Rorug07G0307200

No description available

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
Physical Location & Seq
Forward (+)
30878067 .. 30879169
1103 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0307200.1

Sequence Viewer

Length: 546 bp
ATGGAGGGCAGTTTTGCTGATGAGCTTTACTCAGAAAGTTTACAGCTATCAAAATCGCAATTGGGTTCCACATCGAATGTCACCAGTAAACAAAGTGGTTTAGATGATCATGTTAAGATGGGATACCGTGATGGTGTTATAGCCGGAAAGGAAGCTTCTTCTCAGGAGGGATTCAATATTGGCTTTAAGCAATCAGTCCTTGTTGGTTACAACTGGGGTCTTGTGAGAGGTGTTACAAGTACATTGGCTTCCCTTCCAGATGGTATAAGGGAGAAGTTGATTGAAACAGAAGAACAAAGAACTCGATTTCAGGGATTGTATGAATCTGTTCATTCCCTTTCTACAACAGATGCCCTTGGGTTGTTTAACGATGAAATCACAAGTAAAAATGATAGAGAACAAGTTGAAAGTTCAGAGACTAGTTCTTTTGAAGTTGAAACTGGTCTGGAAGAGCAAAGATTAGACCTCAGTGGTCTAGGAAATTACTCTGCAAAGCTCCGTTCACTTCTTTTGGAGTCACCTGGAATCAAAGTCAAGTTCCCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

181

Amino Acids

19.82

Weight (kDa)

4.73

Isoelectric Point (pI)

43.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Yae1_N PF09811 41 - 78 4.4e-10 Essential protein Yae1, N terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000169)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13681 FvH4_3g25832 FvH4_3g26062 FvH4_4g08041 FvH4_4g13361 FvH4_4g16721 FvH4_4g21881 FvH4_6g07632 FvH4_6g17062 FvH4_6g26370 FvH4_7g07641
rosa_chinensis RchiOBHm_Chr1g0320861 RchiOBHm_Chr2g0109251 RchiOBHm_Chr3g0472781 RchiOBHm_Chr6g0288921 RchiOBHm_Chr7g0191711 RchiOBHm_Chr7g0238801
rosa_laevigata RLG00000007550 RLG00000036731
rosa_multiflora Rmu_co8018808.1_g000001 Rmu_co8401665.1_g000001 Rmu_co8461051.1_g000001 Rmu_sc0000144.1_g000042 Rmu_sc0000144.1_g000051 Rmu_sc0000160.1_g000018 Rmu_sc0000245.1_g000011 Rmu_sc0000299.1_g000021 Rmu_sc0000348.1_g000003 Rmu_sc0000367.1_g000120 Rmu_sc0000424.1_g000037 Rmu_sc0000427.1_g000006 Rmu_sc0000427.1_g000023 Rmu_sc0000427.1_g000037 Rmu_sc0000604.1_g000005 Rmu_sc0000605.1_g000060 Rmu_sc0000621.1_g000030 Rmu_sc0000693.1_g000017 Rmu_sc0000708.1_g000012 Rmu_sc0000918.1_g000031 Rmu_sc0000953.1_g000027 Rmu_sc0001030.1_g000008 Rmu_sc0001030.1_g000011 Rmu_sc0001051.1_g000026 Rmu_sc0001055.1_g000001 Rmu_sc0001081.1_g000001 Rmu_sc0001175.1_g000002 Rmu_sc0001176.1_g000026 Rmu_sc0001181.1_g000010 Rmu_sc0001225.1_g000003 Rmu_sc0001371.1_g000008 Rmu_sc0001433.1_g000012 Rmu_sc0001507.1_g000009 Rmu_sc0001643.1_g000014 Rmu_sc0001879.1_g000002 Rmu_sc0001890.1_g000006 Rmu_sc0002129.1_g000039 Rmu_sc0002356.1_g000008 Rmu_sc0002358.1_g000003 Rmu_sc0002553.1_g000024 Rmu_sc0002826.1_g000007 Rmu_sc0002872.1_g000007 Rmu_sc0003323.1_g000026 Rmu_sc0003410.1_g000001 Rmu_sc0003511.1_g000042 Rmu_sc0003541.1_g000036 Rmu_sc0003605.1_g000048 Rmu_sc0003689.1_g000014 Rmu_sc0003692.1_g000010 Rmu_sc0003720.1_g000001 Rmu_sc0003813.1_g000003 Rmu_sc0003872.1_g000005 Rmu_sc0004010.1_g000012 Rmu_sc0004165.1_g000092 Rmu_sc0004230.1_g000013 Rmu_sc0004318.1_g000020 Rmu_sc0004353.1_g000004 Rmu_sc0004617.1_g000005 Rmu_sc0004617.1_g000006 Rmu_sc0004658.1_g000005 Rmu_sc0005356.1_g000008 Rmu_sc0005994.1_g000014 Rmu_sc0006388.1_g000004 Rmu_sc0006674.1_g000020 Rmu_sc0006898.1_g000008 Rmu_sc0007286.1_g000005 Rmu_sc0007476.1_g000002 Rmu_sc0007671.1_g000005 Rmu_sc0007991.1_g000008 Rmu_sc0008131.1_g000008 Rmu_sc0008163.1_g000011 Rmu_sc0008322.1_g000004 Rmu_sc0008334.1_g000017 Rmu_sc0008835.1_g000009 Rmu_sc0008835.1_g000011 Rmu_sc0009954.1_g000006 Rmu_sc0010050.1_g000001 Rmu_sc0010317.1_g000011 Rmu_sc0010426.1_g000002 Rmu_sc0011111.1_g000005 Rmu_sc0014614.1_g000003 Rmu_sc0014688.1_g000002 Rmu_sc0015167.1_g000003 Rmu_sc0015936.1_g000003 Rmu_sc0017323.1_g000003 Rmu_sc0018541.1_g000001 Rmu_sc0019370.1_g000003 Rmu_sc0020444.1_g000001 Rmu_sc0020600.1_g000003 Rmu_sc0021238.1_g000001 Rmu_sc0022909.1_g000001 Rmu_sc0030397.1_g000001 Rmu_sc0030484.1_g000002 Rmu_sc0035139.1_g000001 Rmu_sc0035719.1_g000001 Rmu_ssc0000287.1_g000010 Rmu_ssc0000451.1_g000005
rosa_roxburghii Rroxscaffold_1G00046590 Rroxscaffold_1G00050100 Rroxscaffold_2G00079390 Rroxscaffold_2G00088790 Rroxscaffold_2G00097170 Rroxscaffold_2G00126350 Rroxscaffold_3G00221550 Rroxscaffold_3G00222700 Rroxscaffold_3G00236390 Rroxscaffold_3G00254000 Rroxscaffold_3G00260090 Rroxscaffold_3G00263600 Rroxscaffold_5G00336900
rosa_rugosa Rorug01G0048200 Rorug01G0172000 Rorug01G0294000 Rorug01G0308200 Rorug01G0355300 Rorug02G0000900 Rorug02G0129600 Rorug02G0136800 Rorug02G0179700 Rorug02G0251500 Rorug02G0305800 Rorug02G0305900 Rorug02G0373800 Rorug02G0396100 Rorug02G0411300 Rorug02G0411400 Rorug02G0411500 Rorug02G0460200 Rorug03G0187400 Rorug03G0299000 Rorug04G0041700 Rorug04G0130800 Rorug04G0168300 Rorug04G0198700 Rorug05G0095100 Rorug05G0194100 Rorug05G0205300 Rorug05G0235300 Rorug06G0088100.1 Rorug06G0120100 Rorug06G0164300 Rorug07G0163600 Rorug07G0163700 Rorug07G0236200 Rorug07G0307200 RorugPtG0006100
rosa_samantha Rh1DG036900 Rh3BG176200 Rh4CG455100 Rh6AG142400 Rh6AG263000 Rh6CG138900 Rh6DG126200 Rh7CG393300 Rh7CG447500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 241
AgsI TTSAA 5 cut(s) 175, 284, 407, 431, 437
AhlI ACTAGT 1 cut(s) 419
AjnI CCWGG 1 cut(s) 520
AluBI AGCT 4 cut(s) 25, 46, 155, 496
AluI AGCT 4 cut(s) 25, 46, 155, 496
Alw26I GTCTC 1 cut(s) 410
Asp700I GAANNNNTTC 1 cut(s) 327
AsuHPI GGTGA 2 cut(s) 73, 510
BarI GAAGNNNNNNTAC 2 cut(s) 232, 264
BccI CCATC 3 cut(s) 112, 125, 254
BciT130I CCWGG 1 cut(s) 522
BciVI GTATCC 1 cut(s) 116
BclI TGATCA 1 cut(s) 106
BcoDI GTCTC 1 cut(s) 410
BcuI ACTAGT 1 cut(s) 419
BfaI CTAG 3 cut(s) 420, 476, 544
BfuI GTATCC 1 cut(s) 116
Bme1390I CCNGG 1 cut(s) 522
BmiI GGNNCC 1 cut(s) 67
BmrFI CCNGG 1 cut(s) 522
BmrI ACTGGG 1 cut(s) 223
BmsI GCATC 1 cut(s) 340
BmuI ACTGGG 1 cut(s) 223
BplI GAGNNNNNCTC 2 cut(s) 14, 46
BsaJI CCNNGG 1 cut(s) 355
Bse1I ACTGG 3 cut(s) 84, 218, 445
BseBI CCWGG 1 cut(s) 522
BseDI CCNNGG 1 cut(s) 355
BseMII CTCAG 3 cut(s) 45, 176, 481
BseNI ACTGG 3 cut(s) 84, 218, 445
BsiSI CCGG 1 cut(s) 144
BsmAI GTCTC 1 cut(s) 410
Bsp143I GATC 1 cut(s) 106
BspCNI CTCAG 3 cut(s) 44, 175, 480
BspLI GGNNCC 1 cut(s) 67
BspQI GCTCTTC 1 cut(s) 444
BsrI ACTGG 3 cut(s) 84, 218, 445
BssECI CCNNGG 1 cut(s) 355
BssMI GATC 1 cut(s) 106
BssT1I CCWWGG 1 cut(s) 355
Bst2UI CCWGG 1 cut(s) 522
Bst4CI ACNGT 1 cut(s) 128
Bst6I CTCTTC 1 cut(s) 444
BstDEI CTNAG 3 cut(s) 31, 162, 467
BstKTI GATC 1 cut(s) 109
BstMAI GTCTC 1 cut(s) 410
BstMBI GATC 1 cut(s) 106
BstNI CCWGG 1 cut(s) 522
BstSCI CCNGG 1 cut(s) 520
BsuI GTATCC 1 cut(s) 116
BtsIMutI CAGTG 1 cut(s) 475
Csp6I GTAC 1 cut(s) 240
CviAII CATG 1 cut(s) 110
CviJI RGCY 7 cut(s) 25, 46, 143, 155, 183, 248, 496
CviKI_1 RGCY 7 cut(s) 25, 46, 143, 155, 183, 248, 496
CviQI GTAC 1 cut(s) 240
DdeI CTNAG 3 cut(s) 31, 162, 467
DpnI GATC 1 cut(s) 108
DpnII GATC 1 cut(s) 106
Eam1104I CTCTTC 1 cut(s) 444
EarI CTCTTC 1 cut(s) 444
Eco130I CCWWGG 1 cut(s) 355
EcoRII CCWGG 1 cut(s) 520
EcoT14I CCWWGG 1 cut(s) 355
ErhI CCWWGG 1 cut(s) 355
FaeI CATG 1 cut(s) 113
FaiI YATR 4 cut(s) 111, 140, 266, 321
FatI CATG 1 cut(s) 109
FbaI TGATCA 1 cut(s) 106
FspBI CTAG 3 cut(s) 420, 476, 544
HapII CCGG 1 cut(s) 144
Hin1II CATG 1 cut(s) 113
HindIII AAGCTT 1 cut(s) 153
HinfI GANTC 4 cut(s) 171, 323, 515, 525
HpaII CCGG 1 cut(s) 144
HphI GGTGA 2 cut(s) 73, 510
Hpy166II GTNNAC 3 cut(s) 41, 89, 503
Hpy188I TCNGA 2 cut(s) 34, 415
Hpy188III TCNNGA 3 cut(s) 164, 257, 446
Hpy8I GTNNAC 3 cut(s) 41, 89, 503
HpyAV CCTTC 1 cut(s) 263
HpyCH4III ACNGT 1 cut(s) 128
HpyCH4V TGCA 1 cut(s) 491
HpyF3I CTNAG 3 cut(s) 31, 162, 467
Hsp92II CATG 1 cut(s) 113
Ksp22I TGATCA 1 cut(s) 106
Kzo9I GATC 1 cut(s) 106
LguI GCTCTTC 1 cut(s) 444
LmnI GCTCC 1 cut(s) 501
LweI GCATC 1 cut(s) 340
MaeI CTAG 3 cut(s) 420, 476, 544
MaeIII GTNAC 4 cut(s) 79, 206, 232, 516
MalI GATC 1 cut(s) 108
MboI GATC 1 cut(s) 106
MboII GAAGA 3 cut(s) 150, 302, 461
MfeI CAATTG 1 cut(s) 59
MluCI AATT 2 cut(s) 59, 481
MlyI GAGTC 1 cut(s) 524
MnlI CCTC 3 cut(s) 160, 221, 476
MroXI GAANNNNTTC 1 cut(s) 327
MseI TTAA 3 cut(s) 114, 186, 366
MspI CCGG 1 cut(s) 144
MspR9I CCNGG 1 cut(s) 522
MunI CAATTG 1 cut(s) 59
MvaI CCWGG 1 cut(s) 522
NdeII GATC 1 cut(s) 106
NlaIII CATG 1 cut(s) 113
NlaIV GGNNCC 1 cut(s) 67
NmuCI GTSAC 2 cut(s) 79, 516
PciSI GCTCTTC 1 cut(s) 444
PdmI GAANNNNTTC 1 cut(s) 327
PfeI GAWTC 3 cut(s) 171, 323, 525
PleI GAGTC 1 cut(s) 523
PpsI GAGTC 1 cut(s) 523
Psp6I CCWGG 1 cut(s) 520
PspGI CCWGG 1 cut(s) 520
PspN4I GGNNCC 1 cut(s) 67
RsaI GTAC 1 cut(s) 241
RsaNI GTAC 1 cut(s) 240
SapI GCTCTTC 1 cut(s) 444
SaqAI TTAA 3 cut(s) 114, 186, 366
Sau3AI GATC 1 cut(s) 106
SchI GAGTC 1 cut(s) 524
ScrFI CCNGG 1 cut(s) 522
SetI ASST 7 cut(s) 27, 48, 157, 232, 468, 498, 523
SfaNI GCATC 1 cut(s) 340
SpeI ACTAGT 1 cut(s) 419
Sse9I AATT 2 cut(s) 59, 481
SspI AATATT 1 cut(s) 178
SspMI CTAG 3 cut(s) 420, 476, 544
StyD4I CCNGG 1 cut(s) 520
StyI CCWWGG 1 cut(s) 355
TaaI ACNGT 1 cut(s) 128
TaqI TCGA 2 cut(s) 74, 304
TasI AATT 2 cut(s) 59, 481
TatI WGTACW 1 cut(s) 239
TfiI GAWTC 3 cut(s) 171, 323, 525
Tru1I TTAA 3 cut(s) 114, 186, 366
Tru9I TTAA 3 cut(s) 114, 186, 366
TscAI CASTG 1 cut(s) 475
TseFI GTSAC 2 cut(s) 79, 516
Tsp45I GTSAC 2 cut(s) 79, 516
TspDTI ATGAA 3 cut(s) 320, 336, 387
TspGWI ACGGA 1 cut(s) 488
TspRI CASTG 1 cut(s) 475
XmnI GAANNNNTTC 1 cut(s) 327
XspI CTAG 3 cut(s) 420, 476, 544
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.