Rmu_sc0001051.1_g000026

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001051.1
OG0000169
Physical Location & Seq
Forward (+)
90346 .. 91264
919 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001051.1_g000026.1.cds

Sequence Viewer

Length: 729 bp
atggcatccattgacgttgtcactgcttactttgctgcctcctttgccctcgctaatggaggtcaagccctagacctagcaaagattgccttcaagtctcacttcctccgaatatggatggtggaaagggattttagggagtacgacggggttctacctattgctgaggttccgatgaaacatgttatgtatgaagaacctgataactttattctcattgggaatctcttgggaggttttttggattatgataagaaacagtttcggaaaggaattattcgcatcttcttctcacataatatctcaaaacctattatacttgaacacaagattttcttagctacagggattgagactgtattgaagcttcaatttgaacatctcaagagtaggtgctctcaatgtggcattattactcattctggggccaagtgtgaggaacctaatgcggcaatctctacttctaaggttttgcactttggtggcccttcaacatctggaggatcattctctttcttggcccagaatattcgtgaattacttaagtcttcctctgctttgttgaagaaaaagaaacctgttattccaagattggagagattgccatcaggcttagacccatctggtgttaccatgcaagacatggataaggaggaggcaagagagcctactgcttgctgtgcatggtgtggaggctttggtctcttcatcaatggatggtgtttctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

242

Amino Acids

26.86

Weight (kDa)

8.43

Isoelectric Point (pI)

33.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000169)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13681 FvH4_3g25832 FvH4_3g26062 FvH4_4g08041 FvH4_4g13361 FvH4_4g16721 FvH4_4g21881 FvH4_6g07632 FvH4_6g17062 FvH4_6g26370 FvH4_7g07641
rosa_chinensis RchiOBHm_Chr1g0320861 RchiOBHm_Chr2g0109251 RchiOBHm_Chr3g0472781 RchiOBHm_Chr6g0288921 RchiOBHm_Chr7g0191711 RchiOBHm_Chr7g0238801
rosa_laevigata RLG00000007550 RLG00000036731
rosa_multiflora Rmu_co8018808.1_g000001 Rmu_co8401665.1_g000001 Rmu_co8461051.1_g000001 Rmu_sc0000144.1_g000042 Rmu_sc0000144.1_g000051 Rmu_sc0000160.1_g000018 Rmu_sc0000245.1_g000011 Rmu_sc0000299.1_g000021 Rmu_sc0000348.1_g000003 Rmu_sc0000367.1_g000120 Rmu_sc0000424.1_g000037 Rmu_sc0000427.1_g000006 Rmu_sc0000427.1_g000023 Rmu_sc0000427.1_g000037 Rmu_sc0000604.1_g000005 Rmu_sc0000605.1_g000060 Rmu_sc0000621.1_g000030 Rmu_sc0000693.1_g000017 Rmu_sc0000708.1_g000012 Rmu_sc0000918.1_g000031 Rmu_sc0000953.1_g000027 Rmu_sc0001030.1_g000008 Rmu_sc0001030.1_g000011 Rmu_sc0001051.1_g000026 Rmu_sc0001055.1_g000001 Rmu_sc0001081.1_g000001 Rmu_sc0001175.1_g000002 Rmu_sc0001176.1_g000026 Rmu_sc0001181.1_g000010 Rmu_sc0001225.1_g000003 Rmu_sc0001371.1_g000008 Rmu_sc0001433.1_g000012 Rmu_sc0001507.1_g000009 Rmu_sc0001643.1_g000014 Rmu_sc0001879.1_g000002 Rmu_sc0001890.1_g000006 Rmu_sc0002129.1_g000039 Rmu_sc0002356.1_g000008 Rmu_sc0002358.1_g000003 Rmu_sc0002553.1_g000024 Rmu_sc0002826.1_g000007 Rmu_sc0002872.1_g000007 Rmu_sc0003323.1_g000026 Rmu_sc0003410.1_g000001 Rmu_sc0003511.1_g000042 Rmu_sc0003541.1_g000036 Rmu_sc0003605.1_g000048 Rmu_sc0003689.1_g000014 Rmu_sc0003692.1_g000010 Rmu_sc0003720.1_g000001 Rmu_sc0003813.1_g000003 Rmu_sc0003872.1_g000005 Rmu_sc0004010.1_g000012 Rmu_sc0004165.1_g000092 Rmu_sc0004230.1_g000013 Rmu_sc0004318.1_g000020 Rmu_sc0004353.1_g000004 Rmu_sc0004617.1_g000005 Rmu_sc0004617.1_g000006 Rmu_sc0004658.1_g000005 Rmu_sc0005356.1_g000008 Rmu_sc0005994.1_g000014 Rmu_sc0006388.1_g000004 Rmu_sc0006674.1_g000020 Rmu_sc0006898.1_g000008 Rmu_sc0007286.1_g000005 Rmu_sc0007476.1_g000002 Rmu_sc0007671.1_g000005 Rmu_sc0007991.1_g000008 Rmu_sc0008131.1_g000008 Rmu_sc0008163.1_g000011 Rmu_sc0008322.1_g000004 Rmu_sc0008334.1_g000017 Rmu_sc0008835.1_g000009 Rmu_sc0008835.1_g000011 Rmu_sc0009954.1_g000006 Rmu_sc0010050.1_g000001 Rmu_sc0010317.1_g000011 Rmu_sc0010426.1_g000002 Rmu_sc0011111.1_g000005 Rmu_sc0014614.1_g000003 Rmu_sc0014688.1_g000002 Rmu_sc0015167.1_g000003 Rmu_sc0015936.1_g000003 Rmu_sc0017323.1_g000003 Rmu_sc0018541.1_g000001 Rmu_sc0019370.1_g000003 Rmu_sc0020444.1_g000001 Rmu_sc0020600.1_g000003 Rmu_sc0021238.1_g000001 Rmu_sc0022909.1_g000001 Rmu_sc0030397.1_g000001 Rmu_sc0030484.1_g000002 Rmu_sc0035139.1_g000001 Rmu_sc0035719.1_g000001 Rmu_ssc0000287.1_g000010 Rmu_ssc0000451.1_g000005
rosa_roxburghii Rroxscaffold_1G00046590 Rroxscaffold_1G00050100 Rroxscaffold_2G00079390 Rroxscaffold_2G00088790 Rroxscaffold_2G00097170 Rroxscaffold_2G00126350 Rroxscaffold_3G00221550 Rroxscaffold_3G00222700 Rroxscaffold_3G00236390 Rroxscaffold_3G00254000 Rroxscaffold_3G00260090 Rroxscaffold_3G00263600 Rroxscaffold_5G00336900
rosa_rugosa Rorug01G0048200 Rorug01G0172000 Rorug01G0294000 Rorug01G0308200 Rorug01G0355300 Rorug02G0000900 Rorug02G0129600 Rorug02G0136800 Rorug02G0179700 Rorug02G0251500 Rorug02G0305800 Rorug02G0305900 Rorug02G0373800 Rorug02G0396100 Rorug02G0411300 Rorug02G0411400 Rorug02G0411500 Rorug02G0460200 Rorug03G0187400 Rorug03G0299000 Rorug04G0041700 Rorug04G0130800 Rorug04G0168300 Rorug04G0198700 Rorug05G0095100 Rorug05G0194100 Rorug05G0205300 Rorug05G0235300 Rorug06G0088100.1 Rorug06G0120100 Rorug06G0164300 Rorug07G0163600 Rorug07G0163700 Rorug07G0236200 Rorug07G0307200 RorugPtG0006100
rosa_samantha Rh1DG036900 Rh3BG176200 Rh4CG455100 Rh6AG142400 Rh6AG263000 Rh6CG138900 Rh6DG126200 Rh7CG393300 Rh7CG447500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 449
AclWI GGATC 1 cut(s) 511
AfaI GTAC 1 cut(s) 143
AflII CTTAAG 1 cut(s) 542
AflIII ACRYGT 1 cut(s) 181
AgsI TTSAA 7 cut(s) 94, 323, 364, 371, 377, 492, 565
AleI CACNNNNGTG 1 cut(s) 480
AluBI AGCT 2 cut(s) 341, 367
AluI AGCT 2 cut(s) 341, 367
Alw21I GWGCWC 1 cut(s) 398
Alw26I GTCTC 3 cut(s) 102, 347, 707
AlwI GGATC 1 cut(s) 511
AoxI GGCC 3 cut(s) 426, 484, 519
ApeKI GCWGC 1 cut(s) 35
AspS9I GGNCC 3 cut(s) 426, 485, 520
BarI GAAGNNNNNNTAC 2 cut(s) 351, 383
BbsI GAAGAC 1 cut(s) 540
Bbv12I GWGCWC 1 cut(s) 398
BbvCI CCTCAGC 1 cut(s) 165
BbvI GCAGC 1 cut(s) 22
BccI CCATC 4 cut(s) 112, 613, 628, 711
BcoDI GTCTC 3 cut(s) 102, 347, 707
BfaI CTAG 2 cut(s) 71, 77
BfmI CTRYAG 1 cut(s) 342
BfrI CTTAAG 1 cut(s) 542
BisI GCNGC 2 cut(s) 36, 450
BlsI GCNGC 2 cut(s) 37, 451
BmgT120I GGNCC 3 cut(s) 426, 485, 520
BmiI GGNNCC 3 cut(s) 171, 427, 441
BmsI GCATC 2 cut(s) 14, 291
BpiI GAAGAC 1 cut(s) 540
BpmI CTGGAG 1 cut(s) 519
Bpu10I CCTNAGC 1 cut(s) 165
BpuEI CTTGAG 1 cut(s) 368
BsaBI GATNNNNATC 1 cut(s) 604
BsaI GGTCTC 1 cut(s) 707
Bse8I GATNNNNATC 1 cut(s) 604
BseGI GGATG 3 cut(s) 5, 123, 722
BseJI GATNNNNATC 1 cut(s) 604
BseMII CTCAG 1 cut(s) 156
BseRI GAGGAG 1 cut(s) 668
BseXI GCAGC 1 cut(s) 22
BshFI GGCC 3 cut(s) 428, 486, 521
BsiHKAI GWGCWC 1 cut(s) 398
BsmAI GTCTC 3 cut(s) 102, 347, 707
BsnI GGCC 3 cut(s) 428, 486, 521
Bso31I GGTCTC 1 cut(s) 707
Bsp1286I GDGCHC 1 cut(s) 398
Bsp143I GATC 1 cut(s) 503
BspACI CCGC 1 cut(s) 449
BspANI GGCC 3 cut(s) 428, 486, 521
BspCNI CTCAG 1 cut(s) 157
BspLI GGNNCC 3 cut(s) 171, 427, 441
BspPI GGATC 1 cut(s) 511
BspTI CTTAAG 1 cut(s) 542
BspTNI GGTCTC 1 cut(s) 707
BssMI GATC 1 cut(s) 503
Bst4CI ACNGT 2 cut(s) 261, 358
Bst6I CTCTTC 1 cut(s) 710
BstAFI CTTAAG 1 cut(s) 542
BstAPI GCANNNNNTGC 1 cut(s) 86
BstC8I GCNNGC 1 cut(s) 676
BstDEI CTNAG 4 cut(s) 165, 337, 465, 613
BstF5I GGATG 3 cut(s) 5, 123, 722
BstKTI GATC 1 cut(s) 506
BstMAI GTCTC 3 cut(s) 102, 347, 707
BstMBI GATC 1 cut(s) 503
BstMWI GCNNNNNNNGC 4 cut(s) 32, 44, 86, 680
BstNSI RCATGY 1 cut(s) 185
BstSFI CTRYAG 1 cut(s) 342
BstV1I GCAGC 1 cut(s) 22
BstV2I GAAGAC 1 cut(s) 540
BsuRI GGCC 3 cut(s) 428, 486, 521
BtsCI GGATG 3 cut(s) 5, 123, 722
BtsI GCAGTG 1 cut(s) 21
BtsIMutI CAGTG 1 cut(s) 21
Cac8I GCNNGC 1 cut(s) 676
Cfr13I GGNCC 3 cut(s) 426, 485, 520
Csp6I GTAC 1 cut(s) 142
CviAII CATG 4 cut(s) 182, 634, 643, 684
CviJI RGCY 9 cut(s) 68, 341, 367, 428, 486, 521, 612, 667, 696
CviKI_1 RGCY 9 cut(s) 68, 341, 367, 428, 486, 521, 612, 667, 696
CviQI GTAC 1 cut(s) 142
DdeI CTNAG 4 cut(s) 165, 337, 465, 613
DpnI GATC 1 cut(s) 505
DpnII GATC 1 cut(s) 503
Eam1104I CTCTTC 1 cut(s) 710
EarI CTCTTC 1 cut(s) 710
Eco31I GGTCTC 1 cut(s) 707
FaeI CATG 4 cut(s) 185, 637, 646, 687
FalI AAGNNNNNCTT 6 cut(s) 74, 106, 86, 118, 320, 352
FatI CATG 4 cut(s) 181, 633, 642, 683
Fnu4HI GCNGC 2 cut(s) 36, 450
FokI GGATG 1 cut(s) 130
Fsp4HI GCNGC 2 cut(s) 36, 450
FspBI CTAG 2 cut(s) 71, 77
GluI GCNGC 2 cut(s) 36, 450
GsuI CTGGAG 1 cut(s) 519
HaeIII GGCC 3 cut(s) 428, 486, 521
Hin1II CATG 4 cut(s) 185, 637, 646, 687
HindIII AAGCTT 1 cut(s) 365
HinfI GANTC 1 cut(s) 223
Hpy188I TCNGA 4 cut(s) 110, 174, 267, 728
Hpy188III TCNNGA 3 cut(s) 385, 498, 533
Hpy99I CGWCG 1 cut(s) 149
HpyAV CCTTC 2 cut(s) 100, 498
HpyCH4III ACNGT 2 cut(s) 261, 358
HpyCH4IV ACGT 1 cut(s) 15
HpyCH4V TGCA 3 cut(s) 475, 637, 683
HpyF10VI GCNNNNNNNGC 4 cut(s) 32, 44, 86, 680
HpyF3I CTNAG 4 cut(s) 165, 337, 465, 613
HpySE526I ACGT 1 cut(s) 15
Hsp92II CATG 4 cut(s) 185, 637, 646, 687
Kzo9I GATC 1 cut(s) 503
LpnPI CCDG 8 cut(s) 213, 330, 408, 483, 536, 591, 594, 609
Lsp1109I GCAGC 1 cut(s) 22
LweI GCATC 2 cut(s) 14, 291
MaeI CTAG 2 cut(s) 71, 77
MaeII ACGT 1 cut(s) 15
MaeIII GTNAC 2 cut(s) 19, 628
MalI GATC 1 cut(s) 505
MboI GATC 1 cut(s) 503
MboII GAAGA 6 cut(s) 206, 277, 280, 540, 577, 697
MhlI GDGCHC 1 cut(s) 398
MluCI AATT 3 cut(s) 273, 371, 536
MseI TTAA 1 cut(s) 543
MslI CAYNNNNRTG 1 cut(s) 480
MspCI CTTAAG 1 cut(s) 542
MwoI GCNNNNNNNGC 4 cut(s) 32, 44, 86, 680
NdeII GATC 1 cut(s) 503
NlaIII CATG 4 cut(s) 185, 637, 646, 687
NlaIV GGNNCC 3 cut(s) 171, 427, 441
NmuCI GTSAC 1 cut(s) 19
NspI RCATGY 1 cut(s) 185
OliI CACNNNNGTG 1 cut(s) 480
PciI ACATGT 1 cut(s) 181
PfeI GAWTC 1 cut(s) 223
PflFI GACNNNGTC 1 cut(s) 17
PkrI GCNGC 2 cut(s) 37, 451
PscI ACATGT 1 cut(s) 181
PspN4I GGNNCC 3 cut(s) 171, 427, 441
PspPI GGNCC 3 cut(s) 426, 485, 520
PsyI GACNNNGTC 1 cut(s) 17
RsaI GTAC 1 cut(s) 143
RsaNI GTAC 1 cut(s) 142
RseI CAYNNNNRTG 1 cut(s) 480
SaqAI TTAA 1 cut(s) 543
SatI GCNGC 2 cut(s) 36, 450
Sau3AI GATC 1 cut(s) 503
Sau96I GGNCC 3 cut(s) 426, 485, 520
SduI GDGCHC 1 cut(s) 398
SfaNI GCATC 2 cut(s) 14, 291
SfcI CTRYAG 1 cut(s) 342
SmiMI CAYNNNNRTG 1 cut(s) 480
SmlI CTYRAG 2 cut(s) 383, 542
SmoI CTYRAG 2 cut(s) 383, 542
Sse9I AATT 3 cut(s) 273, 371, 536
SsiI CCGC 1 cut(s) 449
SspI AATATT 1 cut(s) 529
SspMI CTAG 2 cut(s) 71, 77
TaaI ACNGT 2 cut(s) 261, 358
TaiI ACGT 1 cut(s) 18
TasI AATT 3 cut(s) 273, 371, 536
TauI GCSGC 1 cut(s) 452
TfiI GAWTC 1 cut(s) 223
Tru1I TTAA 1 cut(s) 543
Tru9I TTAA 1 cut(s) 543
TscAI CASTG 1 cut(s) 28
TseFI GTSAC 1 cut(s) 19
TseI GCWGC 1 cut(s) 35
Tsp45I GTSAC 1 cut(s) 19
TspDTI ATGAA 3 cut(s) 191, 207, 697
TspRI CASTG 1 cut(s) 28
Tth111I GACNNNGTC 1 cut(s) 17
Vha464I CTTAAG 1 cut(s) 542
XceI RCATGY 1 cut(s) 185
XcmI CCANNNNNNNNNTGG 1 cut(s) 640
XspI CTAG 2 cut(s) 71, 77
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.