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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 38 |
| Acc16I | TGCGCA | 1 cut(s) | 315 |
| Acc36I | ACCTGC | 2 cut(s) | 38, 232 |
| AciI | CCGC | 1 cut(s) | 343 |
| AclWI | GGATC | 1 cut(s) | 161 |
| AcoI | YGGCCR | 2 cut(s) | 186, 340 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 32, 47, 114 |
| AflIII | ACRYGT | 1 cut(s) | 301 |
| AgsI | TTSAA | 2 cut(s) | 274, 383 |
| AjnI | CCWGG | 1 cut(s) | 72 |
| AluBI | AGCT | 1 cut(s) | 142 |
| AluI | AGCT | 1 cut(s) | 142 |
| Alw21I | GWGCWC | 1 cut(s) | 229 |
| AlwI | GGATC | 1 cut(s) | 161 |
| AoxI | GGCC | 4 cut(s) | 75, 186, 267, 340 |
| ApeKI | GCWGC | 1 cut(s) | 197 |
| AspLEI | GCGC | 1 cut(s) | 316 |
| AspS9I | GGNCC | 2 cut(s) | 35, 249 |
| AvaII | GGWCC | 2 cut(s) | 35, 249 |
| AxyI | CCTNAGG | 1 cut(s) | 327 |
| Bbv12I | GWGCWC | 1 cut(s) | 229 |
| BbvCI | CCTCAGC | 1 cut(s) | 201 |
| BbvI | GCAGC | 1 cut(s) | 184 |
| BccI | CCATC | 1 cut(s) | 178 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 179, 213 |
| BciT130I | CCWGG | 1 cut(s) | 74 |
| BfaI | CTAG | 1 cut(s) | 294 |
| BfmI | CTRYAG | 2 cut(s) | 45, 219 |
| BfuAI | ACCTGC | 2 cut(s) | 38, 232 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 194, 362 |
| BisI | GCNGC | 2 cut(s) | 198, 343 |
| BlsI | GCNGC | 2 cut(s) | 199, 344 |
| Bme1390I | CCNGG | 1 cut(s) | 74 |
| Bme18I | GGWCC | 2 cut(s) | 35, 249 |
| BmgT120I | GGNCC | 2 cut(s) | 35, 249 |
| BmiI | GGNNCC | 2 cut(s) | 250, 324 |
| BmrFI | CCNGG | 1 cut(s) | 74 |
| BmsI | GCATC | 1 cut(s) | 244 |
| Bpu10I | CCTNAGC | 2 cut(s) | 113, 201 |
| BsaBI | GATNNNNATC | 1 cut(s) | 154 |
| BsaJI | CCNNGG | 2 cut(s) | 72, 183 |
| BsaWI | WCCGGW | 1 cut(s) | 260 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 32, 47, 114 |
| Bse118I | RCCGGY | 1 cut(s) | 338 |
| Bse21I | CCTNAGG | 1 cut(s) | 327 |
| Bse8I | GATNNNNATC | 1 cut(s) | 154 |
| BseBI | CCWGG | 1 cut(s) | 74 |
| BseDI | CCNNGG | 2 cut(s) | 72, 183 |
| BseGI | GGATG | 1 cut(s) | 132 |
| BseJI | GATNNNNATC | 1 cut(s) | 154 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 32, 47, 114 |
| BseMII | CTCAG | 3 cut(s) | 127, 192, 366 |
| BseRI | GAGGAG | 1 cut(s) | 91 |
| BseX3I | CGGCCG | 1 cut(s) | 340 |
| BseXI | GCAGC | 1 cut(s) | 184 |
| Bsh1285I | CGRYCG | 2 cut(s) | 339, 343 |
| BshFI | GGCC | 4 cut(s) | 77, 188, 269, 342 |
| BsiEI | CGRYCG | 2 cut(s) | 339, 343 |
| BsiHKAI | GWGCWC | 1 cut(s) | 229 |
| BsiSI | CCGG | 2 cut(s) | 261, 339 |
| BslFI | GGGAC | 1 cut(s) | 262 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 32, 47, 114 |
| BsmFI | GGGAC | 1 cut(s) | 262 |
| BsnI | GGCC | 4 cut(s) | 77, 188, 269, 342 |
| Bsp1286I | GDGCHC | 1 cut(s) | 229 |
| Bsp143I | GATC | 2 cut(s) | 149, 166 |
| BspACI | CCGC | 1 cut(s) | 343 |
| BspANI | GGCC | 4 cut(s) | 77, 188, 269, 342 |
| BspCNI | CTCAG | 3 cut(s) | 126, 193, 367 |
| BspLI | GGNNCC | 2 cut(s) | 250, 324 |
| BspMAI | CTGCAG | 1 cut(s) | 49 |
| BspMI | ACCTGC | 2 cut(s) | 38, 232 |
| BspPI | GGATC | 1 cut(s) | 161 |
| BsrFI | RCCGGY | 1 cut(s) | 338 |
| BssAI | RCCGGY | 1 cut(s) | 338 |
| BssECI | CCNNGG | 2 cut(s) | 72, 183 |
| BssMI | GATC | 2 cut(s) | 149, 166 |
| Bst2UI | CCWGG | 1 cut(s) | 74 |
| Bst4CI | ACNGT | 1 cut(s) | 27 |
| BstC8I | GCNNGC | 1 cut(s) | 79 |
| BstDEI | CTNAG | 4 cut(s) | 113, 201, 327, 375 |
| BstDSI | CCRYGG | 1 cut(s) | 183 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 112 |
| BstF5I | GGATG | 1 cut(s) | 132 |
| BstHHI | GCGC | 1 cut(s) | 316 |
| BstKTI | GATC | 2 cut(s) | 152, 169 |
| BstMBI | GATC | 2 cut(s) | 149, 166 |
| BstMCI | CGRYCG | 2 cut(s) | 339, 343 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 194, 238, 322, 362 |
| BstNI | CCWGG | 1 cut(s) | 74 |
| BstNSI | RCATGY | 2 cut(s) | 305, 356 |
| BstSCI | CCNGG | 1 cut(s) | 72 |
| BstSFI | CTRYAG | 2 cut(s) | 45, 219 |
| BstV1I | GCAGC | 1 cut(s) | 184 |
| BstZI | CGGCCG | 1 cut(s) | 340 |
| Bsu36I | CCTNAGG | 1 cut(s) | 327 |
| BsuRI | GGCC | 4 cut(s) | 77, 188, 269, 342 |
| BtgI | CCRYGG | 1 cut(s) | 183 |
| BtsCI | GGATG | 1 cut(s) | 132 |
| BtsIMutI | CAGTG | 1 cut(s) | 372 |
| BveI | ACCTGC | 2 cut(s) | 38, 232 |
| Cac8I | GCNNGC | 1 cut(s) | 79 |
| CfoI | GCGC | 1 cut(s) | 316 |
| Cfr10I | RCCGGY | 1 cut(s) | 338 |
| Cfr13I | GGNCC | 2 cut(s) | 35, 249 |
| CspCI | CAANNNNNGTGG | 1 cut(s) | 361 |
| CviAII | CATG | 2 cut(s) | 302, 353 |
| DdeI | CTNAG | 4 cut(s) | 113, 201, 327, 375 |
| DpnI | GATC | 2 cut(s) | 151, 168 |
| DpnII | GATC | 2 cut(s) | 149, 166 |
| EaeI | YGGCCR | 2 cut(s) | 186, 340 |
| EagI | CGGCCG | 1 cut(s) | 340 |
| EclXI | CGGCCG | 1 cut(s) | 340 |
| Eco47I | GGWCC | 2 cut(s) | 35, 249 |
| Eco52I | CGGCCG | 1 cut(s) | 340 |
| Eco81I | CCTNAGG | 1 cut(s) | 327 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 112 |
| EcoRII | CCWGG | 1 cut(s) | 72 |
| FaeI | CATG | 2 cut(s) | 305, 356 |
| FaiI | YATR | 4 cut(s) | 23, 194, 303, 354 |
| FaqI | GGGAC | 1 cut(s) | 262 |
| FatI | CATG | 2 cut(s) | 301, 352 |
| Fnu4HI | GCNGC | 2 cut(s) | 198, 343 |
| FokI | GGATG | 1 cut(s) | 119 |
| Fsp4HI | GCNGC | 2 cut(s) | 198, 343 |
| FspBI | CTAG | 1 cut(s) | 294 |
| FspI | TGCGCA | 1 cut(s) | 315 |
| GlaI | GCGC | 1 cut(s) | 315 |
| GluI | GCNGC | 2 cut(s) | 198, 343 |
| HaeIII | GGCC | 4 cut(s) | 77, 188, 269, 342 |
| HapII | CCGG | 2 cut(s) | 261, 339 |
| HhaI | GCGC | 1 cut(s) | 316 |
| Hin1II | CATG | 2 cut(s) | 305, 356 |
| Hin6I | GCGC | 1 cut(s) | 314 |
| HinP1I | GCGC | 1 cut(s) | 314 |
| HinfI | GANTC | 1 cut(s) | 290 |
| HpaII | CCGG | 2 cut(s) | 261, 339 |
| Hpy188I | TCNGA | 4 cut(s) | 137, 160, 289, 309 |
| Hpy188III | TCNNGA | 1 cut(s) | 115 |
| HpyAV | CCTTC | 1 cut(s) | 280 |
| HpyCH4III | ACNGT | 1 cut(s) | 27 |
| HpyCH4V | TGCA | 1 cut(s) | 47 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 194, 238, 322, 362 |
| HpyF3I | CTNAG | 4 cut(s) | 113, 201, 327, 375 |
| Hsp92II | CATG | 2 cut(s) | 305, 356 |
| HspAI | GCGC | 1 cut(s) | 314 |
| Kzo9I | GATC | 2 cut(s) | 149, 166 |
| LmnI | GCTCC | 2 cut(s) | 224, 322 |
| Lsp1109I | GCAGC | 1 cut(s) | 184 |
| LweI | GCATC | 1 cut(s) | 244 |
| MaeI | CTAG | 1 cut(s) | 294 |
| MaeIII | GTNAC | 1 cut(s) | 331 |
| MalI | GATC | 2 cut(s) | 151, 168 |
| MboI | GATC | 2 cut(s) | 149, 166 |
| MboII | GAAGA | 1 cut(s) | 130 |
| MhlI | GDGCHC | 1 cut(s) | 229 |
| MmeI | TCCRAC | 1 cut(s) | 65 |
| MnlI | CCTC | 3 cut(s) | 48, 112, 196 |
| MspI | CCGG | 2 cut(s) | 261, 339 |
| MspR9I | CCNGG | 1 cut(s) | 74 |
| MvaI | CCWGG | 1 cut(s) | 74 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 194, 238, 322, 362 |
| NdeII | GATC | 2 cut(s) | 149, 166 |
| NlaIII | CATG | 2 cut(s) | 305, 356 |
| NlaIV | GGNNCC | 2 cut(s) | 250, 324 |
| NmeAIII | GCCGAG | 2 cut(s) | 107, 341 |
| NsbI | TGCGCA | 1 cut(s) | 315 |
| NspI | RCATGY | 2 cut(s) | 305, 356 |
| PaqCI | CACCTGC | 1 cut(s) | 38 |
| PciI | ACATGT | 1 cut(s) | 301 |
| PfeI | GAWTC | 1 cut(s) | 290 |
| PkrI | GCNGC | 2 cut(s) | 199, 344 |
| PscI | ACATGT | 1 cut(s) | 301 |
| Psp6I | CCWGG | 1 cut(s) | 72 |
| PspGI | CCWGG | 1 cut(s) | 72 |
| PspN4I | GGNNCC | 2 cut(s) | 250, 324 |
| PspPI | GGNCC | 2 cut(s) | 35, 249 |
| PstI | CTGCAG | 1 cut(s) | 49 |
| SatI | GCNGC | 2 cut(s) | 198, 343 |
| Sau3AI | GATC | 2 cut(s) | 149, 166 |
| Sau96I | GGNCC | 2 cut(s) | 35, 249 |
| ScrFI | CCNGG | 1 cut(s) | 74 |
| SduI | GDGCHC | 1 cut(s) | 229 |
| SetI | ASST | 6 cut(s) | 52, 144, 220, 246, 279, 333 |
| SfaNI | GCATC | 1 cut(s) | 244 |
| SfcI | CTRYAG | 2 cut(s) | 45, 219 |
| SinI | GGWCC | 2 cut(s) | 35, 249 |
| SsiI | CCGC | 1 cut(s) | 343 |
| SspMI | CTAG | 1 cut(s) | 294 |
| StyD4I | CCNGG | 1 cut(s) | 72 |
| TaaI | ACNGT | 1 cut(s) | 27 |
| TaqI | TCGA | 1 cut(s) | 144 |
| TaqII | GACCGA | 1 cut(s) | 266 |
| TauI | GCSGC | 1 cut(s) | 345 |
| TfiI | GAWTC | 1 cut(s) | 290 |
| TscAI | CASTG | 1 cut(s) | 379 |
| TseI | GCWGC | 1 cut(s) | 197 |
| TspDTI | ATGAA | 1 cut(s) | 228 |
| TspGWI | ACGGA | 1 cut(s) | 172 |
| TspRI | CASTG | 1 cut(s) | 379 |
| VpaK11BI | GGWCC | 2 cut(s) | 35, 249 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 112 |
| XceI | RCATGY | 2 cut(s) | 305, 356 |
| XspI | CTAG | 1 cut(s) | 294 |