553
AgsI TTSAA 1 cut(s) 565
AhlI ACTAGT 1 cut(s) 659
AjnI CCWGG 2 cut(s) 217, 391
AluBI AGCT 2 cut(s) 253, 625
AluI AGCT 2 cut(s) 253, 625
Alw26I GTCTC 2 cut(s) 168, 562
AlwI GGATC 2 cut(s) 74, 87
AoxI GGCC 3 cut(s) 215, 523, 581
ApoI RAATTY 3 cut(s) 5, 142, 470
AspA2I CCTAGG 2 cut(s) 104, 683
AspS9I GGNCC 1 cut(s) 674
AsuC2I CCSGG 1 cut(s) 123
AsuHPI GGTGA 2 cut(s) 359, 386
AvaII GGWCC 1 cut(s) 674
AvrII CCTAGG 2 cut(s) 104, 683
AxyI CCTNAGG 1 cut(s) 136
BamHI GGATCC 1 cut(s) 79
BbvCI CCTCAGC 1 cut(s) 513
BccI CCATC 3 cut(s) 462, 533, 623
BceAI ACGGC 1 cut(s) 406
BciT130I CCWGG 2 cut(s) 219, 393
BclI TGATCA 1 cut(s) 51
BcnI CCSGG 1 cut(s) 123
BcoDI GTCTC 2 cut(s) 168, 562
BcuI ACTAGT 1 cut(s) 659
BfaI CTAG 7 cut(s) 105, 344, 459, 626, 660, 678, 684
BfmI CTRYAG 1 cut(s) 87
BisI GCNGC 2 cut(s) 215, 317
BlnI CCTAGG 2 cut(s) 104, 683
BlsI GCNGC 2 cut(s) 216, 318
BmcAI AGTACT 1 cut(s) 664
Bme1390I CCNGG 3 cut(s) 123, 219, 393
Bme18I GGWCC 1 cut(s) 674
BmgT120I GGNCC 1 cut(s) 674
BmiI GGNNCC 2 cut(s) 81, 354
BmrFI CCNGG 3 cut(s) 123, 219, 393
BmrI ACTGGG 2 cut(s) 258, 303
BmsI GCATC 2 cut(s) 23, 28
BmuI ACTGGG 2 cut(s) 258, 303
BplI GAGNNNNNCTC 4 cut(s) 22, 54, 165, 197
BpmI CTGGAG 1 cut(s) 375
Bpu10I CCTNAGC 1 cut(s) 513
BpuMI CCSGG 1 cut(s) 123
BsaI GGTCTC 2 cut(s) 168, 562
BsaJI CCNNGG 3 cut(s) 104, 203, 683
Bsc4I CCNNNNNNNGG 4 cut(s) 204, 432, 532, 553
Bse118I RCCGGY 1 cut(s) 271
Bse1I ACTGG 4 cut(s) 264, 298, 366, 676
Bse21I CCTNAGG 1 cut(s) 136
Bse3DI GCAATG 1 cut(s) 306
BseBI CCWGG 2 cut(s) 219, 393
BseDI CCNNGG 3 cut(s) 104, 203, 683
BseGI GGATG 2 cut(s) 454, 544
BseLI CCNNNNNNNGG 4 cut(s) 204, 432, 532, 553
BseMI GCAATG 1 cut(s) 306
BseMII CTCAG 2 cut(s) 150, 504
BseNI ACTGG 4 cut(s) 264, 298, 366, 676
BseRI GAGGAG 1 cut(s) 548
Bsh1285I CGRYCG 1 cut(s) 198
BshFI GGCC 3 cut(s) 217, 525, 583
BsiEI CGRYCG 1 cut(s) 198
BsiSI CCGG 2 cut(s) 123, 272
BslFI GGGAC 3 cut(s) 185, 447, 701
BslI CCNNNNNNNGG 4 cut(s) 204, 432, 532, 553
BsmAI GTCTC 2 cut(s) 168, 562
BsmFI GGGAC 3 cut(s) 185, 447, 701
BsnI GGCC 3 cut(s) 217, 525, 583
Bso31I GGTCTC 2 cut(s) 168, 562
Bsp143I GATC 2 cut(s) 51, 79
BspACI CCGC 4 cut(s) 25, 214, 317, 433
BspANI GGCC 3 cut(s) 217, 525, 583
BspCNI CTCAG 2 cut(s) 149, 505
BspLI GGNNCC 2 cut(s) 81, 354
BspMAI CTGCAG 1 cut(s) 91
BspPI GGATC 2 cut(s) 74, 87
BspTNI GGTCTC 2 cut(s) 168, 562
BsrDI GCAATG 1 cut(s) 306
BsrFI RCCGGY 1 cut(s) 271
BsrI ACTGG 4 cut(s) 264, 298, 366, 676
BssAI RCCGGY 1 cut(s) 271
BssECI CCNNGG 3 cut(s) 104, 203, 683
BssMI GATC 2 cut(s) 51, 79
BssT1I CCWWGG 3 cut(s) 104, 203, 683
Bst2UI CCWGG 2 cut(s) 219, 393
Bst4CI ACNGT 2 cut(s) 199, 283
BstAPI GCANNNNNTGC 1 cut(s) 308
BstC8I GCNNGC 3 cut(s) 273, 451, 510
BstDEI CTNAG 2 cut(s) 136, 513
BstENI CCTNNNNNAGG 1 cut(s) 530
BstF5I GGATG 2 cut(s) 454, 544
BstKTI GATC 2 cut(s) 54, 82
BstMAI GTCTC 2 cut(s) 168, 562
BstMBI GATC 2 cut(s) 51, 79
BstMCI CGRYCG 1 cut(s) 198
BstMWI GCNNNNNNNGC 3 cut(s) 68, 158, 308
BstNI CCWGG 2 cut(s) 219, 393
BstNSI RCATGY 2 cut(s) 62, 512
BstSCI CCNGG 3 cut(s) 121, 217, 391
BstSFI CTRYAG 1 cut(s) 87
BstX2I RGATCY 1 cut(s) 79
BstYI RGATCY 1 cut(s) 79
Bsu36I CCTNAGG 1 cut(s) 136
BsuRI GGCC 3 cut(s) 217, 525, 583
BtsCI GGATG 2 cut(s) 454, 544
BtsI GCAGTG 2 cut(s) 84, 503
BtsIMutI CAGTG 3 cut(s) 84, 271, 503
Cac8I GCNNGC 3 cut(s) 273, 451, 510
Cfr10I RCCGGY 1 cut(s) 271
Cfr13I GGNCC 1 cut(s) 674
CseI GACGC 1 cut(s) 227
Csp6I GTAC 3 cut(s) 396, 633, 663
CviAII CATG 3 cut(s) 59, 320, 509
CviJI RGCY 9 cut(s) 217, 253, 271, 275, 365, 525, 583, 625, 681
CviKI_1 RGCY 9 cut(s) 217, 253, 271, 275, 365, 525, 583, 625, 681
CviQI GTAC 3 cut(s) 396, 633, 663
DdeI CTNAG 2 cut(s) 136, 513
DpnI GATC 2 cut(s) 53, 81
DpnII GATC 2 cut(s) 51, 79
DraI TTTAAA 1 cut(s) 475
Eco130I CCWWGG 3 cut(s) 104, 203, 683
Eco147I AGGCCT 1 cut(s) 583
Eco31I GGTCTC 2 cut(s) 168, 562
Eco47I GGWCC 1 cut(s) 674
Eco57I CTGAAG 1 cut(s) 662
Eco81I CCTNAGG 1 cut(s) 136
EcoNI CCTNNNNNAGG 1 cut(s) 530
EcoRI GAATTC 1 cut(s) 142
EcoRII CCWGG 2 cut(s) 217, 391
EcoT14I CCWWGG 3 cut(s) 104, 203, 683
ErhI CCWWGG 3 cut(s) 104, 203, 683
FaeI CATG 3 cut(s) 62, 323, 512
FaiI YATR 4 cut(s) 60, 101, 321, 510
FaqI GGGAC 3 cut(s) 185, 447, 701
FatI CATG 3 cut(s) 58, 319, 508
FauI CCCGC 2 cut(s) 18, 426
FbaI TGATCA 1 cut(s) 51
Fnu4HI GCNGC 2 cut(s) 215, 317
FokI GGATG 2 cut(s) 441, 551
Fsp4HI GCNGC 2 cut(s) 215, 317
FspBI CTAG 7 cut(s) 105, 344, 459, 626, 660, 678, 684
GluI GCNGC 2 cut(s) 215, 317
GsuI CTGGAG 1 cut(s) 375
HaeIII GGCC 3 cut(s) 217, 525, 583
HapII CCGG 2 cut(s) 123, 272
HgaI GACGC 1 cut(s) 227
Hin1II CATG 3 cut(s) 62, 323, 512
HinfI GANTC 2 cut(s) 496, 604
HpaII CCGG 2 cut(s) 123, 272
HphI GGTGA 2 cut(s) 359, 386
Hpy166II GTNNAC 2 cut(s) 94, 398
Hpy188I TCNGA 1 cut(s) 243
Hpy8I GTNNAC 2 cut(s) 94, 398
Hpy99I CGWCG 1 cut(s) 231
HpyAV CCTTC 2 cut(s) 163, 188
HpyCH4III ACNGT 2 cut(s) 199, 283
HpyCH4IV ACGT 1 cut(s) 610
HpyCH4V TGCA 4 cut(s) 36, 89, 508, 614
HpyF10VI GCNNNNNNNGC 3 cut(s) 68, 158, 308
HpyF3I CTNAG 2 cut(s) 136, 513
HpySE526I ACGT 1 cut(s) 610
Hsp92II CATG 3 cut(s) 62, 323, 512
KroI GCCGGC 1 cut(s) 271
KroNI GCCGGC 1 cut(s) 273
Ksp22I TGATCA 1 cut(s) 51
Kzo9I GATC 2 cut(s) 51, 79
LmnI GCTCC 3 cut(s) 235, 394, 436
LweI GCATC 2 cut(s) 23, 28
MaeI CTAG 7 cut(s) 105, 344, 459, 626, 660, 678, 684
MaeII ACGT 1 cut(s) 610
MaeIII GTNAC 1 cut(s) 374
MalI GATC 2 cut(s) 53, 81
MboI GATC 2 cut(s) 51, 79
MboII GAAGA 3 cut(s) 220, 249, 655
MflI RGATCY 1 cut(s) 79
MluCI AATT 3 cut(s) 5, 142, 470
MlyI GAGTC 1 cut(s) 598
MmeI TCCRAC 2 cut(s) 266, 524
MnlI CCTC 9 cut(s) 70, 145, 256, 343, 508, 526, 529, 536, 594
MroNI GCCGGC 1 cut(s) 271
MseI TTAA 2 cut(s) 474, 709
MspI CCGG 2 cut(s) 123, 272
MspR9I CCNGG 3 cut(s) 123, 219, 393
MvaI CCWGG 2 cut(s) 219, 393
MwoI GCNNNNNNNGC 3 cut(s) 68, 158, 308
NaeI GCCGGC 1 cut(s) 273
NciI CCSGG 1 cut(s) 123
NdeII GATC 2 cut(s) 51, 79
NgoMIV GCCGGC 1 cut(s) 271
NlaIII CATG 3 cut(s) 62, 323, 512
NlaIV GGNNCC 2 cut(s) 81, 354
NmuCI GTSAC 1 cut(s) 374
NspI RCATGY 2 cut(s) 62, 512
PaeI GCATGC 1 cut(s) 512
PceI AGGCCT 1 cut(s) 583
PcsI WCGNNNNNNNCGW 1 cut(s) 235
PdiI GCCGGC 1 cut(s) 273
PfeI GAWTC 1 cut(s) 496
PfoI TCCNGGA 1 cut(s) 121
PkrI GCNGC 2 cut(s) 216, 318
PleI GAGTC 1 cut(s) 598
PpsI GAGTC 1 cut(s) 598
Psp6I CCWGG 2 cut(s) 217, 391
PspGI CCWGG 2 cut(s) 217, 391
PspN4I GGNNCC 2 cut(s) 81, 354
PspPI GGNCC 1 cut(s) 674
PstI CTGCAG 1 cut(s) 91
PsuI RGATCY 1 cut(s) 79
RsaI GTAC 3 cut(s) 397, 634, 664
RsaNI GTAC 3 cut(s) 396, 633, 663
SaqAI TTAA 2 cut(s) 474, 709
SatI GCNGC 2 cut(s) 215, 317
Sau3AI GATC 2 cut(s) 51, 79
Sau96I GGNCC 1 cut(s) 674
ScaI AGTACT 1 cut(s) 664
SchI GAGTC 1 cut(s) 598
ScrFI CCNGG 3 cut(s) 123, 219, 393
SfaNI GCATC 2 cut(s) 23, 28
SfcI CTRYAG 1 cut(s) 87
SinI GGWCC 1 cut(s) 674
SpeI ACTAGT 1 cut(s) 659
SphI GCATGC 1 cut(s) 512
Sse9I AATT 3 cut(s) 5, 142, 470
SseBI AGGCCT 1 cut(s) 583
SsiI CCGC 4 cut(s) 25, 214, 317, 433
SspMI CTAG 7 cut(s) 105, 344, 459, 626, 660, 678, 684
StuI AGGCCT 1 cut(s) 583
StyD4I CCNGG 3 cut(s) 121, 217, 391
StyI CCWWGG 3 cut(s) 104, 203, 683
TaaI ACNGT 2 cut(s) 199, 283
TaiI ACGT 1 cut(s) 613
TaqI TCGA 2 cut(s) 15, 229
TasI AATT 3 cut(s) 5, 142, 470
TatI WGTACW 1 cut(s) 662
TauI GCSGC 2 cut(s) 217, 319
TfiI GAWTC 1 cut(s) 496
Tru1I TTAA 2 cut(s) 474, 709
Tru9I TTAA 2 cut(s) 474, 709
TscAI CASTG 3 cut(s) 91, 271, 510
TseFI GTSAC 1 cut(s) 374
Tsp45I GTSAC 1 cut(s) 374
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 3 cut(s) 91, 271, 510
VpaK11BI GGWCC 1 cut(s) 674
XagI CCTNNNNNAGG 1 cut(s) 530
XapI RAATTY 3 cut(s) 5, 142, 470
XceI RCATGY 2 cut(s) 62, 512
XmaJI CCTAGG 2 cut(s) 104, 683
XspI CTAG 7 cut(s) 105, 344, 459, 626, 660, 678, 684
ZrmI AGTACT 1 cut(s) 664
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.