Rmu_sc0008322.1_g000004

negative regulation of oxidative stress-induced neuron death

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008322.1
OG0000169
Physical Location & Seq
Forward (+)
34734 .. 35120
387 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008322.1_g000004.1.cds

Sequence Viewer

Length: 387 bp
atgacttccatcgacgccgtcaccgctagctttgcggcctccttggctcttgctgagggtggtcaagcccctgaccttggaaaaattggtggaggtctggtgaagaaatcctcccaatcttttcttcttgggaaacctcttacttacaaacctgtggattctgccaccttcaaatctcatttccttcgtacttggatggtggaaaaggaatttagggttcaggaaaagaatgaaaatctattcctattctctttcggatcagcccgagaccgaaataaggttctcaaaggtggagtttggtgctttgaacgtgctccagtctgcctggaggagtacgacggagtttttcccattgctaaagtttccataaaacatgttcaaatctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TLD

Protein Analysis

128

Amino Acids

14.09

Weight (kDa)

9.17

Isoelectric Point (pI)

30.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000169)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13681 FvH4_3g25832 FvH4_3g26062 FvH4_4g08041 FvH4_4g13361 FvH4_4g16721 FvH4_4g21881 FvH4_6g07632 FvH4_6g17062 FvH4_6g26370 FvH4_7g07641
rosa_chinensis RchiOBHm_Chr1g0320861 RchiOBHm_Chr2g0109251 RchiOBHm_Chr3g0472781 RchiOBHm_Chr6g0288921 RchiOBHm_Chr7g0191711 RchiOBHm_Chr7g0238801
rosa_laevigata RLG00000007550 RLG00000036731
rosa_multiflora Rmu_co8018808.1_g000001 Rmu_co8401665.1_g000001 Rmu_co8461051.1_g000001 Rmu_sc0000144.1_g000042 Rmu_sc0000144.1_g000051 Rmu_sc0000160.1_g000018 Rmu_sc0000245.1_g000011 Rmu_sc0000299.1_g000021 Rmu_sc0000348.1_g000003 Rmu_sc0000367.1_g000120 Rmu_sc0000424.1_g000037 Rmu_sc0000427.1_g000006 Rmu_sc0000427.1_g000023 Rmu_sc0000427.1_g000037 Rmu_sc0000604.1_g000005 Rmu_sc0000605.1_g000060 Rmu_sc0000621.1_g000030 Rmu_sc0000693.1_g000017 Rmu_sc0000708.1_g000012 Rmu_sc0000918.1_g000031 Rmu_sc0000953.1_g000027 Rmu_sc0001030.1_g000008 Rmu_sc0001030.1_g000011 Rmu_sc0001051.1_g000026 Rmu_sc0001055.1_g000001 Rmu_sc0001081.1_g000001 Rmu_sc0001175.1_g000002 Rmu_sc0001176.1_g000026 Rmu_sc0001181.1_g000010 Rmu_sc0001225.1_g000003 Rmu_sc0001371.1_g000008 Rmu_sc0001433.1_g000012 Rmu_sc0001507.1_g000009 Rmu_sc0001643.1_g000014 Rmu_sc0001879.1_g000002 Rmu_sc0001890.1_g000006 Rmu_sc0002129.1_g000039 Rmu_sc0002356.1_g000008 Rmu_sc0002358.1_g000003 Rmu_sc0002553.1_g000024 Rmu_sc0002826.1_g000007 Rmu_sc0002872.1_g000007 Rmu_sc0003323.1_g000026 Rmu_sc0003410.1_g000001 Rmu_sc0003511.1_g000042 Rmu_sc0003541.1_g000036 Rmu_sc0003605.1_g000048 Rmu_sc0003689.1_g000014 Rmu_sc0003692.1_g000010 Rmu_sc0003720.1_g000001 Rmu_sc0003813.1_g000003 Rmu_sc0003872.1_g000005 Rmu_sc0004010.1_g000012 Rmu_sc0004165.1_g000092 Rmu_sc0004230.1_g000013 Rmu_sc0004318.1_g000020 Rmu_sc0004353.1_g000004 Rmu_sc0004617.1_g000005 Rmu_sc0004617.1_g000006 Rmu_sc0004658.1_g000005 Rmu_sc0005356.1_g000008 Rmu_sc0005994.1_g000014 Rmu_sc0006388.1_g000004 Rmu_sc0006674.1_g000020 Rmu_sc0006898.1_g000008 Rmu_sc0007286.1_g000005 Rmu_sc0007476.1_g000002 Rmu_sc0007671.1_g000005 Rmu_sc0007991.1_g000008 Rmu_sc0008131.1_g000008 Rmu_sc0008163.1_g000011 Rmu_sc0008322.1_g000004 Rmu_sc0008334.1_g000017 Rmu_sc0008835.1_g000009 Rmu_sc0008835.1_g000011 Rmu_sc0009954.1_g000006 Rmu_sc0010050.1_g000001 Rmu_sc0010317.1_g000011 Rmu_sc0010426.1_g000002 Rmu_sc0011111.1_g000005 Rmu_sc0014614.1_g000003 Rmu_sc0014688.1_g000002 Rmu_sc0015167.1_g000003 Rmu_sc0015936.1_g000003 Rmu_sc0017323.1_g000003 Rmu_sc0018541.1_g000001 Rmu_sc0019370.1_g000003 Rmu_sc0020444.1_g000001 Rmu_sc0020600.1_g000003 Rmu_sc0021238.1_g000001 Rmu_sc0022909.1_g000001 Rmu_sc0030397.1_g000001 Rmu_sc0030484.1_g000002 Rmu_sc0035139.1_g000001 Rmu_sc0035719.1_g000001 Rmu_ssc0000287.1_g000010 Rmu_ssc0000451.1_g000005
rosa_roxburghii Rroxscaffold_1G00046590 Rroxscaffold_1G00050100 Rroxscaffold_2G00079390 Rroxscaffold_2G00088790 Rroxscaffold_2G00097170 Rroxscaffold_2G00126350 Rroxscaffold_3G00221550 Rroxscaffold_3G00222700 Rroxscaffold_3G00236390 Rroxscaffold_3G00254000 Rroxscaffold_3G00260090 Rroxscaffold_3G00263600 Rroxscaffold_5G00336900
rosa_rugosa Rorug01G0048200 Rorug01G0172000 Rorug01G0294000 Rorug01G0308200 Rorug01G0355300 Rorug02G0000900 Rorug02G0129600 Rorug02G0136800 Rorug02G0179700 Rorug02G0251500 Rorug02G0305800 Rorug02G0305900 Rorug02G0373800 Rorug02G0396100 Rorug02G0411300 Rorug02G0411400 Rorug02G0411500 Rorug02G0460200 Rorug03G0187400 Rorug03G0299000 Rorug04G0041700 Rorug04G0130800 Rorug04G0168300 Rorug04G0198700 Rorug05G0095100 Rorug05G0194100 Rorug05G0205300 Rorug05G0235300 Rorug06G0088100.1 Rorug06G0120100 Rorug06G0164300 Rorug07G0163600 Rorug07G0163700 Rorug07G0236200 Rorug07G0307200 RorugPtG0006100
rosa_samantha Rh1DG036900 Rh3BG176200 Rh4CG455100 Rh6AG142400 Rh6AG263000 Rh6CG138900 Rh6DG126200 Rh7CG393300 Rh7CG447500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 24, 35
AclWI GGATC 1 cut(s) 265
AcsI RAATTY 1 cut(s) 209
AcyI GRCGYC 1 cut(s) 15
AfaI GTAC 2 cut(s) 190, 335
AfiI CCNNNNNNNGG 2 cut(s) 77, 277
AflIII ACRYGT 1 cut(s) 373
AgsI TTSAA 3 cut(s) 172, 308, 380
AjnI CCWGG 1 cut(s) 324
AjuI GAANNNNNNNTTGG 2 cut(s) 108, 140
AluBI AGCT 1 cut(s) 30
AluI AGCT 1 cut(s) 30
Alw21I GWGCWC 1 cut(s) 316
Alw26I GTCTC 1 cut(s) 261
AlwI GGATC 1 cut(s) 265
Ama87I CYCGRG 1 cut(s) 264
AoxI GGCC 1 cut(s) 36
ApoI RAATTY 1 cut(s) 209
AsuHPI GGTGA 2 cut(s) 13, 112
AsuNHI GCTAGC 1 cut(s) 26
AvaI CYCGRG 1 cut(s) 264
Bbv12I GWGCWC 1 cut(s) 316
BbvCI CCTCAGC 1 cut(s) 54
BccI CCATC 2 cut(s) 17, 190
BceAI ACGGC 1 cut(s) 2
BciT130I CCWGG 1 cut(s) 326
BcoDI GTCTC 1 cut(s) 261
BfaI CTAG 1 cut(s) 27
BglI GCCNNNNNGGC 1 cut(s) 44
BisI GCNGC 1 cut(s) 36
BlsI GCNGC 1 cut(s) 37
Bme1390I CCNGG 1 cut(s) 326
BmeT110I CYCGRG 1 cut(s) 264
BmrFI CCNGG 1 cut(s) 326
BmtI GCTAGC 1 cut(s) 30
BpmI CTGGAG 2 cut(s) 300, 347
Bpu10I CCTNAGC 1 cut(s) 54
BsaHI GRCGYC 1 cut(s) 15
BsaI GGTCTC 1 cut(s) 261
BsaJI CCNNGG 2 cut(s) 42, 76
BsaXI ACNNNNNCTCC 2 cut(s) 84, 114
Bsc4I CCNNNNNNNGG 2 cut(s) 77, 277
Bse1I ACTGG 1 cut(s) 317
Bse3DI GCAATG 1 cut(s) 351
BseBI CCWGG 1 cut(s) 326
BseDI CCNNGG 2 cut(s) 42, 76
BseGI GGATG 1 cut(s) 201
BseLI CCNNNNNNNGG 2 cut(s) 77, 277
BseMI GCAATG 1 cut(s) 351
BseMII CTCAG 1 cut(s) 45
BseNI ACTGG 1 cut(s) 317
BseRI GAGGAG 1 cut(s) 344
BshFI GGCC 1 cut(s) 38
BsiHKAI GWGCWC 1 cut(s) 316
BsiHKCI CYCGRG 1 cut(s) 264
BslI CCNNNNNNNGG 2 cut(s) 77, 277
BsmAI GTCTC 1 cut(s) 261
BsnI GGCC 1 cut(s) 38
Bso31I GGTCTC 1 cut(s) 261
BsoBI CYCGRG 1 cut(s) 264
Bsp1286I GDGCHC 1 cut(s) 316
Bsp143I GATC 1 cut(s) 257
BspACI CCGC 2 cut(s) 24, 35
BspANI GGCC 1 cut(s) 38
BspCNI CTCAG 1 cut(s) 46
BspOI GCTAGC 1 cut(s) 30
BspPI GGATC 1 cut(s) 265
BspTNI GGTCTC 1 cut(s) 261
BsrDI GCAATG 1 cut(s) 351
BsrI ACTGG 1 cut(s) 317
BssECI CCNNGG 2 cut(s) 42, 76
BssMI GATC 1 cut(s) 257
BssNI GRCGYC 1 cut(s) 15
BssT1I CCWWGG 2 cut(s) 42, 76
Bst2UI CCWGG 1 cut(s) 326
BstACI GRCGYC 1 cut(s) 15
BstC8I GCNNGC 1 cut(s) 28
BstDEI CTNAG 1 cut(s) 54
BstF5I GGATG 1 cut(s) 201
BstKTI GATC 1 cut(s) 260
BstMAI GTCTC 1 cut(s) 261
BstMBI GATC 1 cut(s) 257
BstMWI GCNNNNNNNGC 3 cut(s) 23, 32, 44
BstNI CCWGG 1 cut(s) 326
BstNSI RCATGY 1 cut(s) 377
BstSCI CCNGG 1 cut(s) 324
BsuRI GGCC 1 cut(s) 38
BtsCI GGATG 1 cut(s) 201
Cac8I GCNNGC 1 cut(s) 28
CseI GACGC 1 cut(s) 23
Csp6I GTAC 2 cut(s) 189, 334
CviAII CATG 1 cut(s) 374
CviJI RGCY 5 cut(s) 30, 38, 47, 68, 263
CviKI_1 RGCY 5 cut(s) 30, 38, 47, 68, 263
CviQI GTAC 2 cut(s) 189, 334
DdeI CTNAG 1 cut(s) 54
DpnI GATC 1 cut(s) 259
DpnII GATC 1 cut(s) 257
Eco130I CCWWGG 2 cut(s) 42, 76
Eco31I GGTCTC 1 cut(s) 261
Eco88I CYCGRG 1 cut(s) 264
EcoRII CCWGG 1 cut(s) 324
EcoT14I CCWWGG 2 cut(s) 42, 76
ErhI CCWWGG 2 cut(s) 42, 76
FaeI CATG 1 cut(s) 377
FaiI YATR 2 cut(s) 368, 375
FatI CATG 1 cut(s) 373
Fnu4HI GCNGC 1 cut(s) 36
FokI GGATG 1 cut(s) 208
Fsp4HI GCNGC 1 cut(s) 36
FspBI CTAG 1 cut(s) 27
GluI GCNGC 1 cut(s) 36
GsuI CTGGAG 2 cut(s) 300, 347
HaeIII GGCC 1 cut(s) 38
HgaI GACGC 1 cut(s) 23
Hin1I GRCGYC 1 cut(s) 15
Hin1II CATG 1 cut(s) 377
HinfI GANTC 1 cut(s) 158
HphI GGTGA 2 cut(s) 13, 112
Hpy188I TCNGA 2 cut(s) 257, 386
Hpy188III TCNNGA 1 cut(s) 221
Hpy99I CGWCG 2 cut(s) 17, 341
HpyAV CCTTC 2 cut(s) 178, 194
HpyCH4IV ACGT 1 cut(s) 310
HpyF10VI GCNNNNNNNGC 3 cut(s) 23, 32, 44
HpyF3I CTNAG 1 cut(s) 54
HpySE526I ACGT 1 cut(s) 310
Hsp92I GRCGYC 1 cut(s) 15
Hsp92II CATG 1 cut(s) 377
Kzo9I GATC 1 cut(s) 257
LmnI GCTCC 1 cut(s) 319
LpnPI CCDG 7 cut(s) 83, 84, 165, 206, 311, 330, 338
MaeI CTAG 1 cut(s) 27
MaeII ACGT 1 cut(s) 310
MaeIII GTNAC 1 cut(s) 19
MalI GATC 1 cut(s) 259
MboI GATC 1 cut(s) 257
MboII GAAGA 2 cut(s) 115, 116
MhlI GDGCHC 1 cut(s) 316
MluCI AATT 2 cut(s) 84, 209
MnlI CCTC 6 cut(s) 49, 49, 86, 121, 147, 322
MspR9I CCNGG 1 cut(s) 326
MvaI CCWGG 1 cut(s) 326
MwoI GCNNNNNNNGC 3 cut(s) 23, 32, 44
NdeII GATC 1 cut(s) 257
NheI GCTAGC 1 cut(s) 26
NlaIII CATG 1 cut(s) 377
NmuCI GTSAC 1 cut(s) 19
NspI RCATGY 1 cut(s) 377
PciI ACATGT 1 cut(s) 373
PfeI GAWTC 1 cut(s) 158
PflFI GACNNNGTC 1 cut(s) 17
PkrI GCNGC 1 cut(s) 37
PscI ACATGT 1 cut(s) 373
Psp6I CCWGG 1 cut(s) 324
PspGI CCWGG 1 cut(s) 324
PsyI GACNNNGTC 1 cut(s) 17
RsaI GTAC 2 cut(s) 190, 335
RsaNI GTAC 2 cut(s) 189, 334
SatI GCNGC 1 cut(s) 36
Sau3AI GATC 1 cut(s) 257
ScrFI CCNGG 1 cut(s) 326
SduI GDGCHC 1 cut(s) 316
SetI ASST 9 cut(s) 32, 78, 97, 139, 154, 170, 282, 292, 313
Sse9I AATT 2 cut(s) 84, 209
SsiI CCGC 2 cut(s) 24, 35
SspMI CTAG 1 cut(s) 27
StyD4I CCNGG 1 cut(s) 324
StyI CCWWGG 2 cut(s) 42, 76
TaiI ACGT 1 cut(s) 313
TaqI TCGA 1 cut(s) 12
TaqII GACCGA 1 cut(s) 285
TasI AATT 2 cut(s) 84, 209
TauI GCSGC 1 cut(s) 38
TfiI GAWTC 1 cut(s) 158
TseFI GTSAC 1 cut(s) 19
Tsp45I GTSAC 1 cut(s) 19
TspDTI ATGAA 1 cut(s) 246
TspGWI ACGGA 1 cut(s) 354
Tth111I GACNNNGTC 1 cut(s) 17
XapI RAATTY 1 cut(s) 209
XceI RCATGY 1 cut(s) 377
XspI CTAG 1 cut(s) 27
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.