Rmu_sc0004658.1_g000005

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004658.1
OG0000169
Physical Location & Seq
Forward (+)
16873 .. 17859
987 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004658.1_g000005.1.cds

Sequence Viewer

Length: 987 bp
atgatggagtcaagtctctgcatgaaattcagtttaaacatctgcaaatctggattagggtttctggcatatatacctcctctgtatgaagaacctgagaatctcaccttgatcggcaaccttttgggcggttttttggagtatgacaagaaggaatttaagaagggggtgattagggttttattcatcgacatatctaaaccgatcctgctggaaagaaaagtcttcctagatactggggttgaacccatgttgcagtttcagttcaagcatctgcaggggagatgcacccaatgtggtttgatcacacatgctggactttcttgtgaggaacccactgcagtaaaccctacacctagggttttacactttcccggagcttccacctcagggaattcctttgctttcttttctaagcataagggcgactttctctctacttccccgatcgtcccaaggaagaagcaccctgtttttcttcgagtggagcgtccgacctcagagtcttcttctcccattgagccggctccaatagtagtcagtactggggtggcagatattgctgtgacgcacggtttggagagtaacaaaagtctaggtgaggttcctgaactggctgtttctggagacattactccaggtacgcagaagcaacagactgttttgccatccaaaaagcgggagcgtggtggtgcttgccagcctagtcccaagaaatttaaaacaatcttgggtggtaagattccaacactgcatgctgaggtacttggactcattgaggaggatggcgacctcactttggtcacgctgaaaaagaagtctggtaggcctctgggaagcatgaataagactcaacgtgcaaacaagaagctcgatggtactcccctgaagattacttatcctactagcattgtatctggtcctagccctagggacaaagggcaaaggaaagatttaatctttccagcttcctttgcctttcactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 Exo_endo_phos_2 RNase_H RVT_1 zf-CCHC_4

Protein Analysis

328

Amino Acids

35.75

Weight (kDa)

9.39

Isoelectric Point (pI)

41.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000169)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13681 FvH4_3g25832 FvH4_3g26062 FvH4_4g08041 FvH4_4g13361 FvH4_4g16721 FvH4_4g21881 FvH4_6g07632 FvH4_6g17062 FvH4_6g26370 FvH4_7g07641
rosa_chinensis RchiOBHm_Chr1g0320861 RchiOBHm_Chr2g0109251 RchiOBHm_Chr3g0472781 RchiOBHm_Chr6g0288921 RchiOBHm_Chr7g0191711 RchiOBHm_Chr7g0238801
rosa_laevigata RLG00000007550 RLG00000036731
rosa_multiflora Rmu_co8018808.1_g000001 Rmu_co8401665.1_g000001 Rmu_co8461051.1_g000001 Rmu_sc0000144.1_g000042 Rmu_sc0000144.1_g000051 Rmu_sc0000160.1_g000018 Rmu_sc0000245.1_g000011 Rmu_sc0000299.1_g000021 Rmu_sc0000348.1_g000003 Rmu_sc0000367.1_g000120 Rmu_sc0000424.1_g000037 Rmu_sc0000427.1_g000006 Rmu_sc0000427.1_g000023 Rmu_sc0000427.1_g000037 Rmu_sc0000604.1_g000005 Rmu_sc0000605.1_g000060 Rmu_sc0000621.1_g000030 Rmu_sc0000693.1_g000017 Rmu_sc0000708.1_g000012 Rmu_sc0000918.1_g000031 Rmu_sc0000953.1_g000027 Rmu_sc0001030.1_g000008 Rmu_sc0001030.1_g000011 Rmu_sc0001051.1_g000026 Rmu_sc0001055.1_g000001 Rmu_sc0001081.1_g000001 Rmu_sc0001175.1_g000002 Rmu_sc0001176.1_g000026 Rmu_sc0001181.1_g000010 Rmu_sc0001225.1_g000003 Rmu_sc0001371.1_g000008 Rmu_sc0001433.1_g000012 Rmu_sc0001507.1_g000009 Rmu_sc0001643.1_g000014 Rmu_sc0001879.1_g000002 Rmu_sc0001890.1_g000006 Rmu_sc0002129.1_g000039 Rmu_sc0002356.1_g000008 Rmu_sc0002358.1_g000003 Rmu_sc0002553.1_g000024 Rmu_sc0002826.1_g000007 Rmu_sc0002872.1_g000007 Rmu_sc0003323.1_g000026 Rmu_sc0003410.1_g000001 Rmu_sc0003511.1_g000042 Rmu_sc0003541.1_g000036 Rmu_sc0003605.1_g000048 Rmu_sc0003689.1_g000014 Rmu_sc0003692.1_g000010 Rmu_sc0003720.1_g000001 Rmu_sc0003813.1_g000003 Rmu_sc0003872.1_g000005 Rmu_sc0004010.1_g000012 Rmu_sc0004165.1_g000092 Rmu_sc0004230.1_g000013 Rmu_sc0004318.1_g000020 Rmu_sc0004353.1_g000004 Rmu_sc0004617.1_g000005 Rmu_sc0004617.1_g000006 Rmu_sc0004658.1_g000005 Rmu_sc0005356.1_g000008 Rmu_sc0005994.1_g000014 Rmu_sc0006388.1_g000004 Rmu_sc0006674.1_g000020 Rmu_sc0006898.1_g000008 Rmu_sc0007286.1_g000005 Rmu_sc0007476.1_g000002 Rmu_sc0007671.1_g000005 Rmu_sc0007991.1_g000008 Rmu_sc0008131.1_g000008 Rmu_sc0008163.1_g000011 Rmu_sc0008322.1_g000004 Rmu_sc0008334.1_g000017 Rmu_sc0008835.1_g000009 Rmu_sc0008835.1_g000011 Rmu_sc0009954.1_g000006 Rmu_sc0010050.1_g000001 Rmu_sc0010317.1_g000011 Rmu_sc0010426.1_g000002 Rmu_sc0011111.1_g000005 Rmu_sc0014614.1_g000003 Rmu_sc0014688.1_g000002 Rmu_sc0015167.1_g000003 Rmu_sc0015936.1_g000003 Rmu_sc0017323.1_g000003 Rmu_sc0018541.1_g000001 Rmu_sc0019370.1_g000003 Rmu_sc0020444.1_g000001 Rmu_sc0020600.1_g000003 Rmu_sc0021238.1_g000001 Rmu_sc0022909.1_g000001 Rmu_sc0030397.1_g000001 Rmu_sc0030484.1_g000002 Rmu_sc0035139.1_g000001 Rmu_sc0035719.1_g000001 Rmu_ssc0000287.1_g000010 Rmu_ssc0000451.1_g000005
rosa_roxburghii Rroxscaffold_1G00046590 Rroxscaffold_1G00050100 Rroxscaffold_2G00079390 Rroxscaffold_2G00088790 Rroxscaffold_2G00097170 Rroxscaffold_2G00126350 Rroxscaffold_3G00221550 Rroxscaffold_3G00222700 Rroxscaffold_3G00236390 Rroxscaffold_3G00254000 Rroxscaffold_3G00260090 Rroxscaffold_3G00263600 Rroxscaffold_5G00336900
rosa_rugosa Rorug01G0048200 Rorug01G0172000 Rorug01G0294000 Rorug01G0308200 Rorug01G0355300 Rorug02G0000900 Rorug02G0129600 Rorug02G0136800 Rorug02G0179700 Rorug02G0251500 Rorug02G0305800 Rorug02G0305900 Rorug02G0373800 Rorug02G0396100 Rorug02G0411300 Rorug02G0411400 Rorug02G0411500 Rorug02G0460200 Rorug03G0187400 Rorug03G0299000 Rorug04G0041700 Rorug04G0130800 Rorug04G0168300 Rorug04G0198700 Rorug05G0095100 Rorug05G0194100 Rorug05G0205300 Rorug05G0235300 Rorug06G0088100.1 Rorug06G0120100 Rorug06G0164300 Rorug07G0163600 Rorug07G0163700 Rorug07G0236200 Rorug07G0307200 RorugPtG0006100
rosa_samantha Rh1DG036900 Rh3BG176200 Rh4CG455100 Rh6AG142400 Rh6AG263000 Rh6CG138900 Rh6DG126200 Rh7CG393300 Rh7CG447500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 502
AciI CCGC 2 cut(s) 129, 679
AclWI GGATC 1 cut(s) 199
AcsI RAATTY 4 cut(s) 26, 155, 394, 716
AcuI CTGAAG 1 cut(s) 908
AfaI GTAC 4 cut(s) 544, 643, 765, 880
AfiI CCNNNNNNNGG 3 cut(s) 390, 678, 799
AgsI TTSAA 2 cut(s) 245, 268
AjnI CCWGG 1 cut(s) 637
AluBI AGCT 3 cut(s) 380, 871, 968
AluI AGCT 3 cut(s) 380, 871, 968
Alw26I GTCTC 2 cut(s) 20, 621
AlwI GGATC 1 cut(s) 199
AoxI GGCC 1 cut(s) 827
ApoI RAATTY 4 cut(s) 26, 155, 394, 716
ArsI GACNNNNNNTTYG 2 cut(s) 559, 591
AspA2I CCTAGG 2 cut(s) 356, 929
AspS9I GGNCC 1 cut(s) 920
AsuC2I CCSGG 1 cut(s) 375
AsuHPI GGTGA 3 cut(s) 97, 181, 611
AvaII GGWCC 1 cut(s) 920
AvrII CCTAGG 2 cut(s) 356, 929
AxyI CCTNAGG 1 cut(s) 388
BaeI ACNNNNGTAYC 2 cut(s) 225, 258
BbsI GAAGAC 2 cut(s) 217, 498
BbvCI CCTCAGC 1 cut(s) 759
BccI CCATC 3 cut(s) 676, 779, 869
BciT130I CCWGG 1 cut(s) 639
BclI TGATCA 1 cut(s) 303
BcnI CCSGG 1 cut(s) 375
BcoDI GTCTC 2 cut(s) 20, 621
BfaI CTAG 8 cut(s) 230, 357, 596, 705, 906, 924, 930, 985
BfmI CTRYAG 2 cut(s) 275, 339
BlnI CCTAGG 2 cut(s) 356, 929
BmcAI AGTACT 1 cut(s) 544
Bme1390I CCNGG 2 cut(s) 375, 639
Bme18I GGWCC 1 cut(s) 920
BmgT120I GGNCC 1 cut(s) 920
BmiI GGNNCC 3 cut(s) 333, 528, 606
BmrFI CCNGG 2 cut(s) 375, 639
BmrI ACTGGG 2 cut(s) 246, 555
BmsI GCATC 2 cut(s) 275, 280
BmuI ACTGGG 2 cut(s) 246, 555
BpiI GAAGAC 2 cut(s) 217, 498
BpmI CTGGAG 2 cut(s) 621, 645
Bpu10I CCTNAGC 1 cut(s) 759
BpuMI CCSGG 1 cut(s) 375
BsaJI CCNNGG 3 cut(s) 356, 455, 929
Bsc4I CCNNNNNNNGG 3 cut(s) 390, 678, 799
Bse118I RCCGGY 1 cut(s) 523
Bse1I ACTGG 3 cut(s) 241, 550, 618
Bse21I CCTNAGG 1 cut(s) 388
BseBI CCWGG 1 cut(s) 639
BseDI CCNNGG 3 cut(s) 356, 455, 929
BseGI GGATG 2 cut(s) 668, 790
BseLI CCNNNNNNNGG 3 cut(s) 390, 678, 799
BseMII CTCAG 4 cut(s) 87, 402, 513, 750
BseNI ACTGG 3 cut(s) 241, 550, 618
BseRI GAGGAG 2 cut(s) 69, 794
Bsh1285I CGRYCG 1 cut(s) 450
BshFI GGCC 1 cut(s) 829
BsiEI CGRYCG 1 cut(s) 450
BsiSI CCGG 2 cut(s) 375, 524
BslFI GGGAC 3 cut(s) 437, 693, 947
BslI CCNNNNNNNGG 3 cut(s) 390, 678, 799
BsmAI GTCTC 2 cut(s) 20, 621
BsmFI GGGAC 3 cut(s) 437, 693, 947
BsnI GGCC 1 cut(s) 829
Bsp143I GATC 4 cut(s) 111, 204, 303, 447
BspACI CCGC 2 cut(s) 129, 679
BspANI GGCC 1 cut(s) 829
BspCNI CTCAG 4 cut(s) 88, 401, 512, 751
BspLI GGNNCC 3 cut(s) 333, 528, 606
BspMAI CTGCAG 2 cut(s) 279, 343
BspPI GGATC 1 cut(s) 199
BsrFI RCCGGY 1 cut(s) 523
BsrI ACTGG 3 cut(s) 241, 550, 618
BssAI RCCGGY 1 cut(s) 523
BssECI CCNNGG 3 cut(s) 356, 455, 929
BssMI GATC 4 cut(s) 111, 204, 303, 447
BssT1I CCWWGG 3 cut(s) 356, 455, 929
Bst2UI CCWGG 1 cut(s) 639
Bst4CI ACNGT 2 cut(s) 575, 661
BstAPI GCANNNNNTGC 1 cut(s) 560
BstC8I GCNNGC 4 cut(s) 525, 697, 701, 756
BstDEI CTNAG 5 cut(s) 96, 388, 414, 499, 759
BstF5I GGATG 2 cut(s) 668, 790
BstKTI GATC 4 cut(s) 114, 207, 306, 450
BstMAI GTCTC 2 cut(s) 20, 621
BstMBI GATC 4 cut(s) 111, 204, 303, 447
BstMCI CGRYCG 1 cut(s) 450
BstMWI GCNNNNNNNGC 2 cut(s) 560, 974
BstNI CCWGG 1 cut(s) 639
BstNSI RCATGY 2 cut(s) 314, 758
BstSCI CCNGG 2 cut(s) 373, 637
BstSFI CTRYAG 2 cut(s) 275, 339
BstV2I GAAGAC 2 cut(s) 217, 498
Bsu36I CCTNAGG 1 cut(s) 388
BsuRI GGCC 1 cut(s) 829
BtsCI GGATG 2 cut(s) 668, 790
BtsI GCAGTG 2 cut(s) 336, 749
BtsIMutI CAGTG 2 cut(s) 336, 749
Cac8I GCNNGC 4 cut(s) 525, 697, 701, 756
Cfr10I RCCGGY 1 cut(s) 523
Cfr13I GGNCC 1 cut(s) 920
CseI GACGC 2 cut(s) 479, 577
Csp6I GTAC 4 cut(s) 543, 642, 764, 879
CviAII CATG 5 cut(s) 22, 250, 311, 755, 841
CviJI RGCY 9 cut(s) 380, 523, 527, 617, 703, 829, 871, 927, 968
CviKI_1 RGCY 9 cut(s) 380, 523, 527, 617, 703, 829, 871, 927, 968
CviQI GTAC 4 cut(s) 543, 642, 764, 879
DdeI CTNAG 5 cut(s) 96, 388, 414, 499, 759
DpnI GATC 4 cut(s) 113, 206, 305, 449
DpnII GATC 4 cut(s) 111, 204, 303, 447
DraI TTTAAA 2 cut(s) 36, 721
DrdI GACNNNNNNGTC 1 cut(s) 502
DseDI GACNNNNNNGTC 1 cut(s) 502
Eco130I CCWWGG 3 cut(s) 356, 455, 929
Eco147I AGGCCT 1 cut(s) 829
Eco47I GGWCC 1 cut(s) 920
Eco57I CTGAAG 1 cut(s) 908
Eco81I CCTNAGG 1 cut(s) 388
EcoRI GAATTC 1 cut(s) 394
EcoRII CCWGG 1 cut(s) 637
EcoT14I CCWWGG 3 cut(s) 356, 455, 929
ErhI CCWWGG 3 cut(s) 356, 455, 929
FaeI CATG 5 cut(s) 25, 253, 314, 758, 844
FalI AAGNNNNNCTT 2 cut(s) 413, 445
FaqI GGGAC 3 cut(s) 437, 693, 947
FatI CATG 5 cut(s) 21, 249, 310, 754, 840
FauI CCCGC 1 cut(s) 672
FbaI TGATCA 1 cut(s) 303
FokI GGATG 2 cut(s) 655, 797
FspBI CTAG 8 cut(s) 230, 357, 596, 705, 906, 924, 930, 985
GsuI CTGGAG 2 cut(s) 621, 645
HaeIII GGCC 1 cut(s) 829
HapII CCGG 2 cut(s) 375, 524
HgaI GACGC 2 cut(s) 479, 577
Hin1II CATG 5 cut(s) 25, 253, 314, 758, 844
HinfI GANTC 6 cut(s) 8, 100, 503, 742, 771, 850
HpaII CCGG 2 cut(s) 375, 524
HphI GGTGA 3 cut(s) 97, 181, 611
Hpy166II GTNNAC 1 cut(s) 346
Hpy188I TCNGA 2 cut(s) 495, 502
Hpy188III TCNNGA 3 cut(s) 51, 608, 624
Hpy8I GTNNAC 1 cut(s) 346
HpyAV CCTTC 2 cut(s) 145, 157
HpyCH4III ACNGT 2 cut(s) 575, 661
HpyCH4IV ACGT 1 cut(s) 856
HpyCH4V TGCA 8 cut(s) 21, 45, 256, 277, 288, 341, 754, 860
HpyF10VI GCNNNNNNNGC 2 cut(s) 560, 974
HpyF3I CTNAG 5 cut(s) 96, 388, 414, 499, 759
HpySE526I ACGT 1 cut(s) 856
Hsp92II CATG 5 cut(s) 25, 253, 314, 758, 844
KroI GCCGGC 1 cut(s) 523
KroNI GCCGGC 1 cut(s) 525
Ksp22I TGATCA 1 cut(s) 303
Kzo9I GATC 4 cut(s) 111, 204, 303, 447
LmnI GCTCC 4 cut(s) 377, 487, 532, 682
LweI GCATC 2 cut(s) 275, 280
MaeI CTAG 8 cut(s) 230, 357, 596, 705, 906, 924, 930, 985
MaeII ACGT 1 cut(s) 856
MaeIII GTNAC 3 cut(s) 565, 584, 802
MalI GATC 4 cut(s) 113, 206, 305, 449
MboI GATC 4 cut(s) 111, 204, 303, 447
MboII GAAGA 7 cut(s) 101, 217, 470, 472, 498, 501, 901
MluCI AATT 4 cut(s) 26, 155, 394, 716
MlyI GAGTC 4 cut(s) 17, 512, 765, 844
MmeI TCCRAC 2 cut(s) 518, 770
MroNI GCCGGC 1 cut(s) 523
MseI TTAA 4 cut(s) 35, 159, 720, 956
MspI CCGG 2 cut(s) 375, 524
MspR9I CCNGG 2 cut(s) 375, 639
MssI GTTTAAAC 1 cut(s) 36
MvaI CCWGG 1 cut(s) 639
MwoI GCNNNNNNNGC 2 cut(s) 560, 974
NaeI GCCGGC 1 cut(s) 525
NciI CCSGG 1 cut(s) 375
NdeII GATC 4 cut(s) 111, 204, 303, 447
NgoMIV GCCGGC 1 cut(s) 523
NlaIII CATG 5 cut(s) 25, 253, 314, 758, 844
NlaIV GGNNCC 3 cut(s) 333, 528, 606
NmuCI GTSAC 2 cut(s) 565, 802
NspI RCATGY 2 cut(s) 314, 758
PaeI GCATGC 1 cut(s) 758
PceI AGGCCT 1 cut(s) 829
PcsI WCGNNNNNNNCGW 1 cut(s) 487
PdiI GCCGGC 1 cut(s) 525
PfeI GAWTC 2 cut(s) 100, 742
PfoI TCCNGGA 1 cut(s) 373
Ple19I CGATCG 1 cut(s) 450
PleI GAGTC 4 cut(s) 16, 511, 765, 844
PmeI GTTTAAAC 1 cut(s) 36
PpsI GAGTC 4 cut(s) 16, 511, 765, 844
Psp6I CCWGG 1 cut(s) 637
PspGI CCWGG 1 cut(s) 637
PspN4I GGNNCC 3 cut(s) 333, 528, 606
PspPI GGNCC 1 cut(s) 920
PstI CTGCAG 2 cut(s) 279, 343
PvuI CGATCG 1 cut(s) 450
RsaI GTAC 4 cut(s) 544, 643, 765, 880
RsaNI GTAC 4 cut(s) 543, 642, 764, 879
SaqAI TTAA 4 cut(s) 35, 159, 720, 956
Sau3AI GATC 4 cut(s) 111, 204, 303, 447
Sau96I GGNCC 1 cut(s) 920
ScaI AGTACT 1 cut(s) 544
SchI GAGTC 4 cut(s) 17, 512, 765, 844
ScrFI CCNGG 2 cut(s) 375, 639
SfaNI GCATC 2 cut(s) 275, 280
SfcI CTRYAG 2 cut(s) 275, 339
SinI GGWCC 1 cut(s) 920
SphI GCATGC 1 cut(s) 758
Sse9I AATT 4 cut(s) 26, 155, 394, 716
SseBI AGGCCT 1 cut(s) 829
SsiI CCGC 2 cut(s) 129, 679
SspMI CTAG 8 cut(s) 230, 357, 596, 705, 906, 924, 930, 985
StuI AGGCCT 1 cut(s) 829
StyD4I CCNGG 2 cut(s) 373, 637
StyI CCWWGG 3 cut(s) 356, 455, 929
TaaI ACNGT 2 cut(s) 575, 661
TaiI ACGT 1 cut(s) 859
TaqI TCGA 3 cut(s) 189, 481, 873
TasI AATT 4 cut(s) 26, 155, 394, 716
TatI WGTACW 1 cut(s) 542
TfiI GAWTC 2 cut(s) 100, 742
Tru1I TTAA 4 cut(s) 35, 159, 720, 956
Tru9I TTAA 4 cut(s) 35, 159, 720, 956
TscAI CASTG 2 cut(s) 343, 756
TseFI GTSAC 2 cut(s) 565, 802
Tsp45I GTSAC 2 cut(s) 565, 802
TspDTI ATGAA 4 cut(s) 38, 102, 175, 857
TspRI CASTG 2 cut(s) 343, 756
VpaK11BI GGWCC 1 cut(s) 920
XapI RAATTY 4 cut(s) 26, 155, 394, 716
XceI RCATGY 2 cut(s) 314, 758
XmaJI CCTAGG 2 cut(s) 356, 929
XspI CTAG 8 cut(s) 230, 357, 596, 705, 906, 924, 930, 985
ZrmI AGTACT 1 cut(s) 544
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.